Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86794 * 120.00212 * 2 1 4 4 H 1.48499 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47298 * 300.00089 * 3 2 1 6 6 H 1.48501 * 109.47218 * 60.00400 * 3 2 1 7 7 C 1.39985 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.41738 * 119.99974 * 359.97438 * 7 2 1 10 10 N 1.32012 * 127.58467 * 359.97438 * 9 7 2 11 11 O 1.20378 * 111.24702 * 180.02562 * 10 9 7 12 12 C 1.35477 * 113.28301 * 359.97438 * 11 10 9 13 13 C 1.33372 * 106.74887 * 0.03722 * 12 11 10 14 14 C 1.51634 * 116.92739 * 179.97438 * 13 12 11 15 15 S 1.83533 * 103.14048 * 343.03612 * 14 13 12 16 16 O 1.42097 * 109.47014 * 270.19261 * 15 14 13 17 17 C 1.52221 * 137.17264 * 180.08362 * 12 11 10 18 18 H 0.96999 * 119.99624 * 0.02562 * 1 2 3 19 19 H 1.09002 * 110.71406 * 101.50026 * 14 13 12 20 20 H 1.08999 * 110.71250 * 224.57965 * 14 13 12 21 21 H 1.09000 * 110.67177 * 315.37809 * 17 12 11 22 22 H 1.09000 * 110.67816 * 78.36615 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3462 -0.0006 5 1 1.8829 2.3964 -1.2124 6 1 1.8829 2.3963 1.2126 7 6 2.0074 -1.2123 -0.0005 8 1 3.0874 -1.2124 -0.0010 9 6 1.2986 -2.4398 -0.0005 10 7 -0.0100 -2.6140 0.0004 11 8 -0.2943 -3.7837 0.0006 12 6 0.7884 -4.5980 -0.0007 13 6 1.8632 -3.8084 -0.0011 14 6 3.2170 -4.4913 -0.0019 15 16 2.8198 -6.2057 0.5193 16 8 2.8897 -6.2984 1.9355 17 6 1.0585 -6.0960 -0.0027 18 1 -0.4849 0.8401 -0.0004 19 1 3.6523 -4.4832 -1.0012 20 1 3.8886 -4.0168 0.7135 21 1 0.4127 -6.6045 0.7132 22 1 0.9242 -6.5101 -1.0021 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260867622.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = -5.549793 kcal Electronic energy + Delta-G solvation = -11950.854969 eV Core-core repulsion = 9599.836312 eV Total energy + Delta-G solvation = -2351.018657 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.60716 -36.94592 -36.30883 -35.65892 -32.79027 -29.58439 -28.49747 -27.26613 -22.58118 -21.54924 -18.76421 -18.52901 -17.81197 -17.60887 -16.46965 -16.03963 -15.63790 -15.42319 -14.86767 -14.24373 -13.80438 -13.38611 -13.12692 -13.08967 -12.90554 -12.62133 -11.91387 -11.62972 -11.35932 -11.28515 -10.24948 -9.84791 -9.44372 -8.62785 -6.69554 0.86540 0.94001 1.20698 1.27038 1.31934 1.50488 1.95310 2.16294 2.62608 2.78064 3.20243 3.83466 4.25900 4.34008 4.46923 4.61279 4.62555 4.87977 4.96706 5.26499 5.50740 6.16298 6.48725 6.76999 8.35828 8.52649 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.053102 B = 0.009547 C = 0.008432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.161675 B = 2932.120758 C = 3320.011162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.015 3.985 3 Si 1.003 2.997 4 H -0.247 1.247 5 H -0.262 1.262 6 H -0.269 1.269 7 C -0.477 4.477 8 H 0.095 0.905 9 C 0.137 3.863 10 N -0.445 5.445 11 O 0.020 5.980 12 C -0.089 4.089 13 C -0.283 4.283 14 C -0.340 4.340 15 S 1.369 4.631 16 O -0.915 6.915 17 C -0.331 4.331 18 H 0.283 0.717 19 H 0.165 0.835 20 H 0.089 0.911 21 H 0.115 0.885 22 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.277 -11.139 -5.068 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.201 4.201 3 Si 0.822 3.178 4 H -0.170 1.170 5 H -0.187 1.187 6 H -0.194 1.194 7 C -0.515 4.515 8 H 0.113 0.887 9 C -0.011 4.011 10 N -0.173 5.173 11 O -0.028 6.028 12 C -0.151 4.151 13 C -0.288 4.288 14 C -0.476 4.476 15 S 1.565 4.435 16 O -0.911 6.911 17 C -0.466 4.466 18 H 0.093 0.907 19 H 0.182 0.818 20 H 0.108 0.892 21 H 0.134 0.866 22 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.591 -11.218 -4.578 14.298 hybrid contribution -0.751 2.514 1.134 2.858 sum 6.841 -8.704 -3.444 11.594 Atomic orbital electron populations 1.70008 1.09353 1.29953 1.35696 1.27071 0.95803 1.05276 0.91925 0.84857 0.79279 0.74878 0.78787 1.17033 1.18664 1.19425 1.19172 0.94595 0.88616 1.49118 0.88726 1.21953 0.88295 0.94074 0.96807 1.74619 1.16417 0.92231 1.34064 1.84607 1.33319 1.12151 1.72731 1.25137 0.88095 0.96725 1.05182 1.22732 0.96875 0.93443 1.15766 1.26525 0.95251 1.15247 1.10561 1.69807 0.88397 0.93212 0.92049 1.92963 1.82037 1.82121 1.33969 1.27363 1.19703 0.86865 1.12711 0.90737 0.81755 0.89225 0.86632 0.79413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.68 12.05 21.83 0.26 -49.42 14 2 C 0.01 0.83 5.50 85.28 0.47 1.29 14 3 Si 1.00 41.39 29.56 68.60 2.03 43.42 14 4 H -0.25 -9.51 7.11 99.48 0.71 -8.81 14 5 H -0.26 -10.23 7.11 99.48 0.71 -9.52 14 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 14 7 C -0.48 -28.16 9.49 23.56 0.22 -27.93 14 8 H 0.09 5.14 7.85 -2.91 -0.02 5.12 14 9 C 0.14 8.30 7.03 42.59 0.30 8.60 14 10 N -0.44 -28.23 10.49 -49.24 -0.52 -28.74 14 11 O 0.02 1.11 11.13 57.76 0.64 1.75 14 12 C -0.09 -3.98 7.97 25.07 0.20 -3.78 14 13 C -0.28 -13.54 6.95 -18.06 -0.13 -13.67 14 14 C -0.34 -10.79 7.40 71.53 0.53 -10.26 14 15 S 1.37 30.45 14.93 -56.49 -0.84 29.61 14 16 O -0.92 -34.38 18.15 -148.98 -2.70 -37.08 14 17 C -0.33 -8.64 7.44 71.72 0.53 -8.11 14 18 H 0.28 15.42 8.29 -92.71 -0.77 14.65 14 19 H 0.16 3.73 8.14 -2.39 -0.02 3.71 14 20 H 0.09 3.09 8.14 -2.39 -0.02 3.07 14 21 H 0.12 2.95 8.14 -2.39 -0.02 2.93 14 22 H 0.19 2.86 8.14 -2.39 -0.02 2.84 14 Total: -1.00 -92.64 218.10 2.25 -90.39 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.25 Total: 3.92 kcal Atomic # 6 Polarization: -55.98 SS G_CDS: 2.13 Total: -53.85 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -0.25 Total: -78.16 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -2.06 Total: -35.33 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 30.45 SS G_CDS: -0.84 Total: 29.61 kcal Total: -92.64 2.25 -90.39 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867622.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.844 kcal (2) G-P(sol) polarization free energy of solvation -92.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds