Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36943 * 120.00137 * 2 1 4 4 H 1.07993 * 120.00026 * 203.74188 * 3 2 1 5 5 C 1.38811 * 119.99548 * 23.74926 * 3 2 1 6 6 N 1.31621 * 120.00240 * 11.28321 * 5 3 2 7 7 Si 1.86802 * 119.99861 * 191.28845 * 5 3 2 8 8 H 1.48500 * 109.47505 * 89.99390 * 7 5 3 9 9 H 1.48504 * 109.47334 * 210.00045 * 7 5 3 10 10 H 1.48505 * 109.47021 * 329.99576 * 7 5 3 11 11 C 1.46500 * 120.00234 * 179.97438 * 2 1 3 12 12 H 1.09001 * 108.66398 * 181.70589 * 11 2 1 13 13 C 1.50542 * 108.78937 * 300.00611 * 11 2 1 14 14 C 1.54525 * 108.96092 * 212.70260 * 13 11 2 15 15 C 1.45877 * 111.67082 * 282.70580 * 14 13 11 16 16 C 1.53975 * 112.66907 * 61.49820 * 15 14 13 17 17 N 1.44301 * 108.31304 * 278.59515 * 16 15 14 18 18 C 1.46901 * 110.99939 * 221.34707 * 17 16 15 19 19 C 1.47942 * 113.64448 * 95.40029 * 17 16 15 20 20 H 1.09001 * 109.47312 * 274.73511 * 1 2 3 21 21 H 1.09007 * 109.47040 * 34.73737 * 1 2 3 22 22 H 1.09004 * 109.47199 * 154.72984 * 1 2 3 23 23 H 0.97005 * 119.99524 * 180.02562 * 6 5 3 24 24 H 1.08996 * 109.57465 * 92.82290 * 13 11 2 25 25 H 1.09006 * 109.56849 * 332.57479 * 13 11 2 26 26 H 1.08996 * 109.04059 * 43.27225 * 14 13 11 27 27 H 1.09005 * 109.03363 * 162.14382 * 14 13 11 28 28 H 1.08995 * 108.84160 * 182.32255 * 15 14 13 29 29 H 1.08996 * 108.84321 * 300.78277 * 15 14 13 30 30 H 1.09000 * 109.69763 * 38.29798 * 16 15 14 31 31 H 1.08998 * 109.69668 * 158.88707 * 16 15 14 32 32 H 1.09003 * 109.47313 * 63.95415 * 18 17 16 33 33 H 1.09000 * 109.47239 * 183.95230 * 18 17 16 34 34 H 1.08998 * 109.47605 * 303.95216 * 18 17 16 35 35 H 1.08990 * 108.71353 * 79.13281 * 19 17 16 36 36 H 1.08999 * 108.70609 * 197.27123 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1611 1.2255 -0.3765 5 6 1.5437 2.3371 0.4842 6 7 0.4072 2.2554 1.1429 7 14 2.3413 4.0024 0.2006 8 1 1.8467 4.5773 -1.0761 9 1 1.9957 4.9140 1.3209 10 1 3.8158 3.8397 0.1318 11 6 2.1975 -1.2687 0.0006 12 1 3.2658 -1.0546 0.0312 13 6 1.8227 -2.0444 1.2351 14 6 3.0436 -2.8704 1.6989 15 6 3.2319 -4.0611 0.8775 16 6 3.5005 -3.7256 -0.6011 17 7 2.2352 -3.4649 -1.2440 18 6 2.1887 -4.0727 -2.5805 19 6 1.8840 -2.0289 -1.3022 20 1 -0.3634 0.0848 1.0241 21 1 -0.3633 0.8446 -0.5856 22 1 -0.3634 -0.9293 -0.4387 23 1 -0.0164 3.0600 1.4809 24 1 0.9936 -2.7144 1.0077 25 1 1.5279 -1.3535 2.0250 26 1 3.9374 -2.2499 1.6359 27 1 2.8948 -3.1733 2.7354 28 1 4.0761 -4.6287 1.2687 29 1 2.3349 -4.6772 0.9397 30 1 4.1354 -2.8421 -0.6678 31 1 3.9920 -4.5692 -1.0858 32 1 2.2506 -5.1571 -2.4889 33 1 1.2532 -3.8024 -3.0703 34 1 3.0277 -3.7098 -3.1742 35 1 2.4378 -1.5663 -2.1190 36 1 0.8175 -1.9379 -1.5080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261035200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = 26.723441 kcal Electronic energy + Delta-G solvation = -15204.185549 eV Core-core repulsion = 12917.031439 eV Total energy + Delta-G solvation = -2287.154110 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.82021 -35.45352 -33.92883 -31.78950 -29.09992 -27.28816 -25.92418 -24.74349 -23.79673 -21.60133 -19.92135 -18.43247 -16.73559 -15.65227 -15.44877 -14.61539 -14.39965 -13.68096 -13.20564 -13.10902 -12.94860 -12.47204 -12.30183 -12.14027 -11.58968 -11.14513 -10.91532 -10.85882 -10.62096 -10.47581 -10.22682 -10.15164 -10.00757 -9.85761 -9.69836 -9.54914 -8.49989 -7.81430 -6.67604 -5.66064 -3.12902 3.40683 3.46649 3.48062 4.24795 4.56587 5.22498 5.26190 5.30538 5.46669 5.52661 5.65057 5.71646 5.76898 5.95069 6.00677 6.00862 6.11148 6.22919 6.31206 6.38805 6.49655 6.60688 6.80704 6.84186 6.89091 7.15868 7.22985 7.43510 7.48762 7.65054 7.83133 7.87009 8.47740 9.30789 9.94272 10.44048 11.38574 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041254 B = 0.008715 C = 0.008373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.555635 B = 3212.161795 C = 3343.098887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.598 5.598 3 C -0.252 4.252 4 H 0.065 0.935 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.180 3.820 12 H 0.054 0.946 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.108 4.108 16 C 0.063 3.937 17 N -0.553 5.553 18 C 0.033 3.967 19 C 0.049 3.951 20 H 0.030 0.970 21 H 0.038 0.962 22 H 0.000 1.000 23 H 0.251 0.749 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.024 0.976 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -11.301 -3.152 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.321 5.321 3 C -0.382 4.382 4 H 0.083 0.917 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.072 3.928 12 H 0.072 0.928 13 C -0.158 4.158 14 C -0.153 4.153 15 C -0.146 4.146 16 C -0.066 4.066 17 N -0.278 5.278 18 C -0.116 4.116 19 C -0.080 4.080 20 H 0.048 0.952 21 H 0.057 0.943 22 H 0.018 0.982 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.474 -11.341 -2.800 12.187 hybrid contribution 0.945 1.397 -0.653 1.809 sum 4.419 -9.944 -3.453 11.416 Atomic orbital electron populations 1.20744 0.82759 0.95257 0.99357 1.43995 1.01818 1.00126 1.86142 1.19207 0.98543 0.85771 1.34654 0.91714 1.25018 0.97876 0.98424 0.98338 1.70070 1.18824 1.27109 1.39240 0.86269 0.78781 0.84312 0.77255 1.21609 1.21744 1.20589 1.20117 0.95691 0.86240 0.90793 0.92790 1.21884 0.96794 0.98143 0.98964 1.20538 0.99260 0.96968 0.98579 1.20466 1.01194 0.98395 0.94517 1.21782 0.90087 0.99582 0.95119 1.60713 1.31987 1.15784 1.19282 1.22325 1.00474 0.99082 0.89688 1.23092 1.01000 0.84507 0.99371 0.95166 0.94315 0.98195 0.93846 0.92398 0.91383 0.92855 0.93050 0.93196 0.91575 0.93914 0.92345 0.92002 0.91887 0.96275 0.95715 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 8.20 59.84 0.49 4.62 16 2 N -0.60 -15.32 2.64 -174.26 -0.46 -15.78 16 3 C -0.25 -7.06 9.56 -15.06 -0.14 -7.20 16 4 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 5 C 0.00 0.04 5.13 -17.43 -0.09 -0.04 16 6 N -0.91 -26.84 10.66 55.49 0.59 -26.24 16 7 Si 0.90 22.21 29.57 -169.99 -5.03 17.18 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.18 3.83 2.04 -68.61 -0.14 3.69 16 12 H 0.05 1.19 6.36 -51.93 -0.33 0.86 16 13 C -0.12 -2.32 4.72 -27.16 -0.13 -2.45 16 14 C -0.12 -1.86 5.35 -29.30 -0.16 -2.02 16 15 C -0.11 -1.51 5.37 -29.59 -0.16 -1.67 16 16 C 0.06 0.91 5.41 -4.70 -0.03 0.88 16 17 N -0.55 -8.74 4.25 -242.84 -1.03 -9.77 16 18 C 0.03 0.43 9.27 60.07 0.56 0.98 16 19 C 0.05 0.92 4.93 -2.70 -0.01 0.91 16 20 H 0.03 0.82 7.35 -51.93 -0.38 0.44 16 21 H 0.04 1.04 7.32 -51.93 -0.38 0.66 16 22 H 0.00 -0.01 6.47 -51.93 -0.34 -0.34 16 23 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.06 1.12 7.78 -51.93 -0.40 0.72 16 25 H 0.07 1.53 7.96 -51.93 -0.41 1.11 16 26 H 0.05 0.88 7.59 -51.93 -0.39 0.49 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.04 0.67 6.80 -51.93 -0.35 0.31 16 31 H 0.06 0.72 7.61 -51.93 -0.40 0.33 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.80 8.06 -51.93 -0.42 0.39 16 34 H 0.02 0.24 8.13 -51.93 -0.42 -0.18 16 35 H 0.02 0.48 8.02 -51.93 -0.42 0.06 16 36 H 0.07 1.40 6.30 -51.93 -0.33 1.07 16 LS Contribution 272.83 15.07 4.11 4.11 Total: -1.00 -29.30 272.83 -7.83 -37.13 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -6.21 Total: -4.32 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 0.19 Total: -2.30 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.90 Total: -51.79 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.30 -7.83 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.849 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds