Wall clock time and date at job start Mon Mar 30 2020 02:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 119.99711 * 2 1 4 4 H 1.08000 * 119.99743 * 205.72851 * 3 2 1 5 5 C 1.38817 * 120.00178 * 25.72479 * 3 2 1 6 6 N 1.31611 * 119.99908 * 9.81659 * 5 3 2 7 7 Si 1.86797 * 119.99814 * 189.81654 * 5 3 2 8 8 H 1.48498 * 109.47213 * 90.00512 * 7 5 3 9 9 H 1.48499 * 109.46972 * 210.00147 * 7 5 3 10 10 H 1.48499 * 109.47580 * 330.00231 * 7 5 3 11 11 C 1.46499 * 120.00023 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47172 * 93.32412 * 11 2 1 13 13 H 1.09007 * 109.45331 * 55.86643 * 12 11 2 14 14 C 1.53034 * 109.46413 * 295.89232 * 12 11 2 15 15 C 1.53121 * 109.27969 * 180.80418 * 14 12 11 16 16 C 1.53112 * 109.16118 * 57.65312 * 15 14 12 17 17 C 1.53045 * 109.28101 * 302.34847 * 16 15 14 18 18 N 1.46846 * 109.52116 * 59.17647 * 17 16 15 19 19 C 1.46902 * 110.99868 * 174.16443 * 18 17 16 20 20 H 1.09003 * 109.47127 * 267.41903 * 1 2 3 21 21 H 1.09001 * 109.47166 * 27.42374 * 1 2 3 22 22 H 1.09002 * 109.47375 * 147.42227 * 1 2 3 23 23 H 0.97001 * 119.99940 * 179.97438 * 6 5 3 24 24 H 1.08999 * 109.47203 * 333.32837 * 11 2 1 25 25 H 1.08997 * 109.46924 * 213.32215 * 11 2 1 26 26 H 1.09002 * 109.50598 * 60.86447 * 14 12 11 27 27 H 1.08996 * 109.53514 * 300.76546 * 14 12 11 28 28 H 1.09004 * 109.52337 * 297.74960 * 15 14 12 29 29 H 1.09005 * 109.57322 * 177.59359 * 15 14 12 30 30 H 1.08993 * 109.50836 * 182.40307 * 16 15 14 31 31 H 1.09007 * 109.53654 * 62.30818 * 16 15 14 32 32 H 1.08999 * 109.45703 * 299.15888 * 17 16 15 33 33 H 1.08996 * 109.45306 * 179.18611 * 17 16 15 34 34 H 1.09001 * 109.47268 * 67.74864 * 19 18 17 35 35 H 1.09003 * 109.46787 * 307.75045 * 19 18 17 36 36 H 1.08999 * 109.46863 * 187.75091 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1493 1.2323 -0.4060 5 6 1.5587 2.3285 0.5218 6 7 0.4272 2.2386 1.1880 7 14 2.3695 3.9937 0.2784 8 1 1.8692 4.6091 -0.9770 9 1 2.0421 4.8762 1.4269 10 1 3.8417 3.8195 0.1919 11 6 2.1975 -1.2687 -0.0006 12 6 2.5250 -1.6679 -1.4408 13 1 3.0760 -0.8614 -1.9247 14 6 1.2254 -1.9283 -2.2058 15 6 1.5585 -2.3468 -3.6406 16 6 2.4523 -3.5895 -3.6069 17 6 3.7164 -3.2811 -2.8012 18 7 3.3444 -2.8865 -1.4365 19 6 4.5360 -2.7166 -0.5944 20 1 -0.3633 -0.0463 1.0266 21 1 -0.3633 0.9122 -0.4733 22 1 -0.3634 -0.8660 -0.5533 23 1 0.0145 3.0370 1.5529 24 1 1.5839 -2.0427 0.4604 25 1 3.1228 -1.1542 0.5640 26 1 0.6244 -1.0191 -2.2223 27 1 0.6667 -2.7249 -1.7147 28 1 2.0826 -1.5347 -4.1446 29 1 0.6377 -2.5748 -4.1776 30 1 2.7279 -3.8673 -4.6241 31 1 1.9138 -4.4132 -3.1380 32 1 4.2618 -2.4671 -3.2788 33 1 4.3482 -4.1685 -2.7632 34 1 5.1050 -1.8533 -0.9397 35 1 5.1568 -3.6103 -0.6588 36 1 4.2305 -2.5602 0.4401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:10 Heat of formation + Delta-G solvation = 0.757700 kcal Electronic energy + Delta-G solvation = -15117.303805 eV Core-core repulsion = 12829.023736 eV Total energy + Delta-G solvation = -2288.280069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.24816 -37.23145 -34.47217 -33.71376 -31.48105 -28.30764 -27.76150 -27.06104 -23.87168 -23.56442 -21.69918 -20.53771 -18.62624 -17.16636 -16.64514 -16.06288 -15.68141 -15.47167 -15.12429 -14.61021 -14.49756 -14.25845 -13.90455 -13.26827 -13.09775 -12.82406 -12.78586 -12.52188 -12.49484 -12.26444 -12.10714 -11.93872 -11.70775 -11.56400 -11.22416 -11.01696 -10.59681 -9.22423 -8.72004 -7.85495 -5.35244 1.43708 1.44608 1.53660 2.47644 3.00363 3.29256 3.82612 3.97069 4.01052 4.04395 4.24522 4.43918 4.54410 4.58534 4.63892 4.70730 4.76849 4.90736 4.92580 5.01520 5.06855 5.09981 5.14150 5.17027 5.26180 5.36230 5.43965 5.53033 5.59136 5.68962 6.16990 6.28540 6.36400 7.15049 7.86386 8.32011 9.19090 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038937 B = 0.008685 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.930580 B = 3223.094955 C = 3386.838963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.614 5.614 3 C -0.261 4.261 4 H 0.061 0.939 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.285 1.285 9 H -0.292 1.292 10 H -0.270 1.270 11 C 0.159 3.841 12 C 0.080 3.920 13 H 0.009 0.991 14 C -0.101 4.101 15 C -0.119 4.119 16 C -0.108 4.108 17 C 0.053 3.947 18 N -0.542 5.542 19 C 0.024 3.976 20 H -0.007 1.007 21 H 0.025 0.975 22 H 0.031 0.969 23 H 0.249 0.751 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.019 0.981 33 H 0.092 0.908 34 H 0.012 0.988 35 H 0.088 0.912 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 -11.098 -8.380 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.337 5.337 3 C -0.391 4.391 4 H 0.079 0.921 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.212 1.212 9 H -0.218 1.218 10 H -0.195 1.195 11 C 0.032 3.968 12 C -0.031 4.031 13 H 0.027 0.973 14 C -0.139 4.139 15 C -0.157 4.157 16 C -0.146 4.146 17 C -0.075 4.075 18 N -0.268 5.268 19 C -0.124 4.124 20 H 0.011 0.989 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.110 0.890 34 H 0.031 0.969 35 H 0.106 0.894 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.633 -11.357 -8.093 14.695 hybrid contribution 0.661 1.995 -0.082 2.104 sum 5.294 -9.362 -8.175 13.510 Atomic orbital electron populations 1.20577 0.82758 0.96820 0.96481 1.44007 1.02066 1.01366 1.86299 1.19385 0.99669 0.87498 1.32549 0.92146 1.25831 0.98644 1.02026 0.98098 1.70213 1.20652 1.28182 1.39404 0.85256 0.78387 0.79867 0.76868 1.21189 1.21803 1.19528 1.20877 0.95341 0.86842 0.93733 1.22076 0.94241 0.88832 0.97931 0.97312 1.21512 0.96173 1.00470 0.95736 1.21592 1.00322 0.97979 0.95770 1.21559 0.95384 0.97553 1.00110 1.22196 0.97585 0.99871 0.87823 1.61986 1.19536 1.33264 1.11982 1.22407 0.91503 1.00547 0.97901 0.98883 0.95656 0.95104 0.94155 0.93465 0.94304 0.93091 0.91851 0.93477 0.90676 0.89614 0.90977 0.96222 0.88996 0.96903 0.89383 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.14 8.10 127.77 1.04 10.18 16 2 N -0.61 -31.99 2.67 -726.93 -1.94 -33.93 16 3 C -0.26 -14.78 9.64 84.04 0.81 -13.97 16 4 H 0.06 3.39 7.85 -2.91 -0.02 3.37 16 5 C -0.05 -2.92 5.11 84.86 0.43 -2.49 16 6 N -0.94 -56.71 10.75 21.65 0.23 -56.48 16 7 Si 0.97 46.02 29.56 68.60 2.03 48.05 16 8 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 9 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 C 0.16 6.88 4.86 86.38 0.42 7.30 16 12 C 0.08 2.98 2.11 44.94 0.09 3.08 16 13 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 14 C -0.10 -3.46 4.36 30.65 0.13 -3.32 16 15 C -0.12 -3.22 6.00 30.67 0.18 -3.04 16 16 C -0.11 -2.43 6.09 30.65 0.19 -2.25 16 17 C 0.05 1.32 5.46 86.33 0.47 1.79 16 18 N -0.54 -16.62 4.75 -897.16 -4.26 -20.88 16 19 C 0.02 0.69 8.95 127.69 1.14 1.83 16 20 H -0.01 -0.40 7.73 -2.39 -0.02 -0.42 16 21 H 0.02 1.39 6.92 -2.39 -0.02 1.37 16 22 H 0.03 1.36 6.29 -2.39 -0.02 1.34 16 23 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 24 H 0.05 1.99 8.05 -2.39 -0.02 1.97 16 25 H 0.04 1.72 6.09 -2.39 -0.01 1.70 16 26 H 0.05 2.00 6.19 -2.39 -0.01 1.98 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 1.86 8.04 -2.39 -0.02 1.84 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.09 1.94 8.03 -2.39 -0.02 1.92 16 36 H 0.06 1.93 6.34 -2.39 -0.02 1.92 16 Total: -1.00 -63.22 274.71 2.00 -61.22 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.02 Total: 2.91 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 4.91 Total: -0.89 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -5.96 Total: -111.29 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -63.22 2.00 -61.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.980 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds