Wall clock time and date at job start Mon Mar 30 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.39777 * 110.99786 * 2 1 4 4 C 1.54437 * 111.75796 * 189.13626 * 3 2 1 5 5 C 1.50756 * 109.03972 * 282.61822 * 4 3 2 6 6 C 1.54178 * 112.61699 * 93.00582 * 5 4 3 7 7 C 1.53821 * 111.96668 * 318.48541 * 6 5 4 8 8 H 1.09000 * 108.99302 * 79.55719 * 7 6 5 9 9 N 1.46893 * 109.04932 * 198.49251 * 7 6 5 10 10 C 1.46902 * 110.99922 * 207.11354 * 9 7 6 11 11 C 1.50701 * 109.46813 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00507 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99908 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99631 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00276 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47317 * 59.99781 * 15 13 11 17 17 H 1.48495 * 109.47478 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47085 * 300.00044 * 15 13 11 19 19 C 1.47633 * 111.00023 * 128.90345 * 2 1 3 20 20 H 1.08999 * 109.46981 * 56.05052 * 1 2 3 21 21 H 1.09002 * 109.46974 * 176.04888 * 1 2 3 22 22 H 1.08993 * 109.47353 * 296.04749 * 1 2 3 23 23 H 1.08997 * 109.02700 * 68.54596 * 3 2 1 24 24 H 1.09007 * 109.02351 * 309.71874 * 3 2 1 25 25 H 1.09001 * 109.54345 * 42.48272 * 4 3 2 26 26 H 1.09004 * 109.54718 * 162.75261 * 4 3 2 27 27 H 1.09001 * 108.85469 * 213.81475 * 5 4 3 28 28 H 1.08999 * 108.85411 * 332.19745 * 5 4 3 29 29 H 1.08998 * 108.98134 * 197.84846 * 6 5 4 30 30 H 1.08996 * 108.91181 * 79.07685 * 6 5 4 31 31 H 1.00906 * 110.99949 * 83.15814 * 9 7 6 32 32 H 1.08994 * 109.47205 * 299.99874 * 10 9 7 33 33 H 1.08992 * 109.46987 * 60.00249 * 10 9 7 34 34 H 0.96999 * 119.99535 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.74625 * 269.94697 * 19 2 1 36 36 H 1.08993 * 109.74535 * 30.62358 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9699 1.3050 0.0000 4 6 3.4971 1.3320 -0.2277 5 6 4.1924 0.9507 1.0544 6 6 4.4983 -0.5582 1.1370 7 6 3.3284 -1.4117 0.6184 8 1 3.3544 -1.4246 -0.4713 9 7 3.4787 -2.7850 1.1176 10 6 2.8403 -3.7478 0.2101 11 6 3.0153 -5.1425 0.7536 12 1 3.5471 -5.2981 1.6807 13 6 2.4955 -6.2199 0.0679 14 7 1.8474 -6.0303 -1.0608 15 14 2.7117 -7.9485 0.7419 16 1 2.0814 -8.0392 2.0834 17 1 2.0665 -8.9218 -0.1755 18 1 4.1597 -8.2589 0.8533 19 6 1.9981 -0.8656 1.0726 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3633 -1.0252 -0.0708 22 1 -0.3634 0.4512 0.9232 23 1 1.7453 1.7717 0.9590 24 1 1.4824 1.8726 -0.7927 25 1 3.7616 0.6216 -1.0111 26 1 3.8039 2.3350 -0.5245 27 1 5.1286 1.5043 1.1256 28 1 3.5569 1.2278 1.8956 29 1 4.6975 -0.8233 2.1753 30 1 5.3850 -0.7720 0.5403 31 1 3.1114 -2.8718 2.0534 32 1 1.7776 -3.5202 0.1279 33 1 3.3033 -3.6812 -0.7744 34 1 1.4815 -6.7883 -1.5430 35 1 2.1309 -0.2829 1.9842 36 1 1.3059 -1.6868 1.2581 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260265939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:36 Heat of formation + Delta-G solvation = -22.313773 kcal Electronic energy + Delta-G solvation = -14762.390542 eV Core-core repulsion = 12473.110019 eV Total energy + Delta-G solvation = -2289.280523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58950 -37.08801 -35.26808 -34.41049 -31.47265 -28.79274 -27.90303 -26.08416 -24.66184 -23.29714 -21.81642 -20.34071 -18.50161 -16.99474 -16.93364 -16.62240 -16.01017 -15.68847 -15.20211 -14.81569 -14.44357 -14.20539 -13.76289 -13.59675 -13.18311 -13.01634 -12.95154 -12.66710 -12.47186 -12.34482 -12.07859 -11.88724 -11.56823 -11.40703 -11.21547 -10.99943 -10.65144 -9.30339 -8.94471 -8.20657 -6.32752 1.40940 1.45060 1.53027 2.40624 2.96557 3.11813 3.58284 3.88234 3.98585 4.09027 4.12472 4.29396 4.43556 4.50695 4.52924 4.61474 4.71306 4.78287 4.86204 4.94639 5.02119 5.11798 5.17593 5.25528 5.27419 5.35970 5.44732 5.56830 5.63690 6.02353 6.12356 6.46229 6.56851 6.76650 6.92795 7.38282 8.90495 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044238 B = 0.007148 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.793740 B = 3916.170128 C = 4309.724346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.576 5.576 3 C 0.074 3.926 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.098 4.098 7 C 0.091 3.909 8 H 0.052 0.948 9 N -0.686 5.686 10 C 0.218 3.782 11 C -0.539 4.539 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.974 3.026 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.268 1.268 19 C 0.054 3.946 20 H 0.082 0.918 21 H 0.048 0.952 22 H 0.034 0.966 23 H 0.024 0.976 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.333 0.667 32 H -0.039 1.039 33 H -0.009 1.009 34 H 0.265 0.735 35 H 0.054 0.946 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 15.058 4.327 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.301 5.301 3 C -0.055 4.055 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.136 4.136 7 C -0.020 4.020 8 H 0.070 0.930 9 N -0.315 5.315 10 C 0.091 3.909 11 C -0.578 4.578 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.798 3.202 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.075 4.075 20 H 0.100 0.900 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.150 0.850 32 H -0.022 1.022 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.002 14.704 3.507 15.149 hybrid contribution -1.345 -0.682 0.747 1.683 sum -0.343 14.022 4.254 14.657 Atomic orbital electron populations 1.22328 0.86189 1.01636 1.01226 1.58719 1.08275 1.14643 1.48421 1.21056 0.96284 0.87980 1.00196 1.21526 0.93864 1.02223 0.98026 1.21383 1.01264 0.94471 0.97872 1.21821 0.96612 0.94045 1.01132 1.21431 0.93444 0.88145 0.98948 0.92995 1.60683 1.61934 1.03457 1.05471 1.19088 0.90023 0.90458 0.91365 1.21569 1.35252 0.92276 1.08661 0.91722 1.25984 0.94548 1.04117 0.95105 1.70110 1.37740 1.32650 1.16852 0.85373 0.78685 0.77848 0.78295 1.18990 1.20756 1.19334 1.22465 0.96667 0.95839 0.92496 0.89978 0.93350 0.94734 0.95784 0.90207 0.92753 0.89080 0.90304 0.92192 0.91797 0.92836 0.84997 1.02168 0.99133 0.92662 0.92743 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.44 127.69 1.21 2.11 16 2 N -0.58 -17.52 4.19 -939.57 -3.94 -21.46 16 3 C 0.07 1.76 4.93 88.07 0.43 2.19 16 4 C -0.12 -2.69 5.65 30.35 0.17 -2.52 16 5 C -0.11 -2.53 5.31 30.26 0.16 -2.37 16 6 C -0.10 -2.91 5.52 31.27 0.17 -2.74 16 7 C 0.09 3.40 2.06 44.48 0.09 3.49 16 8 H 0.05 2.26 6.87 -2.39 -0.02 2.24 16 9 N -0.69 -30.82 6.12 -497.86 -3.05 -33.87 16 10 C 0.22 12.24 5.15 85.56 0.44 12.68 16 11 C -0.54 -31.73 9.32 25.60 0.24 -31.49 16 12 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 13 C 0.00 0.04 5.46 84.66 0.46 0.50 16 14 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 15 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 19 C 0.05 1.80 4.69 85.45 0.40 2.21 16 20 H 0.08 1.87 7.96 -2.39 -0.02 1.85 16 21 H 0.05 1.49 7.94 -2.39 -0.02 1.47 16 22 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.02 0.54 7.55 -2.39 -0.02 0.52 16 24 H 0.08 1.67 7.88 -2.38 -0.02 1.65 16 25 H 0.05 1.51 7.11 -2.39 -0.02 1.49 16 26 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.29 6.58 -2.39 -0.02 1.27 16 29 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.33 14.08 8.42 -89.69 -0.75 13.33 16 32 H -0.04 -2.37 7.47 -2.39 -0.02 -2.39 16 33 H -0.01 -0.59 8.04 -2.39 -0.02 -0.61 16 34 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.05 1.60 6.66 -2.38 -0.02 1.59 16 36 H 0.05 1.87 6.76 -2.39 -0.02 1.86 16 Total: -1.00 -65.67 278.04 -0.61 -66.28 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.28 Total: 15.49 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 3.78 Total: -15.93 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -6.70 Total: -112.99 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.67 -0.61 -66.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260265939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.970 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds