Wall clock time and date at job start Mon Mar 30 2020 02:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 119.99711 * 2 1 4 4 H 1.08000 * 119.99743 * 205.72851 * 3 2 1 5 5 C 1.38817 * 120.00178 * 25.72479 * 3 2 1 6 6 N 1.31611 * 119.99908 * 9.81659 * 5 3 2 7 7 Si 1.86797 * 119.99814 * 189.81654 * 5 3 2 8 8 H 1.48498 * 109.47213 * 90.00512 * 7 5 3 9 9 H 1.48499 * 109.46972 * 210.00147 * 7 5 3 10 10 H 1.48499 * 109.47580 * 330.00231 * 7 5 3 11 11 C 1.46499 * 120.00023 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47172 * 93.32412 * 11 2 1 13 13 H 1.09007 * 109.45331 * 55.86643 * 12 11 2 14 14 C 1.53034 * 109.46413 * 295.89232 * 12 11 2 15 15 C 1.53121 * 109.27969 * 180.80418 * 14 12 11 16 16 C 1.53112 * 109.16118 * 57.65312 * 15 14 12 17 17 C 1.53045 * 109.28101 * 302.34847 * 16 15 14 18 18 N 1.46846 * 109.52116 * 59.17647 * 17 16 15 19 19 C 1.46902 * 110.99868 * 174.16443 * 18 17 16 20 20 H 1.09003 * 109.47127 * 267.41903 * 1 2 3 21 21 H 1.09001 * 109.47166 * 27.42374 * 1 2 3 22 22 H 1.09002 * 109.47375 * 147.42227 * 1 2 3 23 23 H 0.97001 * 119.99940 * 179.97438 * 6 5 3 24 24 H 1.08999 * 109.47203 * 333.32837 * 11 2 1 25 25 H 1.08997 * 109.46924 * 213.32215 * 11 2 1 26 26 H 1.09002 * 109.50598 * 60.86447 * 14 12 11 27 27 H 1.08996 * 109.53514 * 300.76546 * 14 12 11 28 28 H 1.09004 * 109.52337 * 297.74960 * 15 14 12 29 29 H 1.09005 * 109.57322 * 177.59359 * 15 14 12 30 30 H 1.08993 * 109.50836 * 182.40307 * 16 15 14 31 31 H 1.09007 * 109.53654 * 62.30818 * 16 15 14 32 32 H 1.08999 * 109.45703 * 299.15888 * 17 16 15 33 33 H 1.08996 * 109.45306 * 179.18611 * 17 16 15 34 34 H 1.09001 * 109.47268 * 67.74864 * 19 18 17 35 35 H 1.09003 * 109.46787 * 307.75045 * 19 18 17 36 36 H 1.08999 * 109.46863 * 187.75091 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1493 1.2323 -0.4060 5 6 1.5587 2.3285 0.5218 6 7 0.4272 2.2386 1.1880 7 14 2.3695 3.9937 0.2784 8 1 1.8692 4.6091 -0.9770 9 1 2.0421 4.8762 1.4269 10 1 3.8417 3.8195 0.1919 11 6 2.1975 -1.2687 -0.0006 12 6 2.5250 -1.6679 -1.4408 13 1 3.0760 -0.8614 -1.9247 14 6 1.2254 -1.9283 -2.2058 15 6 1.5585 -2.3468 -3.6406 16 6 2.4523 -3.5895 -3.6069 17 6 3.7164 -3.2811 -2.8012 18 7 3.3444 -2.8865 -1.4365 19 6 4.5360 -2.7166 -0.5944 20 1 -0.3633 -0.0463 1.0266 21 1 -0.3633 0.9122 -0.4733 22 1 -0.3634 -0.8660 -0.5533 23 1 0.0145 3.0370 1.5529 24 1 1.5839 -2.0427 0.4604 25 1 3.1228 -1.1542 0.5640 26 1 0.6244 -1.0191 -2.2223 27 1 0.6667 -2.7249 -1.7147 28 1 2.0826 -1.5347 -4.1446 29 1 0.6377 -2.5748 -4.1776 30 1 2.7279 -3.8673 -4.6241 31 1 1.9138 -4.4132 -3.1380 32 1 4.2618 -2.4671 -3.2788 33 1 4.3482 -4.1685 -2.7632 34 1 5.1050 -1.8533 -0.9397 35 1 5.1568 -3.6103 -0.6588 36 1 4.2305 -2.5602 0.4401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:10 Heat of formation + Delta-G solvation = 19.249073 kcal Electronic energy + Delta-G solvation = -15116.501959 eV Core-core repulsion = 12829.023736 eV Total energy + Delta-G solvation = -2287.478223 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.87673 -35.33613 -33.24037 -31.83216 -29.80488 -26.67004 -26.08126 -25.33521 -22.48479 -21.95426 -20.07680 -19.18589 -16.53849 -15.53126 -15.13691 -14.49798 -14.16694 -13.93805 -13.70754 -13.05205 -12.74735 -12.67253 -12.43106 -11.94330 -11.37464 -11.29374 -11.17763 -10.86367 -10.73866 -10.53368 -10.46506 -10.20528 -10.02885 -9.86349 -9.75592 -9.54258 -8.47053 -7.89410 -6.62979 -5.69593 -3.16477 3.39280 3.45457 3.46806 4.27779 4.56162 5.11280 5.17669 5.26997 5.47223 5.51404 5.67704 5.74308 5.80783 5.85685 5.86242 6.04292 6.07580 6.20990 6.21812 6.27271 6.32695 6.53633 6.67100 6.70846 6.86439 6.90741 6.98329 7.42652 7.52103 7.60555 7.77108 7.84796 8.47907 9.29859 9.92928 10.43820 11.36605 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038937 B = 0.008685 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.930580 B = 3223.094955 C = 3386.838963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.252 4.252 4 H 0.063 0.937 5 C 0.003 3.997 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.157 3.843 12 C 0.065 3.935 13 H 0.038 0.962 14 C -0.103 4.103 15 C -0.122 4.122 16 C -0.114 4.114 17 C 0.057 3.943 18 N -0.540 5.540 19 C 0.025 3.975 20 H 0.018 0.982 21 H 0.051 0.949 22 H 0.000 1.000 23 H 0.252 0.748 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -9.792 -7.082 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.322 5.322 3 C -0.382 4.382 4 H 0.081 0.919 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.029 3.971 12 C -0.045 4.045 13 H 0.056 0.944 14 C -0.141 4.141 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.072 4.072 18 N -0.265 5.265 19 C -0.123 4.123 20 H 0.036 0.964 21 H 0.070 0.930 22 H 0.018 0.982 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.609 -10.016 -6.778 12.621 hybrid contribution 0.940 1.671 -0.488 1.979 sum 4.549 -8.345 -7.266 11.964 Atomic orbital electron populations 1.20841 0.82739 0.96840 0.97922 1.43808 1.01777 1.00510 1.86072 1.19139 0.99632 0.86322 1.33110 0.91904 1.25067 0.97891 0.98621 0.97981 1.70053 1.19334 1.27579 1.38306 0.86278 0.78898 0.84295 0.77203 1.21545 1.21693 1.20569 1.20792 0.96101 0.88411 0.91759 1.22460 0.93277 0.88352 1.00440 0.94420 1.21591 0.97358 1.01600 0.93575 1.21615 0.99029 0.97275 0.98063 1.21559 0.96377 0.98610 0.98614 1.22036 0.96593 0.99159 0.89361 1.61967 1.19006 1.35410 1.10140 1.22362 0.91736 0.99449 0.98774 0.96403 0.93048 0.98206 0.93779 0.93883 0.93637 0.90432 0.92173 0.92698 0.92464 0.92393 0.91435 0.95575 0.91596 0.95953 0.92423 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 8.10 59.85 0.49 4.52 16 2 N -0.60 -15.34 2.67 -181.12 -0.48 -15.82 16 3 C -0.25 -7.04 9.64 -15.06 -0.15 -7.19 16 4 H 0.06 1.74 7.85 -52.49 -0.41 1.33 16 5 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16 6 N -0.91 -26.87 10.75 55.49 0.60 -26.27 16 7 Si 0.90 22.17 29.56 -169.99 -5.03 17.15 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.16 3.40 4.86 -4.04 -0.02 3.38 16 12 C 0.07 1.23 2.11 -67.72 -0.14 1.09 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.10 -1.82 4.36 -26.65 -0.12 -1.94 16 15 C -0.12 -1.79 6.00 -26.61 -0.16 -1.95 16 16 C -0.11 -1.48 6.09 -26.65 -0.16 -1.64 16 17 C 0.06 0.80 5.46 -3.83 -0.02 0.78 16 18 N -0.54 -8.79 4.75 -234.92 -1.11 -9.90 16 19 C 0.03 0.37 8.95 60.07 0.54 0.91 16 20 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 21 H 0.05 1.39 6.92 -51.93 -0.36 1.03 16 22 H 0.00 -0.01 6.29 -51.93 -0.33 -0.34 16 23 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.04 0.91 8.05 -51.93 -0.42 0.49 16 25 H 0.05 0.99 6.09 -51.93 -0.32 0.68 16 26 H 0.08 1.53 6.19 -51.93 -0.32 1.20 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.72 8.03 -51.93 -0.42 0.30 16 36 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 LS Contribution 274.71 15.07 4.14 4.14 Total: -1.00 -29.41 274.71 -7.96 -37.36 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -6.23 Total: -4.60 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 0.17 Total: -2.06 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -1.00 Total: -51.99 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.41 -7.96 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.613 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds