Wall clock time and date at job start Mon Mar 30 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48500 * 109.47087 * 239.99532 * 3 2 1 5 5 H 1.48502 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47337 * 119.99733 * 3 2 1 7 7 C 1.40075 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.40044 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.38583 * 126.25645 * 0.02562 * 9 7 2 11 11 N 1.30674 * 113.55349 * 179.97438 * 10 9 7 12 12 C 1.29523 * 117.62969 * 359.97438 * 11 10 9 13 13 C 1.50703 * 124.55672 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46592 * 90.03011 * 13 12 11 15 15 C 1.52995 * 109.46802 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.47182 * 180.02562 * 15 14 13 17 17 S 1.70876 * 110.87662 * 0.02562 * 12 11 10 18 18 H 0.97005 * 119.99908 * 0.02562 * 1 2 3 19 19 H 1.08006 * 123.21903 * 0.24774 * 10 9 7 20 20 H 1.08997 * 109.46642 * 210.02490 * 13 12 11 21 21 H 1.08992 * 109.47449 * 330.03302 * 13 12 11 22 22 H 1.08999 * 109.46979 * 299.99626 * 14 13 12 23 23 H 1.09001 * 109.47160 * 59.99437 * 14 13 12 24 24 H 1.08999 * 109.47466 * 299.99839 * 15 14 13 25 25 H 1.09001 * 109.47305 * 60.00037 * 15 14 13 26 26 H 0.96693 * 114.00110 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0965 1.6962 -1.2124 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0090 -1.2131 0.0005 8 1 3.0890 -1.2132 0.0010 9 6 1.3087 -2.4259 0.0005 10 6 -0.0689 -2.5769 -0.0005 11 7 -0.4575 -3.8245 -0.0007 12 6 0.4595 -4.7392 -0.0006 13 6 0.1882 -6.2216 -0.0003 14 6 0.0971 -6.7236 -1.4428 15 6 -0.1777 -8.2287 -1.4426 16 8 -0.2622 -8.6977 -2.7898 17 16 2.0182 -4.0389 0.0007 18 1 -0.4850 0.8401 -0.0004 19 1 -0.7555 -1.7432 -0.0053 20 1 0.9980 -6.7390 0.5140 21 1 -0.7529 -6.4187 0.5130 22 1 -0.7127 -6.2061 -1.9571 23 1 1.0382 -6.5264 -1.9562 24 1 0.6323 -8.7459 -0.9284 25 1 -1.1187 -8.4261 -0.9290 26 1 -0.4357 -9.6458 -2.8660 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260856224.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:49 Heat of formation + Delta-G solvation = -42.586094 kcal Electronic energy + Delta-G solvation = -11540.590818 eV Core-core repulsion = 9323.799240 eV Total energy + Delta-G solvation = -2216.791577 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.63959 -36.86419 -34.37729 -32.99887 -29.34687 -27.03203 -24.08803 -22.31755 -20.90630 -19.08104 -17.35090 -16.57335 -16.46107 -15.27151 -14.82267 -14.06403 -13.45218 -12.99301 -12.84188 -12.32224 -11.94960 -11.64457 -11.37161 -11.25360 -11.10034 -10.71900 -10.50863 -10.29059 -9.78642 -9.72432 -9.58666 -7.97319 -7.91985 -7.18898 -6.97655 -4.57914 2.41463 2.88909 2.92846 3.02916 3.22075 3.62435 3.74068 4.30509 4.52120 5.09509 5.29156 5.38082 5.60733 5.84552 6.09271 6.12809 6.28126 6.66767 6.72170 6.78680 7.15638 7.43377 7.72682 7.78541 8.13842 8.35497 8.65747 9.81972 9.83438 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.073356 B = 0.006548 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.608435 B = 4274.993505 C = 4387.235141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.064 3.936 3 Si 0.936 3.064 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.376 4.376 8 H 0.087 0.913 9 C 0.015 3.985 10 C -0.142 4.142 11 N -0.424 5.424 12 C -0.130 4.130 13 C -0.001 4.001 14 C -0.112 4.112 15 C 0.076 3.924 16 O -0.576 6.576 17 S -0.062 6.062 18 H 0.290 0.710 19 H 0.196 0.804 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -6.044 -0.462 6.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.159 4.159 3 Si 0.759 3.241 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.413 4.413 8 H 0.105 0.895 9 C -0.106 4.106 10 C -0.296 4.296 11 N -0.135 5.135 12 C -0.398 4.398 13 C -0.042 4.042 14 C -0.151 4.151 15 C -0.002 4.002 16 O -0.381 6.381 17 S 0.188 5.812 18 H 0.102 0.898 19 H 0.212 0.788 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.871 -5.973 -0.574 6.285 hybrid contribution -0.307 0.830 0.156 0.898 sum 1.564 -5.143 -0.419 5.392 Atomic orbital electron populations 1.69471 1.07837 1.29888 1.31840 1.26137 0.95121 1.01851 0.92808 0.85888 0.79665 0.78271 0.80295 1.18481 1.19733 1.18486 1.19015 0.94968 0.88784 1.38504 0.89509 1.23314 0.95699 0.93093 0.98493 1.23113 0.93555 0.91945 1.21025 1.65397 1.36983 1.01756 1.09394 1.24882 0.90039 0.97645 1.27270 1.19445 1.00884 0.89126 0.94786 1.21567 1.03056 0.92298 0.98189 1.22297 0.99165 0.96129 0.82567 1.86525 1.95422 1.28372 1.27765 1.82938 1.15152 1.03841 1.79302 0.89843 0.78817 0.92272 0.91418 0.91209 0.91538 0.93944 0.93831 0.78148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.91 10.18 55.56 0.57 -18.34 15 2 C 0.06 1.52 5.50 -17.27 -0.09 1.42 15 3 Si 0.94 17.47 29.56 -169.99 -5.03 12.45 15 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 15 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 7 C -0.38 -9.67 9.42 -38.22 -0.36 -10.03 15 8 H 0.09 2.08 7.85 -52.48 -0.41 1.67 15 9 C 0.02 0.42 6.30 -38.78 -0.24 0.18 15 10 C -0.14 -4.04 10.55 -17.92 -0.19 -4.23 15 11 N -0.42 -11.57 10.48 -10.84 -0.11 -11.69 15 12 C -0.13 -3.18 6.61 -13.25 -0.09 -3.27 15 13 C 0.00 -0.02 5.79 -27.88 -0.16 -0.18 15 14 C -0.11 -2.01 5.57 -26.73 -0.15 -2.16 15 15 C 0.08 1.06 7.05 37.16 0.26 1.32 15 16 O -0.58 -8.05 13.66 -35.23 -0.48 -8.53 15 17 S -0.06 -1.50 23.13 -107.50 -2.49 -3.99 15 18 H 0.29 6.37 8.30 -40.82 -0.34 6.03 15 19 H 0.20 5.62 5.36 -52.48 -0.28 5.34 15 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 22 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 23 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.04 0.52 8.14 -51.93 -0.42 0.09 15 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 15 26 H 0.37 3.11 9.12 45.56 0.42 3.53 15 LS Contribution 244.58 15.07 3.69 3.69 Total: -1.00 -29.83 244.58 -6.83 -36.65 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -1.95 Total: 6.70 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -1.02 Total: -16.94 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.45 Total: -30.03 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.48 Total: -8.53 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.49 Total: -3.99 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.83 -6.83 -36.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856224.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.932 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds