Wall clock time and date at job start Mon Mar 30 2020 02:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86801 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47586 * 274.98562 * 3 2 1 5 5 H 1.48504 * 109.47072 * 34.98894 * 3 2 1 6 6 H 1.48502 * 109.47352 * 154.98066 * 3 2 1 7 7 C 1.40333 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00008 * 186.03648 * 7 2 1 9 9 C 1.39757 * 120.00147 * 6.04266 * 7 2 1 10 10 N 1.32850 * 125.77593 * 354.21692 * 9 7 2 11 11 C 1.33095 * 108.65205 * 180.02562 * 10 9 7 12 12 Cl 1.73606 * 126.02257 * 179.97438 * 11 10 9 13 13 C 1.36117 * 107.95205 * 359.97438 * 11 10 9 14 14 C 1.50699 * 126.33454 * 179.73456 * 13 11 10 15 15 C 1.52994 * 117.50171 * 188.75079 * 14 13 11 16 16 C 1.53005 * 117.49590 * 120.08748 * 14 13 11 17 17 O 1.34626 * 107.33110 * 0.02562 * 13 11 10 18 18 H 0.97002 * 119.99609 * 359.97438 * 1 2 3 19 19 H 1.08998 * 115.55197 * 334.42478 * 14 13 11 20 20 H 1.09008 * 117.49889 * 0.02562 * 15 14 13 21 21 H 1.08995 * 117.50451 * 145.02432 * 15 14 13 22 22 H 1.09003 * 117.49462 * 214.98059 * 16 14 13 23 23 H 1.09000 * 117.50004 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3825 2.1073 -1.3947 5 1 1.4945 2.6200 0.8029 6 1 3.5866 1.4120 0.5921 7 6 2.0079 -1.2153 -0.0005 8 1 3.0834 -1.2179 0.0978 9 6 1.3150 -2.4222 -0.1285 10 7 -0.0061 -2.5611 -0.1478 11 6 -0.2964 -3.8530 -0.2825 12 17 -1.8894 -4.5389 -0.3588 13 6 0.8758 -4.5416 -0.3499 14 6 1.0276 -6.0335 -0.4983 15 6 2.4330 -6.6191 -0.3477 16 6 1.7768 -6.5485 -1.7289 17 8 1.8744 -3.6439 -0.2531 18 1 -0.4850 0.8401 0.0004 19 1 0.1921 -6.6299 -0.1318 20 1 3.2479 -5.9252 -0.1410 21 1 2.5222 -7.6008 0.1174 22 1 1.4344 -7.4838 -2.1717 23 1 2.1595 -5.8081 -2.4315 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259749620.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:04 Heat of formation + Delta-G solvation = 5.352707 kcal Electronic energy + Delta-G solvation = -11780.330502 eV Core-core repulsion = 9427.740907 eV Total energy + Delta-G solvation = -2352.589596 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.20255 -37.92706 -37.50432 -35.86048 -34.42110 -31.07194 -27.99703 -23.79265 -23.33751 -22.89553 -21.22241 -19.59712 -17.80063 -17.05650 -16.78215 -16.16916 -15.63273 -14.97899 -14.21844 -13.60681 -13.31301 -13.11741 -13.07507 -12.85911 -12.38942 -12.00981 -11.91928 -11.82709 -11.43594 -11.38232 -10.92781 -10.35933 -9.25500 -8.67223 -6.75709 0.86270 1.09549 1.40496 1.49631 1.59522 2.13563 2.22644 2.62264 3.06438 3.17082 3.78831 3.98103 4.18526 4.52657 4.65761 4.76304 4.92013 5.06158 5.11211 5.28138 5.43417 5.70944 5.99679 6.38346 6.57829 7.69386 8.28662 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.037893 B = 0.010108 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.749115 B = 2769.451243 C = 3423.318173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.029 3.971 3 Si 1.016 2.984 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.247 1.247 7 C -0.457 4.457 8 H 0.108 0.892 9 C 0.308 3.692 10 N -0.570 5.570 11 C 0.054 3.946 12 Cl -0.022 7.022 13 C -0.136 4.136 14 C -0.070 4.070 15 C -0.162 4.162 16 C -0.161 4.161 17 O -0.245 6.245 18 H 0.291 0.709 19 H 0.138 0.862 20 H 0.077 0.923 21 H 0.131 0.869 22 H 0.132 0.868 23 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -6.000 -1.184 6.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.193 4.193 3 Si 0.834 3.166 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.171 1.171 7 C -0.491 4.491 8 H 0.126 0.874 9 C 0.126 3.874 10 N -0.304 5.304 11 C -0.097 4.097 12 Cl 0.006 6.994 13 C -0.192 4.192 14 C -0.088 4.088 15 C -0.199 4.199 16 C -0.198 4.198 17 O -0.142 6.142 18 H 0.101 0.899 19 H 0.155 0.845 20 H 0.096 0.904 21 H 0.149 0.851 22 H 0.150 0.850 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.911 -5.456 -1.129 5.890 hybrid contribution 0.161 0.134 -0.025 0.211 sum 2.072 -5.323 -1.154 5.827 Atomic orbital electron populations 1.70088 1.09400 1.30750 1.28643 1.27113 0.95858 1.04567 0.91787 0.84702 0.78781 0.73496 0.79669 1.18356 1.18724 1.17052 1.18751 0.95931 0.86457 1.48009 0.87398 1.22517 0.86176 0.84205 0.94552 1.71112 1.12930 1.14456 1.31871 1.22055 0.86983 0.91973 1.08663 1.98229 1.21944 1.81964 1.97249 1.21984 0.84517 0.92053 1.20651 1.20160 0.98423 0.84387 1.05855 1.23028 0.93908 1.02828 1.00157 1.23126 1.02939 1.03096 0.90678 1.84436 1.36741 1.17510 1.75523 0.89854 0.84477 0.90432 0.85112 0.85026 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.98 11.90 21.89 0.26 -41.72 14 2 C 0.03 1.47 5.49 85.38 0.47 1.94 14 3 Si 1.02 36.91 29.57 68.60 2.03 38.94 14 4 H -0.26 -9.03 7.11 99.48 0.71 -8.33 14 5 H -0.26 -9.03 7.11 99.48 0.71 -8.33 14 6 H -0.25 -8.45 7.11 99.48 0.71 -7.74 14 7 C -0.46 -25.14 9.44 23.15 0.22 -24.92 14 8 H 0.11 5.42 7.86 -2.91 -0.02 5.40 14 9 C 0.31 18.22 7.73 84.91 0.66 18.88 14 10 N -0.57 -34.32 9.45 -300.23 -2.84 -37.16 14 11 C 0.05 2.82 7.72 84.01 0.65 3.47 14 12 Cl -0.02 -0.93 29.10 -2.72 -0.08 -1.01 14 13 C -0.14 -6.62 6.89 25.19 0.17 -6.45 14 14 C -0.07 -2.50 6.06 -11.54 -0.07 -2.57 14 15 C -0.16 -4.77 10.18 30.62 0.31 -4.45 14 16 C -0.16 -4.72 10.24 30.62 0.31 -4.41 14 17 O -0.24 -13.37 10.58 -12.04 -0.13 -13.49 14 18 H 0.29 14.18 8.29 -92.71 -0.77 13.41 14 19 H 0.14 4.31 8.14 -2.39 -0.02 4.29 14 20 H 0.08 2.59 7.99 -2.38 -0.02 2.57 14 21 H 0.13 2.84 8.14 -2.39 -0.02 2.82 14 22 H 0.13 2.85 8.14 -2.39 -0.02 2.83 14 23 H 0.07 2.48 8.14 -2.39 -0.02 2.46 14 Total: -1.00 -66.78 232.39 3.20 -63.58 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.23 Total: 9.38 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 2.72 Total: -18.52 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -2.58 Total: -78.88 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.13 Total: -13.49 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -66.78 3.20 -63.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259749620.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.935 kcal (2) G-P(sol) polarization free energy of solvation -66.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds