Wall clock time and date at job start Mon Mar 30 2020 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86804 * 119.99923 * 2 1 4 4 H 1.48504 * 109.47048 * 270.00094 * 3 2 1 5 5 H 1.48504 * 109.46737 * 29.99764 * 3 2 1 6 6 H 1.48497 * 109.47410 * 149.99837 * 3 2 1 7 7 C 1.40146 * 120.00457 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00402 * 179.97438 * 7 2 1 9 9 C 1.39776 * 119.99745 * 0.02562 * 7 2 1 10 10 S 1.76993 * 127.91805 * 0.07445 * 9 7 2 11 11 N 1.56168 * 96.83885 * 180.26968 * 10 9 7 12 12 C 1.30752 * 110.91490 * 359.80158 * 11 10 9 13 13 C 1.47455 * 121.28408 * 180.02562 * 12 11 10 14 14 N 1.34777 * 119.99914 * 359.97341 * 13 12 11 15 15 O 1.21596 * 120.00100 * 179.97438 * 13 12 11 16 16 C 1.39245 * 117.42934 * 359.97438 * 12 11 10 17 17 N 1.38605 * 124.67060 * 180.02562 * 16 12 11 18 18 H 0.96994 * 120.00414 * 0.02562 * 1 2 3 19 19 H 0.97003 * 119.99989 * 0.02562 * 14 13 12 20 20 H 0.96998 * 120.00383 * 180.02562 * 14 13 12 21 21 H 0.97001 * 120.00540 * 0.03027 * 17 16 12 22 22 H 0.97005 * 119.99736 * 179.74918 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5400 1.4403 0.7000 7 6 2.0093 -1.2136 0.0005 8 1 3.0893 -1.2136 0.0001 9 6 1.3104 -2.4242 0.0005 10 16 -0.4426 -2.6680 -0.0019 11 7 -0.4131 -4.2294 0.0068 12 6 0.8168 -4.6731 0.0077 13 6 1.1095 -6.1183 0.0148 14 7 0.0993 -7.0104 0.0212 15 8 2.2623 -6.5051 0.0151 16 6 1.8395 -3.7281 0.0005 17 7 3.1922 -4.0303 -0.0001 18 1 -0.4850 0.8400 -0.0004 19 1 -0.8203 -6.7018 0.0206 20 1 0.2918 -7.9611 0.0262 21 1 3.4825 -4.9559 0.0042 22 1 3.8487 -3.3162 -0.0090 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260635529.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:28 Heat of formation + Delta-G solvation = -24.659198 kcal Electronic energy + Delta-G solvation = -11837.783226 eV Core-core repulsion = 9518.228674 eV Total energy + Delta-G solvation = -2319.554552 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.01831 -36.55534 -34.22937 -33.26746 -31.96847 -28.96596 -25.55236 -24.37642 -20.45148 -18.83762 -17.64889 -16.75550 -16.47126 -15.42831 -15.27388 -14.25717 -14.17304 -13.34990 -13.08930 -12.67865 -12.47135 -11.45561 -11.42542 -11.10839 -10.46657 -9.87204 -9.79976 -9.54661 -9.06552 -8.98469 -8.67174 -7.60015 -7.04258 -6.40388 -4.27533 2.23465 2.85081 2.95051 2.99592 3.39141 3.44433 3.71204 3.94207 4.42538 4.46653 4.98364 5.63142 6.11982 6.77585 6.86894 7.06474 7.35555 7.79021 7.90237 8.21004 8.28548 8.45028 8.97337 9.14791 9.39526 9.88285 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.056008 B = 0.010322 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.809987 B = 2712.092134 C = 3202.044441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.050 3.950 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.358 4.358 8 H 0.090 0.910 9 C -0.080 4.080 10 S 0.402 5.598 11 N -0.665 5.665 12 C 0.007 3.993 13 C 0.601 3.399 14 N -0.849 5.849 15 O -0.569 6.569 16 C 0.019 3.981 17 N -0.863 5.863 18 H 0.296 0.704 19 H 0.408 0.592 20 H 0.390 0.610 21 H 0.396 0.604 22 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 -0.621 -0.010 0.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.170 4.170 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.400 4.400 8 H 0.108 0.892 9 C -0.214 4.214 10 S 0.557 5.443 11 N -0.504 5.504 12 C -0.158 4.158 13 C 0.386 3.614 14 N -0.411 5.411 15 O -0.448 6.448 16 C -0.096 4.096 17 N -0.414 5.414 18 H 0.108 0.892 19 H 0.237 0.763 20 H 0.219 0.781 21 H 0.229 0.771 22 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.073 -0.439 -0.004 2.119 hybrid contribution 2.109 -0.120 -0.005 2.112 sum 0.036 -0.559 -0.009 0.561 Atomic orbital electron populations 1.69018 1.07508 1.30737 1.34687 1.26056 0.95177 1.02131 0.93683 0.85836 0.79981 0.78974 0.79414 1.19201 1.19845 1.18421 1.18674 0.94850 0.88210 1.38270 0.89223 1.23182 0.99073 0.94168 1.04967 1.81685 1.04200 0.93641 1.64729 1.71798 1.23689 1.16929 1.38015 1.19225 0.88918 0.92549 1.15068 1.17901 0.84102 0.85691 0.73711 1.43622 1.10415 1.08712 1.78326 1.90523 1.20888 1.80480 1.52925 1.17493 0.86114 0.90636 1.15380 1.41230 1.01700 1.09337 1.89165 0.89184 0.76296 0.78066 0.77108 0.79267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.23 10.96 55.56 0.61 -17.63 14 2 C 0.05 1.13 5.50 -17.26 -0.09 1.03 14 3 Si 0.93 17.06 29.56 -169.99 -5.03 12.03 14 4 H -0.27 -4.85 7.11 56.52 0.40 -4.45 14 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 14 6 H -0.26 -4.73 7.11 56.52 0.40 -4.32 14 7 C -0.36 -8.77 9.20 -38.29 -0.35 -9.12 14 8 H 0.09 2.07 7.31 -52.49 -0.38 1.68 14 9 C -0.08 -2.08 6.42 -38.07 -0.24 -2.32 14 10 S 0.40 9.88 20.75 -107.50 -2.23 7.65 14 11 N -0.67 -16.30 10.56 26.70 0.28 -16.02 14 12 C 0.01 0.17 6.62 -84.20 -0.56 -0.39 14 13 C 0.60 13.48 8.07 -12.51 -0.10 13.38 14 14 N -0.85 -14.70 8.87 30.44 0.27 -14.43 14 15 O -0.57 -13.44 15.02 5.28 0.08 -13.36 14 16 C 0.02 0.48 7.03 -83.49 -0.59 -0.11 14 17 N -0.86 -19.63 8.99 32.63 0.29 -19.33 14 18 H 0.30 6.14 8.30 -40.82 -0.34 5.80 14 19 H 0.41 6.71 8.24 -40.82 -0.34 6.38 14 20 H 0.39 5.52 8.93 -40.82 -0.36 5.15 14 21 H 0.40 8.89 6.08 -40.82 -0.25 8.65 14 22 H 0.38 7.88 8.21 -40.82 -0.34 7.54 14 LS Contribution 215.94 15.07 3.25 3.25 Total: -1.00 -28.20 215.94 -5.21 -33.41 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.80 Total: 21.95 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.94 Total: 2.47 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: 1.45 Total: -67.41 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 9.88 SS G_CDS: -2.23 Total: 7.65 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -28.20 -5.21 -33.41 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635529.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.746 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds