Wall clock time and date at job start Mon Mar 30 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 111.00246 * 2 1 4 4 C 1.46907 * 111.00068 * 123.95226 * 2 1 3 5 5 C 1.53001 * 109.47094 * 169.99999 * 4 2 1 6 6 N 1.46898 * 109.47158 * 180.02562 * 5 4 2 7 7 C 1.46895 * 111.00205 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47136 * 34.99815 * 7 6 5 9 9 C 1.50699 * 109.47286 * 154.99798 * 7 6 5 10 10 H 1.08005 * 120.00010 * 94.62860 * 9 7 6 11 11 C 1.37878 * 120.00120 * 274.62697 * 9 7 6 12 12 N 1.31513 * 119.99864 * 5.12087 * 11 9 7 13 13 Si 1.86800 * 120.00248 * 185.11651 * 11 9 7 14 14 H 1.48497 * 109.46938 * 89.99946 * 13 11 9 15 15 H 1.48492 * 109.47056 * 210.00462 * 13 11 9 16 16 H 1.48507 * 109.46967 * 330.00243 * 13 11 9 17 17 C 1.53003 * 109.47052 * 274.99866 * 7 6 5 18 18 C 1.52999 * 117.51784 * 107.82314 * 17 7 6 19 19 C 1.52999 * 117.50135 * 176.45482 * 17 7 6 20 20 H 1.09005 * 109.47121 * 296.04633 * 1 2 3 21 21 H 1.08996 * 109.47370 * 56.04770 * 1 2 3 22 22 H 1.09000 * 109.46915 * 176.04750 * 1 2 3 23 23 H 1.09003 * 109.47252 * 183.95485 * 3 2 1 24 24 H 1.09005 * 109.47091 * 303.95031 * 3 2 1 25 25 H 1.08998 * 109.47464 * 63.95203 * 3 2 1 26 26 H 1.08995 * 109.46871 * 50.00059 * 4 2 1 27 27 H 1.08996 * 109.46981 * 290.00137 * 4 2 1 28 28 H 1.08994 * 109.47159 * 59.99717 * 5 4 2 29 29 H 1.09004 * 109.47105 * 300.00189 * 5 4 2 30 30 H 1.00906 * 110.99733 * 303.95379 * 6 5 4 31 31 H 0.97003 * 120.00220 * 179.97438 * 12 11 9 32 32 H 1.09003 * 115.54821 * 322.12286 * 17 7 6 33 33 H 1.09004 * 117.49338 * 214.97198 * 18 17 7 34 34 H 1.08991 * 117.49891 * 359.97438 * 18 17 7 35 35 H 1.09001 * 117.49545 * 359.97172 * 19 17 7 36 36 H 1.09001 * 117.50242 * 144.99277 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1377 5 6 3.5045 -0.9553 0.9704 6 7 4.0308 -1.7218 2.1077 7 6 5.4804 -1.9230 1.9812 8 1 5.9301 -1.0447 1.5180 9 6 6.0797 -2.1325 3.3479 10 1 6.2281 -3.1337 3.7248 11 6 6.4385 -1.0460 4.1173 12 7 6.1662 0.1720 3.7027 13 14 7.3113 -1.3041 5.7485 14 1 8.7796 -1.3183 5.5274 15 1 6.9612 -0.1996 6.6773 16 1 6.8868 -2.5995 6.3376 17 6 5.7507 -3.1527 1.1118 18 6 6.2961 -2.9158 -0.2979 19 6 7.2094 -3.4839 0.7904 20 1 -0.3633 0.4513 0.9233 21 1 -0.3634 0.5739 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0828 1.3431 -0.0709 24 1 1.5899 1.9163 -0.8525 25 1 1.7044 1.8723 0.9232 26 1 1.5090 -1.7406 1.1757 27 1 1.7975 -0.2247 2.0628 28 1 3.9909 0.0193 0.9323 29 1 3.7024 -1.4966 0.0451 30 1 3.8033 -1.2731 2.9824 31 1 6.4182 0.9363 4.2441 32 1 5.0642 -3.9877 1.2522 33 1 5.9684 -3.5950 -1.0849 34 1 6.4621 -1.8838 -0.6064 35 1 7.9765 -2.8254 1.1978 36 1 7.4826 -4.5367 0.7192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261034283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:42 Heat of formation + Delta-G solvation = 22.960327 kcal Electronic energy + Delta-G solvation = -14500.667371 eV Core-core repulsion = 12213.350079 eV Total energy + Delta-G solvation = -2287.317291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.58854 -36.70943 -33.87634 -32.24651 -28.84134 -27.36496 -25.96670 -23.25704 -22.24000 -21.46720 -20.32765 -18.96008 -16.41271 -15.35728 -15.26668 -14.76979 -14.59874 -14.35031 -13.74881 -13.00573 -12.89874 -12.43645 -12.18292 -11.79589 -11.52635 -11.41226 -11.26499 -10.95220 -10.69911 -10.68339 -10.45382 -10.41180 -9.75089 -9.36926 -9.23715 -8.65669 -8.56403 -8.10373 -6.99111 -6.11141 -4.15689 3.27507 3.34609 3.38671 4.21866 4.37604 4.86486 5.15509 5.33454 5.42440 5.57069 5.64315 5.66433 5.84236 5.91776 5.96347 5.99046 6.01022 6.13443 6.25971 6.38036 6.42631 6.59201 6.72595 6.76813 6.92039 7.01747 7.23226 7.30917 7.39804 7.54565 7.86087 8.14588 8.70410 8.88980 9.04242 9.51846 10.96867 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.008818 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.404215 B = 3174.526864 C = 3924.707292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.023 3.977 4 C 0.059 3.941 5 C 0.066 3.934 6 N -0.685 5.685 7 C 0.236 3.764 8 H 0.023 0.977 9 C -0.504 4.504 10 H 0.060 0.940 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.272 1.272 17 C -0.107 4.107 18 C -0.203 4.203 19 C -0.176 4.176 20 H 0.021 0.979 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.022 0.978 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.021 0.979 29 H 0.063 0.937 30 H 0.340 0.660 31 H 0.262 0.738 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 0.010 -5.548 8.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.064 4.064 6 N -0.317 5.317 7 C 0.129 3.871 8 H 0.041 0.959 9 C -0.543 4.543 10 H 0.078 0.922 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.197 1.197 17 C -0.126 4.126 18 C -0.240 4.240 19 C -0.214 4.214 20 H 0.039 0.961 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.094 0.906 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.255 -0.641 -6.206 8.835 hybrid contribution 0.537 1.320 1.806 2.300 sum -5.718 0.678 -4.400 7.247 Atomic orbital electron populations 1.22344 0.88085 1.01887 0.99886 1.61961 1.07141 1.13854 1.44259 1.22420 1.01644 0.88801 0.99704 1.22169 0.97279 0.97436 0.90047 1.21827 0.91708 0.96319 0.96594 1.60953 1.16795 1.50420 1.03540 1.18715 0.83995 0.90495 0.93887 0.95890 1.21175 1.39648 0.92831 1.00624 0.92197 1.25078 0.95483 0.95221 0.98248 1.69952 1.46935 0.97880 1.38485 0.86539 0.79956 0.77845 0.83351 1.20654 1.21400 1.19723 1.22428 0.94399 1.01504 0.94273 1.22952 1.07210 1.00842 0.93036 1.22712 0.95506 0.99844 1.03291 0.96070 0.91890 0.91550 0.90718 0.92082 0.95903 0.90644 0.95381 0.96137 0.91870 0.84135 0.92866 0.89316 0.90600 0.89992 0.89015 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.57 60.06 0.57 0.91 16 2 N -0.55 -8.55 5.02 -251.26 -1.26 -9.81 16 3 C 0.02 0.33 9.32 60.06 0.56 0.89 16 4 C 0.06 1.02 5.22 -3.82 -0.02 1.00 16 5 C 0.07 1.34 5.41 -3.82 -0.02 1.32 16 6 N -0.68 -15.76 6.30 -107.95 -0.68 -16.44 16 7 C 0.24 5.85 2.12 -68.87 -0.15 5.70 16 8 H 0.02 0.65 7.13 -51.93 -0.37 0.28 16 9 C -0.50 -13.52 8.03 -34.44 -0.28 -13.80 16 10 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 11 C 0.06 1.68 5.45 -17.82 -0.10 1.59 16 12 N -0.89 -25.05 13.01 55.43 0.72 -24.33 16 13 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 C -0.11 -2.33 5.18 -90.62 -0.47 -2.80 16 18 C -0.20 -3.90 10.18 -26.73 -0.27 -4.17 16 19 C -0.18 -3.50 9.96 -26.73 -0.27 -3.77 16 20 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 21 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 22 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 23 H 0.07 1.19 6.47 -51.93 -0.34 0.86 16 24 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 27 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.02 0.46 6.47 -51.93 -0.34 0.12 16 29 H 0.06 1.31 8.01 -51.93 -0.42 0.89 16 30 H 0.34 8.40 8.35 -39.29 -0.33 8.07 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.61 8.07 -51.93 -0.42 1.19 16 35 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 295.65 15.07 4.46 4.46 Total: -1.00 -27.27 295.65 -8.61 -35.88 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.39 Total: 7.37 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.43 Total: -13.13 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -1.22 Total: -50.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.27 -8.61 -35.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.840 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds