Wall clock time and date at job start Mon Mar 30 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46908 * 111.00036 * 2 1 4 4 C 1.46900 * 110.99677 * 123.94941 * 2 1 3 5 5 C 1.52996 * 109.47408 * 66.04804 * 4 2 1 6 6 N 1.46889 * 109.47670 * 179.97438 * 5 4 2 7 7 C 1.46901 * 111.00592 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46529 * 324.99876 * 7 6 5 9 9 C 1.50694 * 109.47292 * 205.00523 * 7 6 5 10 10 H 1.08009 * 119.99916 * 265.30544 * 9 7 6 11 11 C 1.37878 * 120.00499 * 85.30754 * 9 7 6 12 12 N 1.31507 * 119.99780 * 354.30047 * 11 9 7 13 13 Si 1.86799 * 120.00069 * 174.03016 * 11 9 7 14 14 H 1.48506 * 109.47395 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47380 * 119.99926 * 13 11 9 16 16 H 1.48499 * 109.46888 * 239.99991 * 13 11 9 17 17 C 1.52994 * 109.47294 * 84.99927 * 7 6 5 18 18 C 1.52999 * 117.50118 * 252.54703 * 17 7 6 19 19 C 1.52999 * 117.50017 * 183.88728 * 17 7 6 20 20 H 1.08997 * 109.47586 * 296.05218 * 1 2 3 21 21 H 1.09001 * 109.46891 * 56.04736 * 1 2 3 22 22 H 1.09000 * 109.46967 * 176.04560 * 1 2 3 23 23 H 1.08996 * 109.47017 * 183.95093 * 3 2 1 24 24 H 1.09002 * 109.46499 * 303.94985 * 3 2 1 25 25 H 1.08994 * 109.46961 * 63.94565 * 3 2 1 26 26 H 1.08997 * 109.47437 * 306.04469 * 4 2 1 27 27 H 1.08999 * 109.47008 * 186.04768 * 4 2 1 28 28 H 1.09006 * 109.46594 * 59.99708 * 5 4 2 29 29 H 1.08999 * 109.47007 * 299.99965 * 5 4 2 30 30 H 1.00906 * 111.00262 * 56.04534 * 6 5 4 31 31 H 0.97007 * 120.00117 * 0.70409 * 12 11 9 32 32 H 1.09000 * 115.54811 * 38.20927 * 17 7 6 33 33 H 1.09009 * 117.49699 * 359.97438 * 18 17 7 34 34 H 1.08996 * 117.50307 * 145.01672 * 18 17 7 35 35 H 1.09003 * 117.49861 * 214.98098 * 19 17 7 36 36 H 1.08996 * 117.49886 * 359.96902 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9706 6 7 2.1583 -3.0085 2.1078 7 6 1.8277 -4.4342 1.9808 8 1 0.8468 -4.5397 1.5172 9 6 1.8082 -5.0690 3.3474 10 1 2.6896 -5.5668 3.7242 11 6 0.6653 -5.0145 4.1167 12 7 -0.3698 -4.3141 3.7077 13 14 0.5846 -5.9416 5.7364 14 1 1.8681 -6.6530 5.9642 15 1 0.3464 -4.9823 6.8447 16 1 -0.5251 -6.9272 5.6878 17 6 2.8797 -5.1263 1.1119 18 6 2.4661 -5.5426 -0.3011 19 6 2.6631 -6.6048 0.7833 20 1 -0.3634 0.4513 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0828 1.3433 -0.0708 24 1 1.5898 1.9163 -0.8525 25 1 1.7043 1.8724 0.9232 26 1 1.5611 -0.3871 2.0628 27 1 3.0796 -0.6610 1.1757 28 1 2.0659 -2.6213 0.0453 29 1 0.5472 -2.3474 0.9325 30 1 1.8209 -2.6354 2.9825 31 1 -0.3330 -3.8441 2.8599 32 1 3.9056 -4.7879 1.2568 33 1 1.4443 -5.3238 -0.6115 34 1 3.2201 -5.4786 -1.0857 35 1 3.5466 -7.2391 0.7118 36 1 1.7714 -7.0846 1.1867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:43 Heat of formation + Delta-G solvation = 1.238906 kcal Electronic energy + Delta-G solvation = -14553.221309 eV Core-core repulsion = 12264.962107 eV Total energy + Delta-G solvation = -2288.259203 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35446 -38.32737 -35.91913 -34.26732 -30.42625 -28.54955 -27.58604 -24.99963 -23.93466 -23.14252 -21.89552 -21.21272 -18.90752 -16.92131 -16.83434 -16.15774 -16.01473 -15.88102 -15.53300 -15.10124 -14.51993 -14.21069 -14.03456 -13.33525 -13.06598 -12.70183 -12.67628 -12.57433 -12.44083 -12.34004 -12.13995 -11.94076 -11.58412 -11.37529 -10.99866 -10.68585 -10.26288 -9.42188 -9.11299 -8.66023 -6.38513 1.53412 1.60565 1.78727 2.53569 2.81686 3.10721 3.18616 3.72704 3.99314 4.08516 4.17258 4.24838 4.25890 4.40582 4.48483 4.55420 4.61974 4.66213 4.68573 4.77197 4.90808 4.96255 4.96677 4.98775 5.04073 5.22564 5.31382 5.44175 5.86110 5.96083 6.05888 6.20203 6.49133 6.59578 6.81413 7.41438 8.71258 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.008831 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.530162 B = 3169.722224 C = 3913.292447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.557 5.557 3 C 0.026 3.974 4 C 0.071 3.929 5 C 0.073 3.927 6 N -0.684 5.684 7 C 0.229 3.771 8 H -0.028 1.028 9 C -0.589 4.589 10 H 0.047 0.953 11 C -0.027 4.027 12 N -0.935 5.935 13 Si 1.120 2.880 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.127 4.127 18 C -0.181 4.181 19 C -0.168 4.168 20 H 0.021 0.979 21 H 0.089 0.911 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.083 0.917 28 H 0.065 0.935 29 H -0.003 1.003 30 H 0.325 0.675 31 H 0.254 0.746 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.854 5.938 -6.315 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.281 5.281 3 C -0.122 4.122 4 C -0.057 4.057 5 C -0.057 4.057 6 N -0.315 5.315 7 C 0.121 3.879 8 H -0.011 1.011 9 C -0.628 4.628 10 H 0.065 0.935 11 C -0.226 4.226 12 N -0.572 5.572 13 Si 0.942 3.058 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.146 4.146 18 C -0.217 4.217 19 C -0.206 4.206 20 H 0.039 0.961 21 H 0.108 0.892 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.016 0.984 30 H 0.142 0.858 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.679 5.325 -5.758 8.663 hybrid contribution -0.568 0.737 -0.340 0.991 sum 3.111 6.062 -6.099 9.145 Atomic orbital electron populations 1.22436 0.87271 1.01884 1.00959 1.61953 1.08386 1.15054 1.42730 1.22446 1.01254 0.87418 1.01095 1.21934 1.00499 0.92544 0.90749 1.21807 0.95131 0.93388 0.95421 1.60959 1.62870 1.04015 1.03620 1.18697 0.89922 0.85065 0.94168 1.01095 1.22276 1.00290 1.37683 1.02533 0.93486 1.27255 0.92143 0.96343 1.06819 1.70918 1.33302 1.30969 1.22041 0.82880 0.76255 0.75222 0.71431 1.19673 1.20693 1.20833 1.22134 0.99559 0.96922 0.96008 1.23003 1.01589 1.04703 0.92446 1.22770 1.02831 0.92115 1.02881 0.96052 0.89230 0.92870 0.90654 0.89651 0.95681 0.96204 0.89837 0.91619 0.98445 0.85798 0.93596 0.88954 0.90975 0.87203 0.87432 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.32 127.69 1.19 1.82 16 2 N -0.56 -16.26 5.02 -948.85 -4.76 -21.02 16 3 C 0.03 0.57 9.57 127.69 1.22 1.79 16 4 C 0.07 2.41 5.22 86.30 0.45 2.86 16 5 C 0.07 2.95 5.41 86.30 0.47 3.41 16 6 N -0.68 -31.87 6.30 -495.49 -3.12 -34.99 16 7 C 0.23 11.57 1.73 44.17 0.08 11.65 16 8 H -0.03 -1.62 6.44 -2.39 -0.02 -1.64 16 9 C -0.59 -32.55 8.03 25.60 0.21 -32.34 16 10 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 11 C -0.03 -1.50 5.45 84.66 0.46 -1.03 16 12 N -0.93 -55.81 13.61 21.45 0.29 -55.52 16 13 Si 1.12 49.93 29.91 68.60 2.05 51.98 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 17 C -0.13 -5.52 5.17 -10.80 -0.06 -5.57 16 18 C -0.18 -6.61 10.18 30.62 0.31 -6.30 16 19 C -0.17 -6.52 9.98 30.62 0.31 -6.22 16 20 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 21 H 0.09 1.99 8.12 -2.39 -0.02 1.97 16 22 H 0.05 1.67 6.47 -2.39 -0.02 1.65 16 23 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 24 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 25 H 0.02 0.54 8.14 -2.39 -0.02 0.53 16 26 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 27 H 0.08 2.73 8.06 -2.39 -0.02 2.71 16 28 H 0.07 2.68 8.01 -2.38 -0.02 2.66 16 29 H 0.00 -0.11 6.47 -2.39 -0.02 -0.13 16 30 H 0.33 16.41 8.35 -89.69 -0.75 15.66 16 31 H 0.25 15.44 6.82 -92.70 -0.63 14.80 16 32 H 0.09 3.96 8.14 -2.39 -0.02 3.94 16 33 H 0.07 2.77 8.07 -2.38 -0.02 2.75 16 34 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -60.97 294.07 -0.49 -61.46 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.42 Total: 28.02 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 4.63 Total: -29.93 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -7.59 Total: -111.53 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.05 Total: 51.98 kcal Total: -60.97 -0.49 -61.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.700 kcal (2) G-P(sol) polarization free energy of solvation -60.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds