Wall clock time and date at job start Mon Mar 30 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48500 * 109.47087 * 239.99532 * 3 2 1 5 5 H 1.48502 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47337 * 119.99733 * 3 2 1 7 7 C 1.40075 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.40044 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.38583 * 126.25645 * 0.02562 * 9 7 2 11 11 N 1.30674 * 113.55349 * 179.97438 * 10 9 7 12 12 C 1.29523 * 117.62969 * 359.97438 * 11 10 9 13 13 C 1.50703 * 124.55672 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46592 * 90.03011 * 13 12 11 15 15 C 1.52995 * 109.46802 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.47182 * 180.02562 * 15 14 13 17 17 S 1.70876 * 110.87662 * 0.02562 * 12 11 10 18 18 H 0.97005 * 119.99908 * 0.02562 * 1 2 3 19 19 H 1.08006 * 123.21903 * 0.24774 * 10 9 7 20 20 H 1.08997 * 109.46642 * 210.02490 * 13 12 11 21 21 H 1.08992 * 109.47449 * 330.03302 * 13 12 11 22 22 H 1.08999 * 109.46979 * 299.99626 * 14 13 12 23 23 H 1.09001 * 109.47160 * 59.99437 * 14 13 12 24 24 H 1.08999 * 109.47466 * 299.99839 * 15 14 13 25 25 H 1.09001 * 109.47305 * 60.00037 * 15 14 13 26 26 H 0.96693 * 114.00110 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0965 1.6962 -1.2124 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0090 -1.2131 0.0005 8 1 3.0890 -1.2132 0.0010 9 6 1.3087 -2.4259 0.0005 10 6 -0.0689 -2.5769 -0.0005 11 7 -0.4575 -3.8245 -0.0007 12 6 0.4595 -4.7392 -0.0006 13 6 0.1882 -6.2216 -0.0003 14 6 0.0971 -6.7236 -1.4428 15 6 -0.1777 -8.2287 -1.4426 16 8 -0.2622 -8.6977 -2.7898 17 16 2.0182 -4.0389 0.0007 18 1 -0.4850 0.8401 -0.0004 19 1 -0.7555 -1.7432 -0.0053 20 1 0.9980 -6.7390 0.5140 21 1 -0.7529 -6.4187 0.5130 22 1 -0.7127 -6.2061 -1.9571 23 1 1.0382 -6.5264 -1.9562 24 1 0.6323 -8.7459 -0.9284 25 1 -1.1187 -8.4261 -0.9290 26 1 -0.4357 -9.6458 -2.8660 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260856224.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:49 Heat of formation + Delta-G solvation = -64.357633 kcal Electronic energy + Delta-G solvation = -11541.534903 eV Core-core repulsion = 9323.799240 eV Total energy + Delta-G solvation = -2217.735662 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.56655 -38.03690 -36.18931 -34.52854 -31.24119 -28.62533 -25.90644 -24.07172 -22.38156 -21.00872 -18.81691 -18.41046 -18.02323 -16.70882 -16.35001 -15.65783 -15.04544 -14.64285 -14.56846 -13.87786 -13.66867 -13.26674 -13.23416 -12.84853 -12.70393 -12.08623 -11.92933 -11.84766 -11.59552 -11.45142 -10.84882 -9.96410 -9.93539 -9.16880 -8.79143 -6.56320 0.53687 1.21051 1.40336 1.52952 1.55099 1.64814 2.13309 2.47789 3.06055 3.40978 3.98016 4.07711 4.37045 4.46901 4.63927 4.75282 4.79444 4.87464 5.17344 5.26187 5.32394 5.50368 5.79609 6.19818 6.41097 6.57641 6.96552 7.80120 8.05260 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.073356 B = 0.006548 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.608435 B = 4274.993505 C = 4387.235141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.022 3.978 3 Si 1.016 2.984 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.252 1.252 7 C -0.400 4.400 8 H 0.098 0.902 9 C -0.018 4.018 10 C -0.186 4.186 11 N -0.452 5.452 12 C -0.126 4.126 13 C 0.000 4.000 14 C -0.107 4.107 15 C 0.084 3.916 16 O -0.598 6.598 17 S -0.037 6.037 18 H 0.301 0.699 19 H 0.180 0.820 20 H 0.086 0.914 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -6.466 -0.295 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.198 4.198 3 Si 0.833 3.167 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.176 1.176 7 C -0.436 4.436 8 H 0.117 0.883 9 C -0.139 4.139 10 C -0.338 4.338 11 N -0.164 5.164 12 C -0.396 4.396 13 C -0.041 4.041 14 C -0.146 4.146 15 C 0.007 3.993 16 O -0.407 6.407 17 S 0.212 5.788 18 H 0.113 0.887 19 H 0.196 0.804 20 H 0.105 0.895 21 H 0.096 0.904 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.913 -6.421 -0.410 7.063 hybrid contribution -0.663 0.885 0.082 1.109 sum 2.250 -5.536 -0.328 5.985 Atomic orbital electron populations 1.69530 1.09577 1.31614 1.31032 1.27295 0.95883 1.05318 0.91315 0.84734 0.78298 0.72995 0.80665 1.17713 1.18487 1.17560 1.19478 0.95754 0.89398 1.38997 0.88343 1.23684 0.95964 0.95092 0.99196 1.22979 0.94175 0.92276 1.24336 1.65401 1.38140 1.01942 1.10916 1.25880 0.89846 0.99640 1.24255 1.19619 1.02428 0.85867 0.96229 1.21428 1.01237 0.95461 0.96514 1.22142 1.01042 0.93088 0.83048 1.86448 1.95604 1.30919 1.27753 1.82647 1.14710 1.02125 1.79283 0.88706 0.80405 0.89548 0.90381 0.94052 0.92951 0.91393 0.92092 0.75171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.87 10.18 21.86 0.22 -39.65 15 2 C 0.02 1.05 5.50 85.28 0.47 1.52 15 3 Si 1.02 34.72 29.56 68.60 2.03 36.75 15 4 H -0.25 -8.34 7.11 99.48 0.71 -7.64 15 5 H -0.26 -8.36 7.11 99.48 0.71 -7.65 15 6 H -0.25 -8.24 7.11 99.48 0.71 -7.53 15 7 C -0.40 -20.78 9.42 23.15 0.22 -20.56 15 8 H 0.10 4.70 7.85 -2.91 -0.02 4.68 15 9 C -0.02 -1.00 6.30 22.79 0.14 -0.86 15 10 C -0.19 -10.95 10.55 84.95 0.90 -10.06 15 11 N -0.45 -25.35 10.48 -188.22 -1.97 -27.32 15 12 C -0.13 -6.16 6.61 88.45 0.59 -5.57 15 13 C 0.00 -0.01 5.79 29.85 0.17 0.16 15 14 C -0.11 -3.73 5.57 30.59 0.17 -3.56 15 15 C 0.08 2.10 7.05 71.98 0.51 2.61 15 16 O -0.60 -15.24 13.66 -148.98 -2.04 -17.27 15 17 S -0.04 -1.82 23.13 -56.49 -1.31 -3.13 15 18 H 0.30 13.31 8.30 -92.70 -0.77 12.54 15 19 H 0.18 10.88 5.36 -2.91 -0.02 10.86 15 20 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 21 H 0.08 2.74 8.14 -2.39 -0.02 2.73 15 22 H 0.04 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 26 H 0.40 5.44 9.12 -74.06 -0.68 4.76 15 Total: -1.00 -65.88 244.58 0.62 -65.26 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.52 Total: 21.67 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 3.16 Total: -36.32 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.75 Total: -66.97 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -2.04 Total: -17.27 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -1.31 Total: -3.13 kcal Total: -65.88 0.62 -65.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856224.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.907 kcal (2) G-P(sol) polarization free energy of solvation -65.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds