Wall clock time and date at job start Mon Mar 30 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31028 * 1 3 3 Si 1.86797 * 120.00399 * 2 1 4 4 H 1.48495 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46792 * 300.00439 * 3 2 1 6 6 H 1.48499 * 109.47013 * 59.99639 * 3 2 1 7 7 C 1.39808 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00424 * 200.20903 * 7 2 1 9 9 C 1.40819 * 119.99823 * 20.20433 * 7 2 1 10 10 C 1.42030 * 121.04453 * 217.88362 * 9 7 2 11 11 N 1.37942 * 120.62583 * 359.75457 * 10 9 7 12 12 N 1.32612 * 118.74624 * 179.72946 * 10 9 7 13 13 C 1.32724 * 121.03840 * 359.97438 * 12 10 9 14 14 S 1.76202 * 118.81546 * 179.97438 * 13 12 10 15 15 N 1.32781 * 122.36650 * 359.97438 * 13 12 10 16 16 C 1.32422 * 121.12298 * 0.04282 * 15 13 12 17 17 O 1.35343 * 120.58861 * 179.97438 * 16 15 13 18 18 H 0.96999 * 119.99829 * 359.97438 * 1 2 3 19 19 H 0.97008 * 119.99873 * 359.97438 * 11 10 9 20 20 H 0.96998 * 120.00454 * 179.97438 * 11 10 9 21 21 H 1.40996 * 100.00143 * 90.00351 * 14 13 12 22 22 H 0.96695 * 114.00087 * 274.11161 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6176 0.0000 4 1 3.7043 1.3462 -0.0006 5 1 1.8855 2.3964 -1.2125 6 1 1.8856 2.3964 1.2125 7 6 2.0093 -1.2108 -0.0005 8 1 3.0393 -1.2399 0.3225 9 6 1.3701 -2.3926 -0.4223 10 6 1.6202 -3.6317 0.2252 11 7 2.5025 -3.7064 1.2829 12 7 0.9892 -4.7154 -0.2060 13 6 0.1379 -4.6527 -1.2223 14 16 -0.6678 -6.1291 -1.7476 15 7 -0.1285 -3.5175 -1.8575 16 6 0.4516 -2.3816 -1.5014 17 8 0.1726 -1.2308 -2.1567 18 1 -0.4850 0.8400 0.0004 19 1 2.9592 -2.9078 1.5909 20 1 2.6664 -4.5573 1.7188 21 1 -1.8189 -6.0823 -0.9347 22 1 0.7106 -1.0880 -2.9474 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798747.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:29 Heat of formation + Delta-G solvation = -20.528221 kcal Electronic energy + Delta-G solvation = -12105.143507 eV Core-core repulsion = 9785.768088 eV Total energy + Delta-G solvation = -2319.375420 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.04586 -37.91966 -36.28491 -35.06487 -32.45405 -31.21677 -27.60485 -24.28698 -23.62750 -19.94925 -19.53084 -18.88279 -18.00848 -17.09268 -16.97644 -16.10014 -15.61528 -15.24848 -14.75033 -14.53587 -13.74651 -13.15211 -12.86595 -12.61815 -12.40290 -12.03592 -11.75493 -11.29290 -10.73059 -10.08196 -9.84428 -9.07982 -9.01579 -8.71640 -6.37250 0.22519 0.80050 0.90814 1.43895 1.47197 1.60340 1.69988 2.19384 2.72282 3.03191 3.24974 3.51627 4.39797 4.72319 4.94571 5.13835 5.41732 5.95053 6.12534 6.59266 6.64032 6.79473 7.21258 7.29572 7.76615 8.23549 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.048744 B = 0.010823 C = 0.009265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.287107 B = 2586.531276 C = 3021.468244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.045 3.955 3 Si 0.988 3.012 4 H -0.248 1.248 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.444 4.444 8 H 0.105 0.895 9 C -0.022 4.022 10 C 0.336 3.664 11 N -0.825 5.825 12 N -0.542 5.542 13 C 0.165 3.835 14 S -0.050 6.050 15 N -0.522 5.522 16 C 0.220 3.780 17 O -0.457 6.457 18 H 0.292 0.708 19 H 0.414 0.586 20 H 0.403 0.597 21 H 0.083 0.917 22 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.730 0.457 0.999 4.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.176 4.176 3 Si 0.809 3.191 4 H -0.171 1.171 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.474 4.474 8 H 0.123 0.877 9 C -0.034 4.034 10 C 0.082 3.918 11 N -0.375 5.375 12 N -0.271 5.271 13 C -0.206 4.206 14 S 0.102 5.898 15 N -0.251 5.251 16 C 0.031 3.969 17 O -0.260 6.260 18 H 0.102 0.898 19 H 0.246 0.754 20 H 0.233 0.767 21 H 0.047 0.953 22 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.284 -0.927 0.606 3.466 hybrid contribution 0.544 2.332 0.955 2.578 sum 3.828 1.405 1.561 4.367 Atomic orbital electron populations 1.69862 1.09769 1.31403 1.28800 1.26732 0.95042 1.04457 0.91405 0.85052 0.79706 0.75784 0.78580 1.17057 1.19551 1.19602 1.19493 0.99322 0.91226 1.37331 0.87698 1.19176 0.95451 0.94214 0.94568 1.19077 0.93356 0.89202 0.90171 1.41389 1.47907 1.13914 1.34326 1.67820 1.12200 1.30562 1.16476 1.22516 1.04564 0.94340 0.99145 1.85648 1.25182 1.23624 1.55297 1.67712 1.25691 0.99106 1.32565 1.19235 0.99464 0.84036 0.94137 1.84828 1.63659 1.34764 1.42761 0.89762 0.75371 0.76697 0.95257 0.76957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.43 11.19 21.81 0.24 -38.18 14 2 C 0.05 2.02 4.47 85.19 0.38 2.40 14 3 Si 0.99 33.40 29.61 68.60 2.03 35.43 14 4 H -0.25 -7.83 7.11 99.48 0.71 -7.12 14 5 H -0.27 -9.17 7.11 99.48 0.71 -8.47 14 6 H -0.27 -8.98 7.11 99.48 0.71 -8.27 14 7 C -0.44 -20.36 8.14 23.28 0.19 -20.17 14 8 H 0.11 4.29 7.28 -2.91 -0.02 4.27 14 9 C -0.02 -1.11 5.42 -20.85 -0.11 -1.23 14 10 C 0.34 15.84 7.86 134.08 1.05 16.90 14 11 N -0.83 -29.88 8.97 -54.10 -0.49 -30.37 14 12 N -0.54 -26.58 10.39 -192.42 -2.00 -28.58 14 13 C 0.16 8.26 7.91 180.31 1.43 9.68 14 14 S -0.05 -2.03 26.14 -56.49 -1.48 -3.50 14 15 N -0.52 -27.74 10.38 -307.74 -3.19 -30.94 14 16 C 0.22 11.60 7.32 85.46 0.63 12.23 14 17 O -0.46 -22.41 10.52 -86.32 -0.91 -23.32 14 18 H 0.29 13.25 8.30 -92.71 -0.77 12.48 14 19 H 0.41 13.41 7.41 -92.70 -0.69 12.72 14 20 H 0.40 12.51 8.95 -92.71 -0.83 11.68 14 21 H 0.08 3.13 9.55 73.80 0.70 3.84 14 22 H 0.38 14.88 9.06 -74.06 -0.67 14.21 14 Total: -1.00 -61.93 220.17 -2.38 -64.31 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.15 Total: 35.35 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 3.56 Total: 19.81 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.43 Total: -128.07 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.91 Total: -23.32 kcal Atomic # 14 Polarization: 33.40 SS G_CDS: 2.03 Total: 35.43 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -1.48 Total: -3.50 kcal Total: -61.93 -2.38 -64.31 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798747.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.782 kcal (2) G-P(sol) polarization free energy of solvation -61.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds