Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36943 * 120.00137 * 2 1 4 4 H 1.07993 * 120.00026 * 203.74188 * 3 2 1 5 5 C 1.38811 * 119.99548 * 23.74926 * 3 2 1 6 6 N 1.31621 * 120.00240 * 11.28321 * 5 3 2 7 7 Si 1.86802 * 119.99861 * 191.28845 * 5 3 2 8 8 H 1.48500 * 109.47505 * 89.99390 * 7 5 3 9 9 H 1.48504 * 109.47334 * 210.00045 * 7 5 3 10 10 H 1.48505 * 109.47021 * 329.99576 * 7 5 3 11 11 C 1.46500 * 120.00234 * 179.97438 * 2 1 3 12 12 H 1.09001 * 108.66398 * 181.70589 * 11 2 1 13 13 C 1.50542 * 108.78937 * 300.00611 * 11 2 1 14 14 C 1.54525 * 108.96092 * 212.70260 * 13 11 2 15 15 C 1.45877 * 111.67082 * 282.70580 * 14 13 11 16 16 C 1.53975 * 112.66907 * 61.49820 * 15 14 13 17 17 N 1.44301 * 108.31304 * 278.59515 * 16 15 14 18 18 C 1.46901 * 110.99939 * 221.34707 * 17 16 15 19 19 C 1.47942 * 113.64448 * 95.40029 * 17 16 15 20 20 H 1.09001 * 109.47312 * 274.73511 * 1 2 3 21 21 H 1.09007 * 109.47040 * 34.73737 * 1 2 3 22 22 H 1.09004 * 109.47199 * 154.72984 * 1 2 3 23 23 H 0.97005 * 119.99524 * 180.02562 * 6 5 3 24 24 H 1.08996 * 109.57465 * 92.82290 * 13 11 2 25 25 H 1.09006 * 109.56849 * 332.57479 * 13 11 2 26 26 H 1.08996 * 109.04059 * 43.27225 * 14 13 11 27 27 H 1.09005 * 109.03363 * 162.14382 * 14 13 11 28 28 H 1.08995 * 108.84160 * 182.32255 * 15 14 13 29 29 H 1.08996 * 108.84321 * 300.78277 * 15 14 13 30 30 H 1.09000 * 109.69763 * 38.29798 * 16 15 14 31 31 H 1.08998 * 109.69668 * 158.88707 * 16 15 14 32 32 H 1.09003 * 109.47313 * 63.95415 * 18 17 16 33 33 H 1.09000 * 109.47239 * 183.95230 * 18 17 16 34 34 H 1.08998 * 109.47605 * 303.95216 * 18 17 16 35 35 H 1.08990 * 108.71353 * 79.13281 * 19 17 16 36 36 H 1.08999 * 108.70609 * 197.27123 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1611 1.2255 -0.3765 5 6 1.5437 2.3371 0.4842 6 7 0.4072 2.2554 1.1429 7 14 2.3413 4.0024 0.2006 8 1 1.8467 4.5773 -1.0761 9 1 1.9957 4.9140 1.3209 10 1 3.8158 3.8397 0.1318 11 6 2.1975 -1.2687 0.0006 12 1 3.2658 -1.0546 0.0312 13 6 1.8227 -2.0444 1.2351 14 6 3.0436 -2.8704 1.6989 15 6 3.2319 -4.0611 0.8775 16 6 3.5005 -3.7256 -0.6011 17 7 2.2352 -3.4649 -1.2440 18 6 2.1887 -4.0727 -2.5805 19 6 1.8840 -2.0289 -1.3022 20 1 -0.3634 0.0848 1.0241 21 1 -0.3633 0.8446 -0.5856 22 1 -0.3634 -0.9293 -0.4387 23 1 -0.0164 3.0600 1.4809 24 1 0.9936 -2.7144 1.0077 25 1 1.5279 -1.3535 2.0250 26 1 3.9374 -2.2499 1.6359 27 1 2.8948 -3.1733 2.7354 28 1 4.0761 -4.6287 1.2687 29 1 2.3349 -4.6772 0.9397 30 1 4.1354 -2.8421 -0.6678 31 1 3.9920 -4.5692 -1.0858 32 1 2.2506 -5.1571 -2.4889 33 1 1.2532 -3.8024 -3.0703 34 1 3.0277 -3.7098 -3.1742 35 1 2.4378 -1.5663 -2.1190 36 1 0.8175 -1.9379 -1.5080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = 8.511698 kcal Electronic energy + Delta-G solvation = -15204.975269 eV Core-core repulsion = 12917.031439 eV Total energy + Delta-G solvation = -2287.943831 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.25083 -37.23695 -35.28917 -33.69997 -30.89332 -28.53393 -28.03067 -26.20839 -25.36397 -23.30940 -21.21198 -20.08232 -18.79040 -17.32373 -16.76436 -16.34614 -15.87995 -15.36987 -14.81458 -14.53027 -14.44369 -14.11314 -13.86585 -13.58693 -13.01880 -12.83242 -12.73578 -12.53870 -12.38213 -12.16787 -12.09492 -11.81898 -11.51484 -11.38503 -11.27660 -11.24284 -10.64802 -9.07851 -8.77379 -7.82303 -5.31908 1.44565 1.45759 1.54654 2.47946 3.00700 3.30892 3.70412 3.91460 4.08158 4.18023 4.30787 4.32702 4.56856 4.58772 4.65219 4.73222 4.81577 4.85426 4.95684 4.99275 5.04291 5.21508 5.26620 5.30164 5.39727 5.45005 5.53250 5.62843 5.66306 5.76113 6.17303 6.35762 6.42182 7.15645 7.87924 8.32482 9.20817 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041254 B = 0.008715 C = 0.008373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.555635 B = 3212.161795 C = 3343.098887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.614 5.614 3 C -0.264 4.264 4 H 0.065 0.935 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.969 3.031 8 H -0.286 1.286 9 H -0.293 1.293 10 H -0.269 1.269 11 C 0.180 3.820 12 H 0.042 0.958 13 C -0.109 4.109 14 C -0.108 4.108 15 C -0.104 4.104 16 C 0.060 3.940 17 N -0.557 5.557 18 C 0.031 3.969 19 C 0.065 3.935 20 H 0.003 0.997 21 H 0.012 0.988 22 H 0.027 0.973 23 H 0.248 0.752 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.015 0.985 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.192 -12.919 -3.791 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.337 5.337 3 C -0.394 4.394 4 H 0.083 0.917 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.213 1.213 9 H -0.220 1.220 10 H -0.194 1.194 11 C 0.073 3.927 12 H 0.061 0.939 13 C -0.149 4.149 14 C -0.146 4.146 15 C -0.142 4.142 16 C -0.069 4.069 17 N -0.282 5.282 18 C -0.116 4.116 19 C -0.064 4.064 20 H 0.022 0.978 21 H 0.031 0.969 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.772 -13.000 -3.454 14.272 hybrid contribution 0.570 1.827 -0.467 1.970 sum 5.342 -11.172 -3.921 12.990 Atomic orbital electron populations 1.20426 0.82971 0.95416 0.97413 1.44226 1.02008 1.01205 1.86309 1.19514 0.98704 0.87028 1.34140 0.91701 1.25802 0.98615 1.01867 0.98472 1.70240 1.20173 1.27646 1.40354 0.85236 0.78379 0.79809 0.76833 1.21283 1.21951 1.19404 1.20263 0.94479 0.85140 0.92829 0.93937 1.21705 0.98641 0.97613 0.96902 1.20492 0.96898 0.97294 0.99893 1.20430 1.02522 0.97317 0.93921 1.21901 0.89275 1.00105 0.95593 1.60733 1.33049 1.13205 1.21217 1.22426 1.00720 1.00333 0.88164 1.22716 1.00037 0.86539 0.97080 0.97831 0.96880 0.95475 0.94283 0.92192 0.95075 0.93537 0.91653 0.90207 0.91439 0.95397 0.89361 0.89443 0.91950 0.95748 0.96712 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.49 8.20 127.77 1.05 10.53 16 2 N -0.61 -32.12 2.64 -705.25 -1.86 -33.98 16 3 C -0.26 -15.01 9.56 84.03 0.80 -14.21 16 4 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 5 C -0.05 -3.03 5.13 84.86 0.44 -2.59 16 6 N -0.94 -56.94 10.66 21.65 0.23 -56.71 16 7 Si 0.97 46.16 29.57 68.60 2.03 48.19 16 8 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 9 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 C 0.18 7.67 2.04 44.55 0.09 7.77 16 12 H 0.04 1.89 6.36 -2.39 -0.02 1.88 16 13 C -0.11 -4.27 4.72 30.32 0.14 -4.13 16 14 C -0.11 -3.30 5.35 28.93 0.15 -3.14 16 15 C -0.10 -2.58 5.37 28.74 0.15 -2.42 16 16 C 0.06 1.54 5.41 87.12 0.47 2.01 16 17 N -0.56 -16.27 4.25 -922.22 -3.92 -20.20 16 18 C 0.03 0.72 9.27 127.69 1.18 1.90 16 19 C 0.07 2.41 4.93 86.46 0.43 2.84 16 20 H 0.00 0.19 7.35 -2.39 -0.02 0.18 16 21 H 0.01 0.70 7.32 -2.38 -0.02 0.69 16 22 H 0.03 1.23 6.47 -2.39 -0.02 1.21 16 23 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 24 H 0.06 2.29 7.78 -2.39 -0.02 2.27 16 25 H 0.03 1.42 7.96 -2.38 -0.02 1.40 16 26 H 0.05 1.48 7.59 -2.39 -0.02 1.46 16 27 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 30 H 0.03 0.81 6.80 -2.39 -0.02 0.79 16 31 H 0.09 1.79 7.61 -2.39 -0.02 1.77 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.44 8.06 -2.39 -0.02 1.42 16 34 H 0.02 0.54 8.13 -2.39 -0.02 0.52 16 35 H 0.01 0.56 8.02 -2.39 -0.02 0.54 16 36 H 0.06 2.29 6.30 -2.39 -0.02 2.28 16 Total: -1.00 -63.57 272.83 2.41 -61.15 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.02 Total: 2.99 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.91 Total: -1.45 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -5.55 Total: -110.88 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -63.57 2.41 -61.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.667 kcal (2) G-P(sol) polarization free energy of solvation -63.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds