Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36899 * 120.00453 * 2 1 4 4 H 1.08001 * 120.00598 * 226.65410 * 3 2 1 5 5 C 1.38850 * 119.99864 * 46.65150 * 3 2 1 6 6 N 1.31547 * 119.99833 * 7.94166 * 5 3 2 7 7 Si 1.86799 * 120.00397 * 187.93961 * 5 3 2 8 8 H 1.48499 * 109.46964 * 89.99935 * 7 5 3 9 9 H 1.48493 * 109.47086 * 210.00386 * 7 5 3 10 10 H 1.48504 * 109.46630 * 330.00046 * 7 5 3 11 11 C 1.38695 * 119.99976 * 180.02562 * 2 1 3 12 12 N 1.31423 * 128.73436 * 7.17085 * 11 2 1 13 13 O 1.20839 * 109.44541 * 180.27780 * 12 11 2 14 14 N 1.20856 * 116.12969 * 359.69885 * 13 12 11 15 15 C 1.31560 * 109.38038 * 359.97438 * 14 13 12 16 16 C 1.48046 * 128.74836 * 180.02562 * 15 14 13 17 17 O 1.21424 * 120.00528 * 186.35732 * 16 15 14 18 18 O 1.34681 * 119.99564 * 6.08585 * 16 15 14 19 19 H 1.09003 * 109.47383 * 264.94292 * 1 2 3 20 20 H 1.08997 * 109.47114 * 24.94101 * 1 2 3 21 21 H 1.09001 * 109.47585 * 144.94155 * 1 2 3 22 22 H 0.96993 * 120.00321 * 180.02562 * 6 5 3 23 23 H 0.96698 * 116.99852 * 180.27509 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 2.9755 1.3322 -0.6801 5 6 1.7819 2.1995 0.8744 6 7 0.8828 1.9700 1.8069 7 14 2.5638 3.8895 0.7268 8 1 1.7566 4.7297 -0.1938 9 1 2.6145 4.5301 2.0655 10 1 3.9421 3.7520 0.1913 11 6 2.1584 -1.2011 -0.0005 12 7 1.6887 -2.4218 -0.1291 13 8 2.6013 -3.2119 -0.0741 14 7 3.7045 -2.7413 0.0744 15 6 3.6148 -1.4304 0.1394 16 6 4.6966 -0.4351 0.3150 17 8 4.4234 0.7379 0.4693 18 8 5.9838 -0.8316 0.3091 19 1 -0.3634 -0.0906 1.0237 20 1 -0.3633 0.9318 -0.4333 21 1 -0.3634 -0.8412 -0.5903 22 1 0.6257 2.6783 2.4176 23 1 6.6548 -0.1461 0.4314 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259645373.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = 26.463426 kcal Electronic energy + Delta-G solvation = -14449.690426 eV Core-core repulsion = 11689.599846 eV Total energy + Delta-G solvation = -2760.090580 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.058 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.25683 -40.94368 -38.56912 -36.91304 -35.22135 -34.77833 -33.00713 -28.54168 -27.42410 -26.23876 -23.22676 -22.35324 -19.88596 -19.63038 -19.00480 -18.85114 -17.62032 -16.96211 -16.44359 -16.21515 -15.54493 -15.12359 -14.43647 -13.64729 -13.17314 -13.04884 -12.96008 -12.79060 -12.48758 -12.32696 -12.17952 -12.05371 -11.78017 -11.46937 -10.75117 -8.94207 -8.31732 -6.08978 -0.13242 0.92926 1.40715 1.46619 1.56988 1.67013 1.87567 2.09667 2.52114 2.85083 3.04025 3.43048 3.86256 4.16745 4.55588 4.64073 4.78994 5.11445 5.44613 5.60443 6.05710 6.57736 7.04577 7.09852 7.44051 8.02524 8.68548 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.031854 B = 0.014899 C = 0.010619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.796620 B = 1878.912521 C = 2636.109600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.407 5.407 3 C -0.303 4.303 4 H 0.094 0.906 5 C 0.012 3.988 6 N -0.900 5.900 7 Si 0.985 3.015 8 H -0.266 1.266 9 H -0.284 1.284 10 H -0.265 1.265 11 C 0.283 3.717 12 N -0.470 5.470 13 O 0.350 5.650 14 N -0.308 5.308 15 C -0.112 4.112 16 C 0.567 3.433 17 O -0.478 6.478 18 O -0.501 6.501 19 H 0.041 0.959 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.272 0.728 23 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -1.774 -2.759 5.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.109 5.109 3 C -0.431 4.431 4 H 0.112 0.888 5 C -0.192 4.192 6 N -0.537 5.537 7 Si 0.808 3.192 8 H -0.191 1.191 9 H -0.210 1.210 10 H -0.189 1.189 11 C 0.025 3.975 12 N -0.233 5.233 13 O 0.127 5.873 14 N -0.023 5.023 15 C -0.274 4.274 16 C 0.407 3.593 17 O -0.362 6.362 18 O -0.316 6.316 19 H 0.059 0.941 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 4.188 -2.536 -2.674 5.579 hybrid contribution 0.706 2.078 0.422 2.235 sum 4.894 -0.458 -2.253 5.407 Atomic orbital electron populations 1.21458 0.78332 1.01024 1.00556 1.41876 1.04917 0.99112 1.65006 1.19740 1.15902 0.87873 1.19619 0.88848 1.26283 0.96244 1.03788 0.92842 1.70058 1.31763 1.34800 1.17050 0.85041 0.79325 0.77225 0.77578 1.19115 1.20955 1.18890 1.23446 0.88019 0.88823 0.97217 1.75338 1.11224 0.98310 1.38477 1.84737 1.06917 1.32715 1.62887 1.74997 1.06798 1.09717 1.10801 1.23843 0.93143 0.90206 1.20254 1.18598 0.81471 0.85130 0.74091 1.91135 1.83112 1.18022 1.43975 1.84504 1.15619 1.46547 1.84919 0.94065 0.91472 0.92108 0.91909 0.70233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.81 9.20 127.77 1.18 6.98 14 2 N -0.41 -20.46 2.97 -542.77 -1.61 -22.07 14 3 C -0.30 -15.78 6.40 84.05 0.54 -15.24 14 4 H 0.09 4.95 6.06 -2.91 -0.02 4.93 14 5 C 0.01 0.63 5.25 84.88 0.45 1.08 14 6 N -0.90 -48.36 12.09 21.65 0.26 -48.09 14 7 Si 0.98 41.89 29.56 68.60 2.03 43.92 14 8 H -0.27 -10.66 7.11 99.48 0.71 -9.95 14 9 H -0.28 -11.96 7.11 99.48 0.71 -11.25 14 10 H -0.26 -11.27 7.11 99.48 0.71 -10.56 14 11 C 0.28 13.50 7.87 135.86 1.07 14.57 14 12 N -0.47 -20.56 11.88 -57.77 -0.69 -21.25 14 13 O 0.35 13.96 11.64 140.91 1.64 15.60 14 14 N -0.31 -12.52 12.27 -51.12 -0.63 -13.14 14 15 C -0.11 -4.96 7.59 44.41 0.34 -4.62 14 16 C 0.57 23.17 8.32 70.42 0.59 23.76 14 17 O -0.48 -22.06 13.00 20.08 0.26 -21.80 14 18 O -0.50 -15.30 13.44 -55.90 -0.75 -16.05 14 19 H 0.04 1.97 7.73 -2.39 -0.02 1.95 14 20 H 0.07 2.97 7.95 -2.39 -0.02 2.95 14 21 H 0.06 2.44 7.87 -2.39 -0.02 2.42 14 22 H 0.27 13.82 8.31 -92.71 -0.77 13.05 14 23 H 0.44 8.11 9.11 -74.06 -0.67 7.44 14 Total: -1.00 -60.66 219.82 5.27 -55.39 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 0.60 Total: 0.97 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 4.15 Total: 26.53 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -2.66 Total: -104.56 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 1.15 Total: -22.26 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -60.66 5.27 -55.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645373.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.855 kcal (2) G-P(sol) polarization free energy of solvation -60.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds