Wall clock time and date at job start Mon Mar 30 2020 02:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99912 * 2 1 4 4 H 1.08004 * 120.00369 * 202.34411 * 3 2 1 5 5 C 1.38815 * 119.99919 * 22.35072 * 3 2 1 6 6 N 1.31618 * 120.00079 * 11.33874 * 5 3 2 7 7 Si 1.86800 * 120.00215 * 191.34329 * 5 3 2 8 8 H 1.48503 * 109.47074 * 89.99283 * 7 5 3 9 9 H 1.48500 * 109.47478 * 209.99785 * 7 5 3 10 10 H 1.48505 * 109.46882 * 329.99673 * 7 5 3 11 11 C 1.46501 * 120.00185 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46914 * 269.99466 * 11 2 1 13 13 C 1.52993 * 109.47011 * 180.02562 * 12 11 2 14 14 N 1.46894 * 110.01923 * 58.61233 * 13 12 11 15 15 C 1.54271 * 110.03179 * 297.16969 * 13 12 11 16 16 C 1.54893 * 104.19464 * 217.10635 * 15 13 12 17 17 C 1.54883 * 102.74982 * 37.94204 * 16 15 13 18 18 C 1.53874 * 110.03162 * 180.02562 * 13 12 11 19 19 H 1.08998 * 109.46677 * 274.20752 * 1 2 3 20 20 H 1.08999 * 109.47185 * 34.20838 * 1 2 3 21 21 H 1.09001 * 109.46612 * 154.20952 * 1 2 3 22 22 H 0.97003 * 119.99773 * 180.02562 * 6 5 3 23 23 H 1.09000 * 109.47084 * 150.00031 * 11 2 1 24 24 H 1.08998 * 109.47284 * 29.99819 * 11 2 1 25 25 H 1.08998 * 109.47433 * 300.00262 * 12 11 2 26 26 H 1.09004 * 109.46711 * 59.99877 * 12 11 2 27 27 H 1.00901 * 110.99976 * 300.69670 * 14 13 12 28 28 H 1.00904 * 111.00359 * 64.64855 * 14 13 12 29 29 H 1.09000 * 110.48635 * 335.78293 * 15 13 12 30 30 H 1.08997 * 110.48613 * 98.43189 * 15 13 12 31 31 H 1.09002 * 110.75509 * 279.63058 * 16 15 13 32 32 H 1.08995 * 110.75404 * 156.25765 * 16 15 13 33 33 H 1.09001 * 110.49194 * 203.38085 * 17 16 15 34 34 H 1.09004 * 110.48716 * 80.73545 * 17 16 15 35 35 H 1.09000 * 110.03309 * 238.56480 * 18 13 12 36 36 H 1.08996 * 110.03291 * 0.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2211 -0.3556 5 6 1.5338 2.3429 0.4572 6 7 0.3841 2.2690 1.0937 7 14 2.3365 4.0048 0.1689 8 1 1.8678 4.5632 -1.1248 9 1 1.9680 4.9303 1.2702 10 1 3.8122 3.8420 0.1321 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 6 3.2182 -3.0355 1.4413 14 7 4.4900 -2.8810 0.7226 15 6 2.3663 -4.1380 0.7789 16 6 2.6773 -5.4084 1.6086 17 6 2.7809 -4.8569 3.0523 18 6 3.4813 -3.4929 2.8867 19 1 -0.3632 0.0754 1.0249 20 1 -0.3633 0.8499 -0.5777 21 1 -0.3632 -0.9253 -0.4471 22 1 -0.0464 3.0776 1.4128 23 1 3.1499 -1.1381 -0.5143 24 1 1.6085 -2.0282 -0.5147 25 1 3.0417 -0.9515 1.9559 26 1 1.5002 -1.8415 1.9556 27 1 4.3334 -2.5922 -0.2315 28 1 5.0994 -2.2343 1.2007 29 1 1.3065 -3.8910 0.8422 30 1 2.6649 -4.2784 -0.2600 31 1 3.6225 -5.8522 1.2960 32 1 1.8649 -6.1306 1.5284 33 1 3.3820 -5.5218 3.6725 34 1 1.7881 -4.7259 3.4828 35 1 4.5528 -3.6009 3.0550 36 1 3.0632 -2.7714 3.5886 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259743528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:06 Heat of formation + Delta-G solvation = 3.047165 kcal Electronic energy + Delta-G solvation = -14823.444472 eV Core-core repulsion = 12535.263681 eV Total energy + Delta-G solvation = -2288.180791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.86029 -35.54607 -32.98466 -31.18256 -28.76957 -28.53799 -26.11211 -25.59980 -22.94099 -20.90626 -20.07480 -18.54649 -16.71479 -15.59197 -15.04857 -14.87099 -14.58936 -13.97992 -13.66023 -13.08821 -12.81585 -12.49927 -12.17288 -11.54720 -11.17324 -10.92858 -10.89475 -10.83664 -10.77577 -10.67059 -10.36159 -10.34942 -10.24477 -10.05736 -9.81103 -9.68781 -8.53565 -8.29541 -6.71422 -5.70438 -3.15859 3.38158 3.44187 3.45528 4.50797 4.79503 4.83133 4.93246 5.24077 5.41709 5.51136 5.66851 5.70921 5.82828 5.88933 5.98700 6.03862 6.10298 6.20816 6.26302 6.32306 6.42809 6.47414 6.52290 6.58958 6.78045 6.89945 7.10102 7.41140 7.59570 7.74570 7.79645 7.81910 8.42516 9.26397 9.90340 10.39561 11.34768 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048206 B = 0.007347 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.698942 B = 3809.958497 C = 3960.634899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.604 5.604 3 C -0.252 4.252 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.154 3.846 12 C -0.160 4.160 13 C 0.115 3.885 14 N -0.839 5.839 15 C -0.108 4.108 16 C -0.119 4.119 17 C -0.121 4.121 18 C -0.114 4.114 19 H 0.027 0.973 20 H 0.043 0.957 21 H -0.005 1.005 22 H 0.252 0.748 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.339 0.661 28 H 0.336 0.664 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -11.783 1.201 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.327 5.327 3 C -0.382 4.382 4 H 0.084 0.916 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.026 3.974 12 C -0.202 4.202 13 C 0.021 3.979 14 N -0.368 5.368 15 C -0.146 4.146 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.153 4.153 19 H 0.045 0.955 20 H 0.062 0.938 21 H 0.013 0.987 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.148 0.852 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.105 -12.412 1.390 13.147 hybrid contribution 0.051 2.113 -0.037 2.114 sum 4.157 -10.299 1.353 11.188 Atomic orbital electron populations 1.20774 0.82634 0.95411 0.99152 1.43956 1.01891 1.00721 1.86115 1.19208 0.97862 0.85570 1.35582 0.91578 1.25027 0.97765 0.98494 0.98550 1.70071 1.17908 1.26945 1.40555 0.86254 0.78760 0.84178 0.77345 1.21503 1.21749 1.20573 1.20821 0.95252 0.88095 0.93220 1.23016 1.00181 0.95492 1.01539 1.21478 0.88980 0.94541 0.92857 1.59192 1.14625 1.56459 1.06558 1.22378 0.99113 0.94059 0.99067 1.22426 1.00924 0.97153 0.95108 1.22293 1.00149 0.96446 0.97000 1.22237 1.00598 0.96551 0.95867 0.95519 0.93786 0.98669 0.93818 0.94501 0.94554 0.92256 0.92453 0.84698 0.85158 0.91475 0.91640 0.91494 0.92415 0.92286 0.92025 0.91537 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 9.01 59.85 0.54 4.74 16 2 N -0.60 -15.53 2.93 -181.11 -0.53 -16.06 16 3 C -0.25 -7.06 9.67 -15.06 -0.15 -7.20 16 4 H 0.07 1.81 7.84 -52.48 -0.41 1.40 16 5 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 6 N -0.91 -26.98 10.58 55.49 0.59 -26.39 16 7 Si 0.90 22.16 29.57 -169.99 -5.03 17.14 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.15 3.17 5.15 -4.04 -0.02 3.15 16 12 C -0.16 -3.03 4.41 -26.73 -0.12 -3.15 16 13 C 0.11 1.72 0.88 -130.49 -0.11 1.61 16 14 N -0.84 -11.89 8.69 1.64 0.01 -11.88 16 15 C -0.11 -1.51 5.02 -25.07 -0.13 -1.64 16 16 C -0.12 -1.45 6.91 -24.74 -0.17 -1.62 16 17 C -0.12 -1.48 6.83 -25.10 -0.17 -1.66 16 18 C -0.11 -1.59 6.20 -25.63 -0.16 -1.75 16 19 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 20 H 0.04 1.20 7.19 -51.93 -0.37 0.82 16 21 H -0.01 -0.12 7.84 -51.93 -0.41 -0.52 16 22 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.04 0.74 6.56 -51.93 -0.34 0.40 16 24 H 0.04 0.70 6.99 -51.93 -0.36 0.34 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 27 H 0.34 4.83 7.15 -39.29 -0.28 4.54 16 28 H 0.34 4.66 9.01 -39.29 -0.35 4.30 16 29 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 30 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.90 7.91 -51.93 -0.41 0.48 16 36 H 0.06 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 280.80 15.07 4.23 4.23 Total: -1.00 -29.46 280.80 -7.51 -36.98 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.21 Total: 3.60 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.58 Total: -7.61 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.07 Total: -54.33 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.46 -7.51 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259743528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.022 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds