Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46847 * 111.00181 * 2 1 4 4 C 1.53037 * 109.52736 * 185.84623 * 3 2 1 5 5 C 1.53119 * 109.30660 * 300.79981 * 4 3 2 6 6 C 1.53202 * 109.11864 * 57.63463 * 5 4 3 7 7 H 1.09002 * 109.52466 * 62.33811 * 6 5 4 8 8 C 1.53006 * 109.49525 * 182.41903 * 6 5 4 9 9 H 1.08995 * 109.47274 * 304.94045 * 8 6 5 10 10 C 1.50701 * 109.46407 * 64.93806 * 8 6 5 11 11 H 1.07995 * 120.00613 * 0.02562 * 10 8 6 12 12 C 1.37880 * 119.99811 * 179.97438 * 10 8 6 13 13 N 1.31516 * 119.99886 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00287 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46790 * 90.00160 * 14 12 10 16 16 H 1.48494 * 109.47228 * 210.00269 * 14 12 10 17 17 H 1.48499 * 109.46743 * 330.00307 * 14 12 10 18 18 C 1.52996 * 109.47063 * 184.93479 * 8 6 5 19 19 N 1.46907 * 109.46909 * 63.03467 * 18 8 6 20 20 C 1.46846 * 111.00482 * 124.21031 * 2 1 3 21 21 H 1.08993 * 109.47855 * 63.95174 * 1 2 3 22 22 H 1.09005 * 109.47260 * 183.95945 * 1 2 3 23 23 H 1.09004 * 109.46970 * 303.94857 * 1 2 3 24 24 H 1.08996 * 109.46384 * 65.82233 * 3 2 1 25 25 H 1.09007 * 109.45971 * 305.85707 * 3 2 1 26 26 H 1.08995 * 109.50728 * 60.75615 * 4 3 2 27 27 H 1.08997 * 109.50647 * 180.84194 * 4 3 2 28 28 H 1.09006 * 109.52395 * 177.57834 * 5 4 3 29 29 H 1.09005 * 109.52564 * 297.76943 * 5 4 3 30 30 H 0.97006 * 120.00377 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.46676 * 183.02833 * 18 8 6 32 32 H 1.08996 * 109.47490 * 303.03249 * 18 8 6 33 33 H 1.00896 * 110.99925 * 56.04486 * 19 18 8 34 34 H 1.00900 * 110.99688 * 179.97438 * 19 18 8 35 35 H 1.08997 * 109.46427 * 294.17356 * 20 2 1 36 36 H 1.09002 * 109.45783 * 54.15521 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1469 5 6 4.1196 0.5375 1.0141 6 6 3.5181 -0.8714 1.0207 7 1 3.7813 -1.3842 0.0955 8 6 4.0682 -1.6559 2.2136 9 1 5.1576 -1.6498 2.1814 10 6 3.5999 -1.0153 3.4948 11 1 2.9725 -0.1370 3.4616 12 6 3.9717 -1.5513 4.7096 13 7 4.7354 -2.6213 4.7501 14 14 3.3920 -0.7570 6.2978 15 1 2.0984 -1.3592 6.7089 16 1 4.4032 -0.9820 7.3617 17 1 3.2135 0.7018 6.0851 18 6 3.5641 -3.0991 2.1511 19 7 4.0806 -3.7460 0.9374 20 6 1.9953 -0.7708 1.1337 21 1 -0.3634 0.4512 -0.9232 22 1 -0.3634 -1.0252 0.0710 23 1 -0.3633 0.5739 0.8525 24 1 1.7324 1.8608 0.9375 25 1 1.5633 1.9257 -0.8330 26 1 3.7813 0.8568 -1.0907 27 1 3.9098 2.3513 -0.1319 28 1 5.2006 0.4726 0.8899 29 1 3.8896 1.0360 1.9558 30 1 4.9973 -2.9982 5.6047 31 1 3.9118 -3.6437 3.0290 32 1 2.4744 -3.1028 2.1291 33 1 5.0879 -3.6981 0.9029 34 1 3.7619 -4.7011 0.8732 35 1 1.7326 -0.2709 2.0660 36 1 1.5636 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259922553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = -32.608028 kcal Electronic energy + Delta-G solvation = -15223.562609 eV Core-core repulsion = 12933.835693 eV Total energy + Delta-G solvation = -2289.726916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14073 -37.04065 -34.15076 -34.04705 -32.13380 -28.69935 -27.50420 -25.95310 -24.19856 -23.23076 -21.19703 -20.43658 -18.17076 -16.90995 -16.50495 -16.02074 -15.79320 -15.34928 -15.18668 -14.84633 -14.59250 -13.86981 -13.82998 -13.55744 -13.03103 -12.89234 -12.73911 -12.56154 -12.49499 -12.12715 -12.03892 -11.67689 -11.59684 -10.91467 -10.74958 -10.54731 -10.41115 -9.25842 -9.12098 -8.04880 -6.17070 1.37754 1.40142 1.48445 2.42832 3.15019 3.21809 4.05775 4.13502 4.15678 4.21185 4.42754 4.58090 4.66505 4.68893 4.75775 4.88976 4.97736 5.02038 5.03877 5.13997 5.14989 5.24262 5.30775 5.50063 5.50653 5.59812 5.71426 5.99668 5.99935 6.25586 6.33718 6.40695 6.59716 6.79917 7.01027 7.49191 8.96741 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026760 B = 0.011258 C = 0.009759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.089799 B = 2486.598180 C = 2868.450361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.554 5.554 3 C 0.057 3.943 4 C -0.109 4.109 5 C -0.110 4.110 6 C -0.054 4.054 7 H 0.061 0.939 8 C 0.060 3.940 9 H -0.008 1.008 10 C -0.509 4.509 11 H 0.053 0.947 12 C 0.013 3.987 13 N -0.918 5.918 14 Si 0.942 3.058 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.271 1.271 18 C 0.073 3.927 19 N -0.846 5.846 20 C 0.085 3.915 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.257 0.743 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.332 0.668 34 H 0.333 0.667 35 H 0.016 0.984 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 4.691 -7.878 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.279 5.279 3 C -0.070 4.070 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.073 4.073 7 H 0.079 0.921 8 C 0.041 3.959 9 H 0.010 0.990 10 C -0.548 4.548 11 H 0.071 0.929 12 C -0.185 4.185 13 N -0.558 5.558 14 Si 0.769 3.231 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.058 4.058 19 N -0.374 5.374 20 C -0.043 4.043 21 H 0.104 0.896 22 H 0.082 0.918 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.034 0.966 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.079 4.924 -8.568 11.111 hybrid contribution 0.129 -0.253 2.757 2.772 sum -4.950 4.671 -5.810 8.949 Atomic orbital electron populations 1.22377 0.86878 1.01851 1.01075 1.61998 1.08135 1.13971 1.43768 1.22114 0.95940 0.88893 1.00084 1.21569 0.94384 1.00220 0.98478 1.21569 0.99016 0.96262 0.97933 1.20894 0.93388 0.94974 0.98041 0.92096 1.18576 0.93720 0.91380 0.92252 0.98984 1.21475 1.30252 1.11588 0.91494 0.92884 1.25664 0.95424 0.95604 1.01825 1.70004 1.37337 1.22818 1.25668 0.85791 0.77936 0.79110 0.80250 1.20433 1.21214 1.19563 1.21742 0.96876 0.97420 0.89742 1.58935 1.14959 1.21589 1.41899 1.21890 0.95931 0.96490 0.89954 0.89640 0.91755 0.96269 0.96291 0.89049 0.91348 0.90276 0.93328 0.93832 0.93354 0.95161 0.94591 0.85660 0.85600 0.96567 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.62 127.69 1.23 1.95 16 2 N -0.55 -18.52 4.91 -922.61 -4.53 -23.05 16 3 C 0.06 1.71 5.46 86.33 0.47 2.18 16 4 C -0.11 -3.30 6.09 30.65 0.19 -3.11 16 5 C -0.11 -4.25 5.14 30.70 0.16 -4.09 16 6 C -0.05 -2.28 2.05 -10.71 -0.02 -2.30 16 7 H 0.06 2.63 7.55 -2.39 -0.02 2.61 16 8 C 0.06 2.96 1.72 -11.54 -0.02 2.94 16 9 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 10 C -0.51 -27.23 7.09 25.60 0.18 -27.05 16 11 H 0.05 2.84 5.68 -2.91 -0.02 2.82 16 12 C 0.01 0.70 5.30 84.66 0.45 1.15 16 13 N -0.92 -52.27 11.30 21.45 0.24 -52.03 16 14 Si 0.94 43.52 29.54 68.60 2.03 45.55 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 C 0.07 3.44 5.84 86.30 0.50 3.95 16 19 N -0.85 -33.10 8.91 -186.71 -1.66 -34.76 16 20 C 0.08 3.41 4.18 86.33 0.36 3.77 16 21 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.06 1.74 8.02 -2.38 -0.02 1.72 16 23 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.09 2.20 8.12 -2.38 -0.02 2.18 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.04 1.84 6.89 -2.38 -0.02 1.82 16 30 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 31 H 0.03 1.62 5.99 -2.39 -0.01 1.61 16 32 H 0.04 1.72 6.45 -2.39 -0.02 1.71 16 33 H 0.33 12.73 8.99 -89.70 -0.81 11.92 16 34 H 0.33 11.36 9.08 -89.69 -0.81 10.54 16 35 H 0.02 0.72 6.28 -2.39 -0.02 0.71 16 36 H 0.05 2.31 6.44 -2.39 -0.02 2.30 16 Total: -1.00 -58.14 273.26 -0.98 -59.12 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.56 Total: 25.79 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 3.50 Total: -20.62 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -5.95 Total: -109.84 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -58.14 -0.98 -59.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.513 kcal (2) G-P(sol) polarization free energy of solvation -58.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds