Wall clock time and date at job start Mon Mar 30 2020 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86804 * 119.99923 * 2 1 4 4 H 1.48504 * 109.47048 * 270.00094 * 3 2 1 5 5 H 1.48504 * 109.46737 * 29.99764 * 3 2 1 6 6 H 1.48497 * 109.47410 * 149.99837 * 3 2 1 7 7 C 1.40146 * 120.00457 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00402 * 179.97438 * 7 2 1 9 9 C 1.39776 * 119.99745 * 0.02562 * 7 2 1 10 10 S 1.76993 * 127.91805 * 0.07445 * 9 7 2 11 11 N 1.56168 * 96.83885 * 180.26968 * 10 9 7 12 12 C 1.30752 * 110.91490 * 359.80158 * 11 10 9 13 13 C 1.47455 * 121.28408 * 180.02562 * 12 11 10 14 14 N 1.34777 * 119.99914 * 359.97341 * 13 12 11 15 15 O 1.21596 * 120.00100 * 179.97438 * 13 12 11 16 16 C 1.39245 * 117.42934 * 359.97438 * 12 11 10 17 17 N 1.38605 * 124.67060 * 180.02562 * 16 12 11 18 18 H 0.96994 * 120.00414 * 0.02562 * 1 2 3 19 19 H 0.97003 * 119.99989 * 0.02562 * 14 13 12 20 20 H 0.96998 * 120.00383 * 180.02562 * 14 13 12 21 21 H 0.97001 * 120.00540 * 0.03027 * 17 16 12 22 22 H 0.97005 * 119.99736 * 179.74918 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5400 1.4403 0.7000 7 6 2.0093 -1.2136 0.0005 8 1 3.0893 -1.2136 0.0001 9 6 1.3104 -2.4242 0.0005 10 16 -0.4426 -2.6680 -0.0019 11 7 -0.4131 -4.2294 0.0068 12 6 0.8168 -4.6731 0.0077 13 6 1.1095 -6.1183 0.0148 14 7 0.0993 -7.0104 0.0212 15 8 2.2623 -6.5051 0.0151 16 6 1.8395 -3.7281 0.0005 17 7 3.1922 -4.0303 -0.0001 18 1 -0.4850 0.8400 -0.0004 19 1 -0.8203 -6.7018 0.0206 20 1 0.2918 -7.9611 0.0262 21 1 3.4825 -4.9559 0.0042 22 1 3.8487 -3.3162 -0.0090 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260635529.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:28 Heat of formation + Delta-G solvation = -47.577859 kcal Electronic energy + Delta-G solvation = -11838.777054 eV Core-core repulsion = 9518.228674 eV Total energy + Delta-G solvation = -2320.548380 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.78125 -38.36578 -36.03570 -34.96065 -33.69214 -30.82112 -27.39525 -26.17702 -22.21515 -20.59986 -19.51534 -18.56164 -18.07484 -17.17585 -16.98676 -15.95276 -15.91870 -15.12104 -14.87222 -14.33050 -14.30411 -13.12906 -12.97438 -12.94434 -11.95118 -11.63311 -11.62714 -11.29058 -10.88382 -10.62655 -10.51108 -9.47849 -8.79121 -8.27577 -6.13696 0.39281 1.26485 1.45890 1.55684 1.61323 1.74066 2.04999 2.23728 2.61846 2.89200 3.13815 3.85056 4.41233 4.92084 5.08727 5.22934 5.87160 5.98364 6.18329 6.35973 6.58271 6.62982 7.23786 7.43678 7.65314 8.16238 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.056008 B = 0.010322 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.809987 B = 2712.092134 C = 3202.044441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.015 3.985 3 Si 1.008 2.992 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.378 4.378 8 H 0.098 0.902 9 C -0.104 4.104 10 S 0.388 5.612 11 N -0.670 5.670 12 C -0.009 4.009 13 C 0.595 3.405 14 N -0.821 5.821 15 O -0.585 6.585 16 C -0.011 4.011 17 N -0.856 5.856 18 H 0.308 0.692 19 H 0.414 0.586 20 H 0.409 0.591 21 H 0.397 0.603 22 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 0.288 0.004 0.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.204 4.204 3 Si 0.828 3.172 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.419 4.419 8 H 0.116 0.884 9 C -0.237 4.237 10 S 0.543 5.457 11 N -0.509 5.509 12 C -0.173 4.173 13 C 0.378 3.622 14 N -0.384 5.384 15 O -0.467 6.467 16 C -0.126 4.126 17 N -0.409 5.409 18 H 0.121 0.879 19 H 0.245 0.755 20 H 0.242 0.758 21 H 0.230 0.770 22 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.838 0.415 0.010 1.884 hybrid contribution 1.972 -0.363 -0.010 2.005 sum 0.133 0.052 -0.001 0.143 Atomic orbital electron populations 1.69039 1.08805 1.32499 1.33097 1.27007 0.95959 1.05069 0.92371 0.84748 0.78620 0.74277 0.79579 1.18656 1.18772 1.18092 1.19075 0.95554 0.88760 1.38540 0.88401 1.23566 0.99717 0.95017 1.05396 1.81514 1.04119 0.94169 1.65899 1.71799 1.23565 1.16672 1.38820 1.19645 0.88948 0.94097 1.14659 1.17737 0.84689 0.85438 0.74303 1.43331 1.09714 1.09183 1.76218 1.90506 1.21625 1.80518 1.54025 1.17798 0.87228 0.90903 1.16705 1.41131 1.01040 1.09633 1.89132 0.87904 0.75500 0.75827 0.77006 0.78386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.31 10.96 21.87 0.24 -36.07 14 2 C 0.01 0.64 5.50 85.30 0.47 1.11 14 3 Si 1.01 33.15 29.56 68.60 2.03 35.18 14 4 H -0.26 -8.41 7.11 99.48 0.71 -7.70 14 5 H -0.26 -8.21 7.11 99.48 0.71 -7.50 14 6 H -0.26 -8.31 7.11 99.48 0.71 -7.60 14 7 C -0.38 -18.27 9.20 23.11 0.21 -18.05 14 8 H 0.10 4.44 7.31 -2.91 -0.02 4.41 14 9 C -0.10 -5.40 6.42 23.25 0.15 -5.25 14 10 S 0.39 19.17 20.75 -56.49 -1.17 18.00 14 11 N -0.67 -32.84 10.56 -69.45 -0.73 -33.57 14 12 C -0.01 -0.46 6.62 41.98 0.28 -0.18 14 13 C 0.59 26.25 8.07 86.67 0.70 26.95 14 14 N -0.82 -27.16 8.87 -175.87 -1.56 -28.72 14 15 O -0.59 -27.29 15.02 -4.02 -0.06 -27.35 14 16 C -0.01 -0.58 7.03 38.92 0.27 -0.30 14 17 N -0.86 -38.98 8.99 -50.69 -0.46 -39.44 14 18 H 0.31 12.30 8.30 -92.71 -0.77 11.53 14 19 H 0.41 12.99 8.24 -92.71 -0.76 12.22 14 20 H 0.41 10.69 8.93 -92.71 -0.83 9.86 14 21 H 0.40 17.80 6.08 -92.71 -0.56 17.24 14 22 H 0.39 16.01 8.21 -92.70 -0.76 15.25 14 Total: -1.00 -58.76 215.94 -1.22 -59.98 By element: Atomic # 1 Polarization: 49.30 SS G_CDS: -1.59 Total: 47.71 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 2.08 Total: 4.28 kcal Atomic # 7 Polarization: -135.29 SS G_CDS: -2.51 Total: -137.80 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 33.15 SS G_CDS: 2.03 Total: 35.18 kcal Atomic # 16 Polarization: 19.17 SS G_CDS: -1.17 Total: 18.00 kcal Total: -58.76 -1.22 -59.98 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635529.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.402 kcal (2) G-P(sol) polarization free energy of solvation -58.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds