Wall clock time and date at job start Mon Mar 30 2020 02:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46842 * 111.00505 * 2 1 4 4 C 1.53038 * 109.52829 * 174.16098 * 3 2 1 5 5 C 1.53113 * 109.27607 * 59.17754 * 4 3 2 6 6 C 1.53123 * 109.16496 * 302.34833 * 5 4 3 7 7 H 1.08991 * 109.50072 * 297.71477 * 6 5 4 8 8 C 1.53003 * 109.50132 * 177.63392 * 6 5 4 9 9 H 1.09001 * 109.46513 * 184.77107 * 8 6 5 10 10 C 1.50697 * 109.47304 * 304.76535 * 8 6 5 11 11 H 1.08006 * 120.00137 * 0.02562 * 10 8 6 12 12 C 1.37878 * 120.00197 * 180.02562 * 10 8 6 13 13 N 1.31517 * 119.99848 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 120.00164 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47264 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47058 * 120.00133 * 14 12 10 17 17 H 1.48500 * 109.47360 * 240.00078 * 14 12 10 18 18 C 1.52999 * 109.47037 * 64.77130 * 8 6 5 19 19 N 1.46897 * 109.47426 * 63.10585 * 18 8 6 20 20 C 1.46855 * 110.99877 * 235.78951 * 2 1 3 21 21 H 1.08995 * 109.47318 * 56.04226 * 1 2 3 22 22 H 1.09003 * 109.47188 * 176.04742 * 1 2 3 23 23 H 1.09001 * 109.46813 * 296.04599 * 1 2 3 24 24 H 1.09001 * 109.46348 * 294.17944 * 3 2 1 25 25 H 1.09004 * 109.45934 * 54.14403 * 3 2 1 26 26 H 1.08993 * 109.50515 * 179.12220 * 4 3 2 27 27 H 1.09006 * 109.49968 * 299.20014 * 4 3 2 28 28 H 1.09008 * 109.52276 * 62.25430 * 5 4 3 29 29 H 1.09003 * 109.52700 * 182.43885 * 5 4 3 30 30 H 0.96993 * 119.99973 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.46725 * 183.10720 * 18 8 6 32 32 H 1.08994 * 109.46888 * 303.10142 * 18 8 6 33 33 H 1.00902 * 110.99803 * 56.04052 * 19 18 8 34 34 H 1.00895 * 110.99860 * 179.97438 * 19 18 8 35 35 H 1.08997 * 109.46215 * 305.85878 * 20 2 1 36 36 H 1.08994 * 109.46134 * 65.82421 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5368 -1.0143 6 6 3.5180 -0.8716 -1.0209 7 1 3.7812 -1.3837 -0.0954 8 6 4.0687 -1.6562 -2.2134 9 1 3.5779 -2.6280 -2.2667 10 6 3.8050 -0.8900 -3.4839 11 1 3.2959 0.0618 -3.4448 12 6 4.2136 -1.4038 -4.6964 13 7 4.8330 -2.5629 -4.7441 14 14 3.8860 -0.4543 -6.2713 15 1 3.1789 0.8111 -5.9485 16 1 5.1755 -0.1437 -6.9393 17 1 3.0438 -1.2750 -7.1781 18 6 5.5759 -1.8549 -2.0410 19 7 5.8292 -2.6655 -0.8424 20 6 1.9952 -0.7708 -1.1338 21 1 -0.3634 0.5740 -0.8523 22 1 -0.3634 -1.0252 -0.0708 23 1 -0.3633 0.4513 0.9233 24 1 1.7325 1.8608 -0.9376 25 1 1.5634 1.9256 0.8330 26 1 3.9100 2.3510 0.1310 27 1 3.7813 0.8572 1.0910 28 1 3.8887 1.0354 -1.9560 29 1 5.1998 0.4712 -0.8906 30 1 5.1201 -2.9246 -5.5971 31 1 5.9775 -2.3653 -2.9164 32 1 6.0602 -0.8845 -1.9324 33 1 5.3375 -3.5453 -0.8904 34 1 6.8183 -2.8112 -0.7068 35 1 1.5633 -1.7715 -1.1243 36 1 1.7324 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259922536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:18 Heat of formation + Delta-G solvation = -13.567399 kcal Electronic energy + Delta-G solvation = -15187.470826 eV Core-core repulsion = 12898.569574 eV Total energy + Delta-G solvation = -2288.901252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.59150 -35.40417 -32.44442 -32.07372 -30.63707 -27.03560 -26.07178 -23.99796 -22.39240 -21.94272 -19.62698 -18.61228 -16.17045 -15.29348 -14.65864 -14.43075 -14.31481 -13.91552 -13.50359 -13.13541 -13.12065 -12.40205 -12.01861 -11.89822 -11.53965 -11.41628 -10.99573 -10.88811 -10.65292 -10.44000 -10.20780 -10.03772 -9.93715 -9.16428 -8.99349 -8.66272 -8.37054 -7.75879 -7.48692 -5.98772 -4.04437 3.26839 3.35712 3.39032 4.42295 4.49298 5.28344 5.43447 5.52477 5.58950 5.77289 5.83566 5.87183 6.02883 6.11006 6.15026 6.27463 6.33174 6.54588 6.65682 6.69556 6.82141 6.94956 7.09062 7.13615 7.29624 7.46850 7.58302 7.67655 7.72450 7.95903 8.03249 8.21713 8.44051 8.55857 9.01191 9.59579 11.05143 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.011320 C = 0.009384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.703057 B = 2472.864191 C = 2983.182178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.060 3.940 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.061 4.061 7 H 0.065 0.935 8 C 0.058 3.942 9 H 0.021 0.979 10 C -0.503 4.503 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.885 3.115 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.060 3.940 19 N -0.857 5.857 20 C 0.066 3.934 21 H 0.019 0.981 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.027 0.973 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.258 0.742 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.328 0.672 34 H 0.316 0.684 35 H 0.061 0.939 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 4.080 6.848 8.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.068 4.068 4 C -0.155 4.155 5 C -0.143 4.143 6 C -0.080 4.080 7 H 0.083 0.917 8 C 0.039 3.961 9 H 0.039 0.961 10 C -0.541 4.541 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.714 3.286 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.070 4.070 19 N -0.384 5.384 20 C -0.061 4.061 21 H 0.037 0.963 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.388 4.354 7.528 9.333 hybrid contribution -0.022 0.177 -2.464 2.470 sum -3.409 4.532 5.064 7.603 Atomic orbital electron populations 1.22298 0.88718 1.01387 0.99762 1.61999 1.06363 1.13473 1.45332 1.22012 0.96226 0.89357 0.99192 1.21633 0.94047 0.99462 1.00375 1.21587 0.99497 0.96332 0.96925 1.21033 0.91538 0.95478 0.99976 0.91666 1.18633 0.91109 0.95054 0.91308 0.96055 1.21295 1.36447 1.05488 0.90895 0.92326 1.24993 0.95308 0.94906 0.98929 1.69884 1.40152 1.18051 1.25151 0.86637 0.77902 0.80150 0.83924 1.19881 1.21161 1.21176 1.22054 0.99807 0.95483 0.89636 1.59060 1.12633 1.22359 1.44347 1.22188 0.97094 0.96657 0.90156 0.96267 0.91797 0.92276 0.95495 0.92155 0.92858 0.91907 0.91794 0.92439 0.93245 0.92182 0.93814 0.86165 0.87411 0.92026 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.62 60.06 0.58 0.97 16 2 N -0.55 -9.57 4.91 -242.97 -1.19 -10.76 16 3 C 0.06 0.98 5.46 -3.84 -0.02 0.96 16 4 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 5 C -0.11 -2.10 4.70 -26.61 -0.12 -2.22 16 6 C -0.06 -1.29 2.04 -90.54 -0.19 -1.48 16 7 H 0.06 1.42 7.56 -51.93 -0.39 1.03 16 8 C 0.06 1.40 1.72 -91.77 -0.16 1.25 16 9 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 10 C -0.50 -13.17 7.09 -34.44 -0.24 -13.42 16 11 H 0.06 1.54 5.67 -52.48 -0.30 1.25 16 12 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 13 N -0.89 -24.93 11.30 55.43 0.63 -24.31 16 14 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.06 1.39 5.83 -3.83 -0.02 1.37 16 19 N -0.86 -16.85 8.92 -10.37 -0.09 -16.94 16 20 C 0.07 1.32 4.57 -3.83 -0.02 1.30 16 21 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 22 H 0.06 0.89 8.02 -51.93 -0.42 0.47 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.86 8.12 -51.93 -0.42 0.43 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.37 6.26 -51.92 -0.33 1.04 16 29 H 0.06 1.16 6.62 -51.93 -0.34 0.82 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.06 1.57 6.00 -51.93 -0.31 1.26 16 32 H 0.04 1.03 6.47 -51.93 -0.34 0.69 16 33 H 0.33 6.31 8.99 -39.29 -0.35 5.96 16 34 H 0.32 5.51 9.08 -39.29 -0.36 5.15 16 35 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 36 H 0.04 0.86 6.90 -51.93 -0.36 0.51 16 LS Contribution 273.31 15.07 4.12 4.12 Total: -1.00 -27.19 273.31 -8.02 -35.20 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.00 Total: 8.53 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.45 Total: -11.88 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.66 Total: -52.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.19 -8.02 -35.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.637 kcal (2) G-P(sol) polarization free energy of solvation -27.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds