Wall clock time and date at job start Mon Mar 30 2020 02:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 111.00123 * 2 1 4 4 C 1.46901 * 110.99816 * 236.04586 * 2 1 3 5 5 H 1.09001 * 109.52156 * 59.87272 * 4 2 1 6 6 C 1.53119 * 109.52565 * 299.68684 * 4 2 1 7 7 C 1.53035 * 109.28008 * 182.44032 * 6 4 2 8 8 N 1.46844 * 109.52224 * 59.18117 * 7 6 4 9 9 C 1.46904 * 110.99956 * 174.16537 * 8 7 6 10 10 C 1.46850 * 111.19824 * 298.25268 * 8 7 6 11 11 C 1.53042 * 109.52144 * 61.74386 * 10 8 7 12 12 H 1.09000 * 109.50306 * 180.88248 * 11 10 8 13 13 C 1.50698 * 109.53383 * 60.78272 * 11 10 8 14 14 H 1.07996 * 120.00253 * 245.60559 * 13 11 10 15 15 C 1.37881 * 120.00107 * 65.60747 * 13 11 10 16 16 N 1.31515 * 119.99656 * 9.60413 * 15 13 11 17 17 Si 1.86794 * 120.00205 * 189.60647 * 15 13 11 18 18 H 1.48501 * 109.47251 * 94.98821 * 17 15 13 19 19 H 1.48502 * 109.47001 * 214.99223 * 17 15 13 20 20 H 1.48505 * 109.47088 * 334.98663 * 17 15 13 21 21 H 1.08994 * 109.47482 * 183.95175 * 1 2 3 22 22 H 1.09003 * 109.46816 * 63.95045 * 1 2 3 23 23 H 1.08999 * 109.46878 * 303.95410 * 1 2 3 24 24 H 1.08998 * 109.47094 * 56.04624 * 3 2 1 25 25 H 1.09005 * 109.47016 * 176.04876 * 3 2 1 26 26 H 1.08998 * 109.47056 * 296.04643 * 3 2 1 27 27 H 1.09007 * 109.49662 * 302.38421 * 6 4 2 28 28 H 1.08998 * 109.50513 * 62.49483 * 6 4 2 29 29 H 1.08994 * 109.46327 * 299.16298 * 7 6 4 30 30 H 1.09000 * 109.45501 * 179.18718 * 7 6 4 31 31 H 1.09001 * 109.47392 * 184.20752 * 9 8 7 32 32 H 1.09000 * 109.46578 * 304.20180 * 9 8 7 33 33 H 1.08994 * 109.47641 * 64.20029 * 9 8 7 34 34 H 1.08999 * 109.46153 * 301.73600 * 10 8 7 35 35 H 1.08994 * 109.45912 * 181.75530 * 10 8 7 36 36 H 0.96994 * 119.99780 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1376 5 1 1.6445 -0.3221 -2.0692 6 6 1.5115 -2.2158 -1.0461 7 6 2.1122 -3.0227 -2.1994 8 7 3.5778 -2.9713 -2.1233 9 6 4.1884 -3.8473 -3.1321 10 6 4.0684 -1.5936 -2.2565 11 6 3.5261 -0.7440 -1.1049 12 1 3.8777 0.2821 -1.2128 13 6 4.0094 -1.3062 0.2071 14 1 3.3029 -1.7259 0.9078 15 6 5.3537 -1.2847 0.5130 16 7 6.1899 -0.6099 -0.2454 17 14 5.9872 -2.2140 2.0044 18 1 6.4661 -3.5557 1.5850 19 1 7.1079 -1.4582 2.6192 20 1 4.8911 -2.3669 2.9947 21 1 -0.3634 -1.0251 0.0708 22 1 -0.3633 0.4513 -0.9233 23 1 -0.3633 0.5740 0.8524 24 1 1.5899 1.9163 0.8524 25 1 3.0829 1.3432 0.0708 26 1 1.7044 1.8723 -0.9233 27 1 1.8294 -2.6462 -0.0964 28 1 0.4238 -2.2413 -1.1119 29 1 1.7828 -2.6001 -3.1486 30 1 1.7811 -4.0588 -2.1288 31 1 5.2710 -3.8481 -3.0053 32 1 3.8077 -4.8615 -3.0108 33 1 3.9395 -3.4826 -4.1286 34 1 3.7297 -1.1777 -3.2054 35 1 5.1579 -1.5918 -2.2274 36 1 7.1356 -0.5951 -0.0304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259706614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:39 Heat of formation + Delta-G solvation = -3.144794 kcal Electronic energy + Delta-G solvation = -15535.873187 eV Core-core repulsion = 13247.423893 eV Total energy + Delta-G solvation = -2288.449294 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33097 -37.42174 -34.79042 -32.70654 -31.42090 -28.27165 -27.36997 -26.79283 -24.40262 -23.22315 -22.02894 -20.38970 -17.64054 -17.12843 -16.43968 -15.88517 -15.72745 -15.47909 -15.28280 -14.95405 -14.25568 -14.02648 -13.53132 -13.26002 -13.09929 -13.01979 -12.74243 -12.48307 -12.41856 -12.34758 -12.03847 -11.95499 -11.73851 -11.26568 -10.82998 -10.64066 -10.19240 -8.94911 -8.86891 -7.91680 -5.86534 1.47048 1.49939 1.58014 2.60320 3.24162 3.32323 3.47528 4.08919 4.28200 4.37711 4.46350 4.48344 4.56559 4.59131 4.63984 4.77852 4.79601 4.83293 4.85583 4.92498 5.03394 5.10398 5.14959 5.21756 5.28803 5.52910 5.69142 5.72192 6.05470 6.33509 6.42559 6.54563 6.57253 6.71730 7.15132 7.73568 9.19353 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.015755 C = 0.011173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.411219 B = 1776.826618 C = 2505.385556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.037 3.963 4 C 0.100 3.900 5 H 0.008 0.992 6 C -0.094 4.094 7 C 0.065 3.935 8 N -0.543 5.543 9 C 0.032 3.968 10 C 0.085 3.915 11 C 0.050 3.950 12 H 0.005 0.995 13 C -0.436 4.436 14 H 0.051 0.949 15 C 0.009 3.991 16 N -0.935 5.935 17 Si 0.936 3.064 18 H -0.286 1.286 19 H -0.296 1.296 20 H -0.273 1.273 21 H 0.074 0.926 22 H 0.021 0.979 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.024 0.976 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.022 0.978 34 H -0.008 1.008 35 H 0.053 0.947 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 -2.339 -3.513 10.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.111 4.111 4 C -0.008 4.008 5 H 0.025 0.975 6 C -0.132 4.132 7 C -0.063 4.063 8 N -0.267 5.267 9 C -0.116 4.116 10 C -0.044 4.044 11 C 0.031 3.969 12 H 0.022 0.978 13 C -0.474 4.474 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.578 5.578 17 Si 0.765 3.235 18 H -0.213 1.213 19 H -0.223 1.223 20 H -0.197 1.197 21 H 0.092 0.908 22 H 0.039 0.961 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.010 0.990 35 H 0.072 0.928 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.341 -2.697 -2.608 10.066 hybrid contribution 0.514 0.496 -0.848 1.109 sum -8.826 -2.201 -3.456 9.731 Atomic orbital electron populations 1.22461 0.87092 1.02502 1.00254 1.61832 1.07629 1.13507 1.43790 1.22219 1.00769 0.88689 0.99425 1.21634 0.96326 0.93956 0.88897 0.97462 1.21523 0.98690 0.93708 0.99311 1.22033 0.87338 1.00492 0.96451 1.61742 1.06567 1.09368 1.49038 1.22305 0.99513 0.97534 0.92297 1.21871 0.99706 0.87990 0.94857 1.18815 0.89921 0.93891 0.94289 0.97754 1.20914 0.91008 1.34501 1.01009 0.93046 1.25438 0.97783 0.96681 0.98709 1.70058 1.02944 1.43336 1.41495 0.85877 0.77602 0.78900 0.81142 1.21277 1.22260 1.19733 0.90770 0.96078 0.90790 0.90766 0.93044 0.96548 0.91860 0.90646 0.95809 0.89462 0.93177 0.90053 0.95960 0.99016 0.92823 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 9.22 127.69 1.18 1.90 16 2 N -0.54 -20.94 4.36 -922.79 -4.02 -24.96 16 3 C 0.04 1.40 9.10 127.69 1.16 2.56 16 4 C 0.10 4.09 1.67 44.99 0.08 4.17 16 5 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 6 C -0.09 -3.41 4.81 30.65 0.15 -3.27 16 7 C 0.07 2.24 5.46 86.33 0.47 2.71 16 8 N -0.54 -22.44 4.52 -922.60 -4.17 -26.61 16 9 C 0.03 1.08 9.59 127.69 1.22 2.31 16 10 C 0.08 4.01 4.76 86.33 0.41 4.42 16 11 C 0.05 2.46 1.47 -11.49 -0.02 2.44 16 12 H 0.00 0.25 6.45 -2.39 -0.02 0.24 16 13 C -0.44 -23.61 6.93 25.60 0.18 -23.43 16 14 H 0.05 2.87 6.64 -2.91 -0.02 2.85 16 15 C 0.01 0.50 5.20 84.66 0.44 0.94 16 16 N -0.94 -55.34 12.18 21.45 0.26 -55.08 16 17 Si 0.94 46.05 29.55 68.60 2.03 48.08 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 21 H 0.07 2.00 6.37 -2.39 -0.02 1.98 16 22 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 24 H 0.07 2.40 8.12 -2.39 -0.02 2.38 16 25 H 0.05 2.33 6.19 -2.38 -0.01 2.31 16 26 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 2.62 6.72 -2.38 -0.02 2.61 16 28 H 0.08 2.24 6.56 -2.39 -0.02 2.22 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.05 2.90 6.89 -2.39 -0.02 2.88 16 36 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -61.68 273.66 0.39 -61.29 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 1.02 Total: 2.53 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.27 Total: -5.25 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -7.93 Total: -106.65 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -61.68 0.39 -61.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.142 kcal (2) G-P(sol) polarization free energy of solvation -61.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds