Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46847 * 111.00181 * 2 1 4 4 C 1.53037 * 109.52736 * 185.84623 * 3 2 1 5 5 C 1.53119 * 109.30660 * 300.79981 * 4 3 2 6 6 C 1.53202 * 109.11864 * 57.63463 * 5 4 3 7 7 H 1.09002 * 109.52466 * 62.33811 * 6 5 4 8 8 C 1.53006 * 109.49525 * 182.41903 * 6 5 4 9 9 H 1.08995 * 109.47274 * 304.94045 * 8 6 5 10 10 C 1.50701 * 109.46407 * 64.93806 * 8 6 5 11 11 H 1.07995 * 120.00613 * 0.02562 * 10 8 6 12 12 C 1.37880 * 119.99811 * 179.97438 * 10 8 6 13 13 N 1.31516 * 119.99886 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00287 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46790 * 90.00160 * 14 12 10 16 16 H 1.48494 * 109.47228 * 210.00269 * 14 12 10 17 17 H 1.48499 * 109.46743 * 330.00307 * 14 12 10 18 18 C 1.52996 * 109.47063 * 184.93479 * 8 6 5 19 19 N 1.46907 * 109.46909 * 63.03467 * 18 8 6 20 20 C 1.46846 * 111.00482 * 124.21031 * 2 1 3 21 21 H 1.08993 * 109.47855 * 63.95174 * 1 2 3 22 22 H 1.09005 * 109.47260 * 183.95945 * 1 2 3 23 23 H 1.09004 * 109.46970 * 303.94857 * 1 2 3 24 24 H 1.08996 * 109.46384 * 65.82233 * 3 2 1 25 25 H 1.09007 * 109.45971 * 305.85707 * 3 2 1 26 26 H 1.08995 * 109.50728 * 60.75615 * 4 3 2 27 27 H 1.08997 * 109.50647 * 180.84194 * 4 3 2 28 28 H 1.09006 * 109.52395 * 177.57834 * 5 4 3 29 29 H 1.09005 * 109.52564 * 297.76943 * 5 4 3 30 30 H 0.97006 * 120.00377 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.46676 * 183.02833 * 18 8 6 32 32 H 1.08996 * 109.47490 * 303.03249 * 18 8 6 33 33 H 1.00896 * 110.99925 * 56.04486 * 19 18 8 34 34 H 1.00900 * 110.99688 * 179.97438 * 19 18 8 35 35 H 1.08997 * 109.46427 * 294.17356 * 20 2 1 36 36 H 1.09002 * 109.45783 * 54.15521 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1469 5 6 4.1196 0.5375 1.0141 6 6 3.5181 -0.8714 1.0207 7 1 3.7813 -1.3842 0.0955 8 6 4.0682 -1.6559 2.2136 9 1 5.1576 -1.6498 2.1814 10 6 3.5999 -1.0153 3.4948 11 1 2.9725 -0.1370 3.4616 12 6 3.9717 -1.5513 4.7096 13 7 4.7354 -2.6213 4.7501 14 14 3.3920 -0.7570 6.2978 15 1 2.0984 -1.3592 6.7089 16 1 4.4032 -0.9820 7.3617 17 1 3.2135 0.7018 6.0851 18 6 3.5641 -3.0991 2.1511 19 7 4.0806 -3.7460 0.9374 20 6 1.9953 -0.7708 1.1337 21 1 -0.3634 0.4512 -0.9232 22 1 -0.3634 -1.0252 0.0710 23 1 -0.3633 0.5739 0.8525 24 1 1.7324 1.8608 0.9375 25 1 1.5633 1.9257 -0.8330 26 1 3.7813 0.8568 -1.0907 27 1 3.9098 2.3513 -0.1319 28 1 5.2006 0.4726 0.8899 29 1 3.8896 1.0360 1.9558 30 1 4.9973 -2.9982 5.6047 31 1 3.9118 -3.6437 3.0290 32 1 2.4744 -3.1028 2.1291 33 1 5.0879 -3.6981 0.9029 34 1 3.7619 -4.7011 0.8732 35 1 1.7326 -0.2709 2.0660 36 1 1.5636 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259922553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = -13.399289 kcal Electronic energy + Delta-G solvation = -15222.729656 eV Core-core repulsion = 12933.835693 eV Total energy + Delta-G solvation = -2288.893962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.59202 -35.30986 -32.62825 -32.08934 -30.53301 -26.88784 -26.16074 -23.98742 -22.62533 -21.73722 -19.56884 -18.64816 -16.26227 -15.31164 -14.66665 -14.32546 -14.29651 -13.88548 -13.61750 -13.14432 -12.93334 -12.30986 -12.15297 -11.89895 -11.61193 -11.14540 -11.07028 -10.98280 -10.71545 -10.45023 -10.20312 -10.06576 -9.94375 -9.18032 -8.97872 -8.69503 -8.38206 -7.69258 -7.47979 -5.98735 -4.04682 3.27682 3.35199 3.38038 4.42215 4.53156 5.28048 5.43390 5.52328 5.58736 5.77688 5.83497 5.88097 6.02074 6.14138 6.17611 6.24776 6.33024 6.52272 6.66959 6.72700 6.77610 6.91406 7.07539 7.15802 7.25360 7.46770 7.58395 7.70034 7.73451 7.97495 8.02801 8.22342 8.44196 8.55246 9.00724 9.59328 11.05003 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026760 B = 0.011258 C = 0.009759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.089799 B = 2486.598180 C = 2868.450361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.547 5.547 3 C 0.060 3.940 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.062 4.062 7 H 0.065 0.935 8 C 0.058 3.942 9 H 0.024 0.976 10 C -0.504 4.504 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.886 3.114 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.059 3.941 19 N -0.857 5.857 20 C 0.071 3.929 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.018 0.982 24 H 0.026 0.974 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.258 0.742 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.328 0.672 34 H 0.317 0.683 35 H 0.039 0.961 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 3.613 -6.800 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.068 4.068 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.081 4.081 7 H 0.084 0.916 8 C 0.039 3.961 9 H 0.042 0.958 10 C -0.543 4.543 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.714 3.286 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.071 4.071 19 N -0.383 5.383 20 C -0.056 4.056 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.057 0.943 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.129 3.845 -7.472 9.363 hybrid contribution -0.171 0.098 2.470 2.478 sum -4.299 3.943 -5.002 7.685 Atomic orbital electron populations 1.22284 0.88760 1.01383 0.99657 1.61998 1.06336 1.13215 1.45654 1.22005 0.96049 0.89594 0.99189 1.21609 0.94269 0.99407 1.00104 1.21622 0.99029 0.96957 0.97278 1.21053 0.92584 0.94439 1.00008 0.91633 1.18650 0.95703 0.90297 0.91436 0.95799 1.21250 1.30742 1.11819 0.90450 0.92424 1.24989 0.95085 0.95038 0.98962 1.69874 1.36335 1.21780 1.25227 0.86694 0.78408 0.79833 0.83680 1.20839 1.21335 1.20002 1.22076 0.97439 0.97967 0.89634 1.59054 1.14622 1.20475 1.44163 1.22186 0.96736 0.96853 0.89786 0.92341 0.91798 0.96347 0.95528 0.92153 0.91903 0.92788 0.92974 0.91773 0.93178 0.92158 0.94009 0.86184 0.87397 0.94254 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.62 60.06 0.58 0.99 16 2 N -0.55 -9.72 4.91 -242.97 -1.19 -10.91 16 3 C 0.06 0.97 5.46 -3.83 -0.02 0.95 16 4 C -0.12 -1.91 6.09 -26.65 -0.16 -2.07 16 5 C -0.11 -2.17 5.14 -26.57 -0.14 -2.31 16 6 C -0.06 -1.31 2.05 -90.49 -0.19 -1.49 16 7 H 0.07 1.43 7.55 -51.93 -0.39 1.04 16 8 C 0.06 1.41 1.72 -91.77 -0.16 1.25 16 9 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 10 C -0.50 -13.23 7.09 -34.44 -0.24 -13.47 16 11 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 12 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 13 N -0.89 -24.93 11.30 55.43 0.63 -24.30 16 14 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.06 1.36 5.84 -3.82 -0.02 1.34 16 19 N -0.86 -16.89 8.91 -10.37 -0.09 -16.98 16 20 C 0.07 1.44 4.18 -3.84 -0.02 1.43 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 23 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.86 8.12 -51.92 -0.42 0.44 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.35 6.89 -51.93 -0.36 1.00 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.06 1.57 5.99 -51.93 -0.31 1.26 16 32 H 0.04 0.99 6.45 -51.93 -0.34 0.65 16 33 H 0.33 6.30 8.99 -39.29 -0.35 5.95 16 34 H 0.32 5.54 9.08 -39.29 -0.36 5.19 16 35 H 0.04 0.87 6.28 -51.93 -0.33 0.54 16 36 H 0.07 1.42 6.44 -51.93 -0.33 1.09 16 LS Contribution 273.26 15.07 4.12 4.12 Total: -1.00 -27.22 273.26 -8.02 -35.24 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.00 Total: 8.66 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.46 Total: -11.85 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.66 Total: -52.20 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.22 -8.02 -35.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.844 kcal (2) G-P(sol) polarization free energy of solvation -27.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds