Wall clock time and date at job start Mon Mar 30 2020 02:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47262 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47177 * 300.00305 * 3 2 1 6 6 H 1.48497 * 109.46867 * 60.00155 * 3 2 1 7 7 C 1.40062 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00708 * 180.02562 * 7 2 1 9 9 C 1.40837 * 119.99588 * 0.02562 * 7 2 1 10 10 N 1.34367 * 120.67317 * 0.02562 * 9 7 2 11 11 C 1.31944 * 120.74500 * 179.97438 * 10 9 7 12 12 S 1.76204 * 118.89021 * 180.02562 * 11 10 9 13 13 N 1.32955 * 122.21924 * 359.71756 * 11 10 9 14 14 C 1.32417 * 121.27865 * 0.57921 * 13 11 10 15 15 O 1.35565 * 120.45777 * 179.71242 * 14 13 11 16 16 C 1.40521 * 119.08461 * 359.43736 * 14 13 11 17 17 N 1.38619 * 120.99317 * 180.29532 * 16 14 13 18 18 H 0.97000 * 120.00133 * 359.97438 * 1 2 3 19 19 H 1.40994 * 100.00161 * 89.99443 * 12 11 10 20 20 H 0.96700 * 114.00112 * 269.72495 * 15 14 13 21 21 H 0.96995 * 119.99877 * 0.02562 * 17 16 14 22 22 H 0.97001 * 119.99905 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3965 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0078 -1.2129 -0.0005 8 1 3.0877 -1.2130 -0.0001 9 6 1.3036 -2.4326 -0.0016 10 7 -0.0400 -2.4484 -0.0027 11 6 -0.7012 -3.5902 -0.0042 12 16 -2.4628 -3.5539 -0.0062 13 7 -0.0830 -4.7673 -0.0103 14 6 1.2386 -4.8498 -0.0038 15 8 1.8517 -6.0589 -0.0043 16 6 1.9969 -3.6667 -0.0022 17 7 3.3825 -3.7070 -0.0015 18 1 -0.4850 0.8400 0.0004 19 1 -2.7060 -3.5477 -1.3950 20 1 2.0288 -6.4105 0.8789 21 1 3.8428 -4.5607 -0.0026 22 1 3.8917 -2.8814 0.0000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260707044.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:27 Heat of formation + Delta-G solvation = 5.950090 kcal Electronic energy + Delta-G solvation = -11967.979022 eV Core-core repulsion = 9649.751788 eV Total energy + Delta-G solvation = -2318.227234 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.24886 -36.37994 -34.44696 -33.45595 -30.98318 -28.30525 -26.22758 -22.34217 -22.01916 -18.80124 -17.53510 -16.55441 -16.42851 -15.69326 -15.02506 -14.73896 -14.28649 -13.15785 -13.06696 -12.66337 -11.57343 -11.44105 -11.11719 -10.92902 -10.77599 -10.37272 -9.99136 -9.77927 -9.14796 -8.63788 -7.65306 -7.24704 -6.90268 -6.58484 -4.67819 2.13048 2.58550 2.64378 2.99314 3.01688 3.02904 3.44035 3.79677 4.53134 4.80025 4.86441 5.56726 6.09111 6.30145 6.46576 6.86092 7.13760 7.75214 7.96009 8.24114 8.48300 8.61985 8.69613 8.83035 9.81787 10.11392 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.028477 B = 0.013382 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.003596 B = 2091.788816 C = 3056.112981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.698 5.698 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.416 4.416 8 H 0.087 0.913 9 C 0.238 3.762 10 N -0.458 5.458 11 C 0.274 3.726 12 S -0.083 6.083 13 N -0.564 5.564 14 C 0.230 3.770 15 O -0.484 6.484 16 C 0.043 3.957 17 N -0.859 5.859 18 H 0.279 0.721 19 H 0.083 0.917 20 H 0.373 0.627 21 H 0.386 0.614 22 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -0.825 1.031 3.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.452 4.452 8 H 0.105 0.895 9 C 0.101 3.899 10 N -0.183 5.183 11 C -0.107 4.107 12 S 0.070 5.930 13 N -0.297 5.297 14 C 0.045 3.955 15 O -0.288 6.288 16 C -0.070 4.070 17 N -0.403 5.403 18 H 0.090 0.910 19 H 0.047 0.953 20 H 0.226 0.774 21 H 0.213 0.787 22 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.258 -0.688 0.640 1.570 hybrid contribution 2.659 0.473 -0.456 2.739 sum 3.917 -0.215 0.185 3.927 Atomic orbital electron populations 1.70106 1.07096 1.28440 1.26375 1.26038 0.95025 1.01126 0.93913 0.86192 0.80562 0.80863 0.78804 1.18413 1.19695 1.19584 1.19235 0.94084 0.88975 1.42903 0.89491 1.18649 0.88002 0.90291 0.92990 1.69881 1.06535 1.24609 1.17231 1.22981 0.96884 0.86109 1.04742 1.86001 0.98106 1.97863 1.11010 1.67819 1.09280 1.29757 1.22863 1.18558 0.87065 0.82873 1.07046 1.84764 1.77961 1.33795 1.32266 1.19858 0.85581 0.95029 1.06548 1.41621 1.02950 1.09616 1.86068 0.90979 0.95261 0.77402 0.78655 0.77579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.73 11.51 55.55 0.64 -17.09 14 2 C 0.07 1.59 5.50 -17.33 -0.10 1.49 14 3 Si 0.91 17.28 29.56 -169.99 -5.02 12.25 14 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 14 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 14 7 C -0.42 -10.22 8.92 -37.92 -0.34 -10.56 14 8 H 0.09 1.91 6.22 -52.49 -0.33 1.58 14 9 C 0.24 6.25 6.59 -84.51 -0.56 5.69 14 10 N -0.46 -12.59 7.97 -11.34 -0.09 -12.68 14 11 C 0.27 7.14 7.90 -91.02 -0.72 6.42 14 12 S -0.08 -1.83 26.14 -107.50 -2.81 -4.64 14 13 N -0.56 -14.45 10.38 -13.31 -0.14 -14.58 14 14 C 0.23 5.47 7.87 -16.44 -0.13 5.34 14 15 O -0.48 -9.61 12.94 -18.39 -0.24 -9.84 14 16 C 0.04 1.01 6.87 -82.67 -0.57 0.44 14 17 N -0.86 -15.94 8.98 33.05 0.30 -15.65 14 18 H 0.28 6.37 8.29 -40.82 -0.34 6.04 14 19 H 0.08 1.69 9.55 96.90 0.93 2.62 14 20 H 0.37 5.54 9.06 45.56 0.41 5.95 14 21 H 0.39 6.13 8.30 -40.82 -0.34 5.79 14 22 H 0.39 6.84 6.96 -40.82 -0.28 6.55 14 LS Contribution 220.82 15.07 3.33 3.33 Total: -1.00 -30.15 220.82 -5.19 -35.34 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.26 Total: 14.73 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -2.41 Total: 8.82 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.71 Total: -60.00 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.24 Total: -9.84 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.02 Total: 12.25 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.81 Total: -4.64 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -30.15 -5.19 -35.34 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260707044.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.291 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds