Wall clock time and date at job start Mon Mar 30 2020 02:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00319 * 2 1 4 4 C 1.46904 * 110.99709 * 123.95579 * 2 1 3 5 5 H 1.09007 * 109.57303 * 299.83364 * 4 2 1 6 6 C 1.53114 * 109.52476 * 59.99730 * 4 2 1 7 7 C 1.53037 * 109.31211 * 177.54117 * 6 4 2 8 8 N 1.46854 * 109.52285 * 300.88400 * 7 6 4 9 9 C 1.46895 * 110.99648 * 185.80147 * 8 7 6 10 10 C 1.46840 * 111.23238 * 61.67711 * 8 7 6 11 11 C 1.53035 * 109.52994 * 298.28004 * 10 8 7 12 12 H 1.08998 * 109.54151 * 179.13613 * 11 10 8 13 13 C 1.50700 * 109.50125 * 299.24095 * 11 10 8 14 14 H 1.08005 * 120.00090 * 119.80275 * 13 11 10 15 15 C 1.37875 * 119.99993 * 299.79508 * 13 11 10 16 16 N 1.31517 * 120.00095 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00163 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47389 * 120.00085 * 17 15 13 20 20 H 1.48505 * 109.47101 * 240.00592 * 17 15 13 21 21 H 1.09000 * 109.47064 * 296.05216 * 1 2 3 22 22 H 1.09003 * 109.46447 * 56.04138 * 1 2 3 23 23 H 1.08992 * 109.47356 * 176.04294 * 1 2 3 24 24 H 1.09004 * 109.47012 * 183.94985 * 3 2 1 25 25 H 1.08994 * 109.46717 * 303.95377 * 3 2 1 26 26 H 1.08999 * 109.46816 * 63.95255 * 3 2 1 27 27 H 1.09002 * 109.50377 * 297.50242 * 6 4 2 28 28 H 1.09003 * 109.50316 * 57.58237 * 6 4 2 29 29 H 1.09000 * 109.46159 * 60.85546 * 7 6 4 30 30 H 1.09000 * 109.46461 * 180.82902 * 7 6 4 31 31 H 1.08999 * 109.47502 * 295.74346 * 9 8 7 32 32 H 1.08996 * 109.47397 * 55.74738 * 9 8 7 33 33 H 1.09003 * 109.47015 * 175.74892 * 9 8 7 34 34 H 1.09001 * 109.46294 * 178.26219 * 10 8 7 35 35 H 1.09003 * 109.45458 * 58.29272 * 10 8 7 36 36 H 0.96994 * 119.99721 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 1.6492 -0.3197 2.0699 6 6 1.5051 -2.2139 1.0503 7 6 2.1055 -3.0220 2.2030 8 7 3.5712 -2.9761 2.1232 9 6 4.1809 -3.8528 3.1319 10 6 4.0679 -1.6003 2.2522 11 6 3.5261 -0.7506 1.1005 12 1 3.8823 0.2742 1.2046 13 6 4.0032 -1.3184 -0.2114 14 1 3.2872 -1.6566 -0.9458 15 6 5.3539 -1.4061 -0.4741 16 7 6.2259 -0.9946 0.4204 17 14 5.9454 -2.1092 -2.1005 18 1 4.7743 -2.4976 -2.9270 19 1 6.7430 -1.0852 -2.8217 20 1 6.7888 -3.3046 -1.8455 21 1 -0.3633 0.4513 0.9233 22 1 -0.3632 0.5741 -0.8524 23 1 -0.3633 -1.0251 -0.0709 24 1 3.0829 1.3431 -0.0708 25 1 1.5899 1.9162 -0.8524 26 1 1.7044 1.8723 0.9233 27 1 0.4174 -2.2346 1.1193 28 1 1.8178 -2.6474 0.1004 29 1 1.7806 -2.5967 3.1525 30 1 1.7697 -4.0567 2.1347 31 1 3.9365 -3.4851 4.1284 32 1 3.7955 -4.8655 3.0137 33 1 5.2631 -3.8584 3.0020 34 1 5.1575 -1.6031 2.2201 35 1 3.7337 -1.1812 3.2013 36 1 7.1760 -1.0567 0.2356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259706616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:41 Heat of formation + Delta-G solvation = -1.590231 kcal Electronic energy + Delta-G solvation = -15553.884428 eV Core-core repulsion = 13265.502545 eV Total energy + Delta-G solvation = -2288.381883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.31743 -37.40829 -34.79998 -32.69865 -31.35630 -28.27037 -27.35550 -26.80438 -24.39858 -23.19003 -22.00325 -20.37545 -17.63928 -17.11365 -16.47038 -15.86292 -15.69984 -15.48237 -15.25921 -14.93938 -14.27324 -14.04913 -13.48616 -13.25232 -13.07404 -12.95039 -12.75722 -12.48610 -12.37567 -12.34691 -12.03041 -11.89541 -11.74295 -11.25538 -10.80416 -10.66891 -10.18640 -8.95875 -8.82561 -7.86914 -5.87095 1.46499 1.49799 1.60084 2.60491 3.24077 3.36479 3.48976 4.09949 4.28187 4.38787 4.47027 4.49969 4.57198 4.60456 4.64723 4.78536 4.79467 4.85202 4.85548 4.94608 5.04630 5.10971 5.17371 5.25372 5.28303 5.54573 5.69320 5.77868 6.09919 6.35893 6.43313 6.56646 6.60755 6.74160 7.15060 7.74593 9.20744 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.015876 C = 0.011125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.064633 B = 1763.232450 C = 2516.295686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.036 3.964 4 C 0.100 3.900 5 H 0.007 0.993 6 C -0.093 4.093 7 C 0.064 3.936 8 N -0.540 5.540 9 C 0.034 3.966 10 C 0.077 3.923 11 C 0.051 3.949 12 H -0.001 1.001 13 C -0.437 4.437 14 H 0.052 0.948 15 C 0.009 3.991 16 N -0.932 5.932 17 Si 0.939 3.061 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.292 1.292 21 H 0.021 0.979 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.016 0.984 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.085 0.915 31 H 0.020 0.980 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.075 0.925 35 H -0.016 1.016 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 -1.386 2.944 10.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.112 4.112 4 C -0.008 4.008 5 H 0.024 0.976 6 C -0.131 4.131 7 C -0.064 4.064 8 N -0.264 5.264 9 C -0.114 4.114 10 C -0.052 4.052 11 C 0.032 3.968 12 H 0.017 0.983 13 C -0.475 4.475 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.576 5.576 17 Si 0.769 3.231 18 H -0.197 1.197 19 H -0.218 1.218 20 H -0.219 1.219 21 H 0.039 0.961 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.035 0.965 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.104 0.896 31 H 0.038 0.962 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.002 0.998 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.219 -1.771 2.047 9.608 hybrid contribution 0.445 0.567 0.825 1.096 sum -8.773 -1.204 2.872 9.310 Atomic orbital electron populations 1.22460 0.87092 1.02489 1.00278 1.61844 1.07675 1.13550 1.43749 1.22236 1.00771 0.88659 0.99544 1.21636 0.96397 0.93910 0.88856 0.97558 1.21503 0.98551 0.93769 0.99276 1.22041 0.87686 1.00348 0.96346 1.61711 1.06118 1.09720 1.48890 1.22270 0.99506 0.97420 0.92223 1.21989 1.01506 0.87610 0.94088 1.18813 0.89833 0.93593 0.94554 0.98291 1.20975 0.90477 1.36272 0.99822 0.92979 1.25441 0.97501 0.96953 0.98740 1.69960 1.01024 1.51162 1.35461 0.85781 0.77892 0.77605 0.81870 1.19660 1.21817 1.21884 0.96086 0.90701 0.90843 0.92979 0.90612 0.96518 0.90743 0.91909 0.96057 0.89646 0.96180 0.90229 0.93271 0.90715 0.99820 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 9.21 127.69 1.18 1.89 16 2 N -0.54 -20.82 4.29 -922.79 -3.96 -24.78 16 3 C 0.04 1.33 9.11 127.69 1.16 2.49 16 4 C 0.10 4.12 1.67 44.99 0.08 4.19 16 5 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 6 C -0.09 -3.42 4.80 30.64 0.15 -3.28 16 7 C 0.06 2.27 5.47 86.32 0.47 2.74 16 8 N -0.54 -22.94 4.51 -922.61 -4.16 -27.10 16 9 C 0.03 1.21 9.59 127.69 1.22 2.43 16 10 C 0.08 3.70 4.70 86.33 0.41 4.11 16 11 C 0.05 2.52 1.61 -11.49 -0.02 2.51 16 12 H 0.00 -0.04 6.50 -2.39 -0.02 -0.06 16 13 C -0.44 -23.64 6.97 25.60 0.18 -23.46 16 14 H 0.05 2.91 6.72 -2.91 -0.02 2.89 16 15 C 0.01 0.48 5.30 84.65 0.45 0.93 16 16 N -0.93 -54.56 11.33 21.45 0.24 -54.32 16 17 Si 0.94 45.90 29.54 68.60 2.03 47.92 16 18 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 21 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 22 H 0.07 1.90 8.12 -2.39 -0.02 1.89 16 23 H 0.07 1.99 6.36 -2.39 -0.02 1.97 16 24 H 0.05 2.28 6.21 -2.38 -0.01 2.26 16 25 H 0.08 2.38 8.12 -2.39 -0.02 2.36 16 26 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 2.25 6.55 -2.39 -0.02 2.23 16 28 H 0.06 2.64 6.82 -2.39 -0.02 2.63 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 2.59 8.09 -2.39 -0.02 2.57 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 2.37 8.09 -2.39 -0.02 2.35 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 4.12 6.05 -2.39 -0.01 4.11 16 35 H -0.02 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -61.06 272.37 0.44 -60.62 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.03 Total: 3.10 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 5.27 Total: -5.44 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -7.88 Total: -106.21 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -61.06 0.44 -60.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.033 kcal (2) G-P(sol) polarization free energy of solvation -61.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds