Wall clock time and date at job start Mon Mar 30 2020 02:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00319 * 2 1 4 4 C 1.46904 * 110.99709 * 123.95579 * 2 1 3 5 5 H 1.09007 * 109.57303 * 299.83364 * 4 2 1 6 6 C 1.53114 * 109.52476 * 59.99730 * 4 2 1 7 7 C 1.53037 * 109.31211 * 177.54117 * 6 4 2 8 8 N 1.46854 * 109.52285 * 300.88400 * 7 6 4 9 9 C 1.46895 * 110.99648 * 185.80147 * 8 7 6 10 10 C 1.46840 * 111.23238 * 61.67711 * 8 7 6 11 11 C 1.53035 * 109.52994 * 298.28004 * 10 8 7 12 12 H 1.08998 * 109.54151 * 179.13613 * 11 10 8 13 13 C 1.50700 * 109.50125 * 299.24095 * 11 10 8 14 14 H 1.08005 * 120.00090 * 119.80275 * 13 11 10 15 15 C 1.37875 * 119.99993 * 299.79508 * 13 11 10 16 16 N 1.31517 * 120.00095 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00163 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47389 * 120.00085 * 17 15 13 20 20 H 1.48505 * 109.47101 * 240.00592 * 17 15 13 21 21 H 1.09000 * 109.47064 * 296.05216 * 1 2 3 22 22 H 1.09003 * 109.46447 * 56.04138 * 1 2 3 23 23 H 1.08992 * 109.47356 * 176.04294 * 1 2 3 24 24 H 1.09004 * 109.47012 * 183.94985 * 3 2 1 25 25 H 1.08994 * 109.46717 * 303.95377 * 3 2 1 26 26 H 1.08999 * 109.46816 * 63.95255 * 3 2 1 27 27 H 1.09002 * 109.50377 * 297.50242 * 6 4 2 28 28 H 1.09003 * 109.50316 * 57.58237 * 6 4 2 29 29 H 1.09000 * 109.46159 * 60.85546 * 7 6 4 30 30 H 1.09000 * 109.46461 * 180.82902 * 7 6 4 31 31 H 1.08999 * 109.47502 * 295.74346 * 9 8 7 32 32 H 1.08996 * 109.47397 * 55.74738 * 9 8 7 33 33 H 1.09003 * 109.47015 * 175.74892 * 9 8 7 34 34 H 1.09001 * 109.46294 * 178.26219 * 10 8 7 35 35 H 1.09003 * 109.45458 * 58.29272 * 10 8 7 36 36 H 0.96994 * 119.99721 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 1.6492 -0.3197 2.0699 6 6 1.5051 -2.2139 1.0503 7 6 2.1055 -3.0220 2.2030 8 7 3.5712 -2.9761 2.1232 9 6 4.1809 -3.8528 3.1319 10 6 4.0679 -1.6003 2.2522 11 6 3.5261 -0.7506 1.1005 12 1 3.8823 0.2742 1.2046 13 6 4.0032 -1.3184 -0.2114 14 1 3.2872 -1.6566 -0.9458 15 6 5.3539 -1.4061 -0.4741 16 7 6.2259 -0.9946 0.4204 17 14 5.9454 -2.1092 -2.1005 18 1 4.7743 -2.4976 -2.9270 19 1 6.7430 -1.0852 -2.8217 20 1 6.7888 -3.3046 -1.8455 21 1 -0.3633 0.4513 0.9233 22 1 -0.3632 0.5741 -0.8524 23 1 -0.3633 -1.0251 -0.0709 24 1 3.0829 1.3431 -0.0708 25 1 1.5899 1.9162 -0.8524 26 1 1.7044 1.8723 0.9233 27 1 0.4174 -2.2346 1.1193 28 1 1.8178 -2.6474 0.1004 29 1 1.7806 -2.5967 3.1525 30 1 1.7697 -4.0567 2.1347 31 1 3.9365 -3.4851 4.1284 32 1 3.7955 -4.8655 3.0137 33 1 5.2631 -3.8584 3.0020 34 1 5.1575 -1.6031 2.2201 35 1 3.7337 -1.1812 3.2013 36 1 7.1760 -1.0567 0.2356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259706616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:41 Heat of formation + Delta-G solvation = 17.765268 kcal Electronic energy + Delta-G solvation = -15553.045111 eV Core-core repulsion = 13265.502545 eV Total energy + Delta-G solvation = -2287.542566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.65641 -35.85672 -32.80884 -31.08305 -29.53169 -26.84461 -25.79225 -24.80580 -22.84071 -21.47941 -20.40161 -18.56215 -15.63677 -15.48516 -14.60843 -14.26842 -14.08330 -13.90484 -13.54033 -13.40565 -12.59146 -12.34320 -11.83538 -11.72602 -11.69783 -11.17410 -10.97750 -10.88011 -10.71058 -10.45258 -10.44639 -10.18983 -9.81939 -9.53904 -8.93395 -8.73263 -8.10211 -7.44590 -7.17067 -5.75353 -3.71294 3.46843 3.54321 3.60468 4.66517 4.74208 4.96474 5.57723 5.65187 5.75515 5.81279 5.89891 5.96919 6.00310 6.09338 6.15877 6.18633 6.24020 6.33150 6.45227 6.48220 6.51157 6.62650 6.78309 6.95448 7.02132 7.18144 7.58458 7.67773 7.90679 8.00468 8.18707 8.28820 8.30115 8.72150 9.27962 9.88955 11.33750 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.015876 C = 0.011125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.064633 B = 1763.232450 C = 2516.295686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.522 5.522 3 C 0.031 3.969 4 C 0.094 3.906 5 H 0.006 0.994 6 C -0.099 4.099 7 C 0.064 3.936 8 N -0.515 5.515 9 C 0.032 3.968 10 C 0.066 3.934 11 C 0.052 3.948 12 H 0.031 0.969 13 C -0.446 4.446 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.908 5.908 17 Si 0.889 3.111 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.290 1.290 21 H 0.010 0.990 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.052 0.948 26 H 0.007 0.993 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.010 0.990 30 H 0.059 0.941 31 H 0.006 0.994 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.109 0.891 35 H -0.019 1.019 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 -0.586 2.995 8.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.245 5.245 3 C -0.118 4.118 4 C -0.014 4.014 5 H 0.024 0.976 6 C -0.137 4.137 7 C -0.065 4.065 8 N -0.239 5.239 9 C -0.117 4.117 10 C -0.061 4.061 11 C 0.034 3.966 12 H 0.049 0.951 13 C -0.485 4.485 14 H 0.082 0.918 15 C -0.143 4.143 16 N -0.551 5.551 17 Si 0.718 3.282 18 H -0.200 1.200 19 H -0.219 1.219 20 H -0.217 1.217 21 H 0.028 0.972 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.071 0.929 26 H 0.025 0.975 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.029 0.971 30 H 0.077 0.923 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.127 0.873 35 H -0.001 1.001 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.231 -0.966 2.101 7.591 hybrid contribution -0.129 0.295 0.799 0.861 sum -7.359 -0.671 2.900 7.938 Atomic orbital electron populations 1.22411 0.89845 1.01406 0.98946 1.61885 1.05089 1.13293 1.44239 1.22341 1.02935 0.88446 0.98049 1.21811 0.98941 0.92379 0.88228 0.97583 1.21553 0.96613 0.95249 1.00317 1.21951 0.89583 0.98761 0.96157 1.61795 1.04102 1.10938 1.47091 1.22261 1.00433 0.96670 0.92330 1.22313 1.03553 0.85957 0.94322 1.18904 0.86996 0.95468 0.95266 0.95142 1.20907 0.90883 1.37390 0.99293 0.91824 1.24845 0.97038 0.96085 0.96315 1.69824 1.01139 1.49911 1.34202 0.86585 0.78473 0.78433 0.84679 1.19984 1.21869 1.21678 0.97164 0.92461 0.91714 0.89361 0.92901 0.97465 0.93984 0.89413 0.97147 0.92254 0.97516 0.92883 0.91747 0.87327 1.00070 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.21 60.06 0.55 0.92 16 2 N -0.52 -10.38 4.29 -243.02 -1.04 -11.42 16 3 C 0.03 0.57 9.11 60.07 0.55 1.12 16 4 C 0.09 1.99 1.67 -67.59 -0.11 1.88 16 5 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 6 C -0.10 -1.95 4.80 -26.65 -0.13 -2.08 16 7 C 0.06 1.23 5.47 -3.83 -0.02 1.21 16 8 N -0.52 -11.24 4.51 -242.97 -1.10 -12.34 16 9 C 0.03 0.59 9.59 60.06 0.58 1.17 16 10 C 0.07 1.59 4.70 -3.84 -0.02 1.57 16 11 C 0.05 1.28 1.61 -91.69 -0.15 1.14 16 12 H 0.03 0.81 6.50 -51.93 -0.34 0.47 16 13 C -0.45 -11.94 6.97 -34.44 -0.24 -12.18 16 14 H 0.06 1.77 6.72 -52.48 -0.35 1.42 16 15 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 16 N -0.91 -25.87 11.33 55.43 0.63 -25.24 16 17 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 22 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 23 H 0.06 1.00 6.36 -51.93 -0.33 0.67 16 24 H 0.09 1.88 6.21 -51.93 -0.32 1.56 16 25 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 26 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.04 0.71 6.55 -51.93 -0.34 0.37 16 28 H 0.09 1.92 6.82 -51.93 -0.35 1.57 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.11 2.90 6.05 -51.93 -0.31 2.59 16 35 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 272.37 15.07 4.10 4.10 Total: -1.00 -28.40 272.37 -7.64 -36.04 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -6.13 Total: -4.42 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 0.91 Total: -3.83 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -1.51 Total: -49.00 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.40 -7.64 -36.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.805 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds