Wall clock time and date at job start Mon Mar 30 2020 02:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 120.00271 * 2 1 4 4 H 1.07997 * 120.00205 * 160.04681 * 3 2 1 5 5 C 1.38812 * 119.99886 * 340.05225 * 3 2 1 6 6 N 1.31621 * 119.99911 * 344.15744 * 5 3 2 7 7 Si 1.86803 * 120.00088 * 164.16243 * 5 3 2 8 8 H 1.48502 * 109.46861 * 265.41493 * 7 5 3 9 9 H 1.48500 * 109.47081 * 145.41747 * 7 5 3 10 10 H 1.48491 * 109.47182 * 25.41441 * 7 5 3 11 11 C 1.46502 * 119.99809 * 180.02562 * 2 1 3 12 12 H 1.09003 * 109.04627 * 180.02562 * 11 2 1 13 13 C 1.54501 * 109.05969 * 61.00544 * 11 2 1 14 14 C 1.50519 * 108.82781 * 162.19933 * 13 11 2 15 15 C 1.54296 * 112.96929 * 92.24576 * 14 13 11 16 16 C 1.54070 * 112.28541 * 318.29936 * 15 14 13 17 17 N 1.44270 * 111.98171 * 318.91172 * 16 15 14 18 18 C 1.46896 * 111.00185 * 219.31158 * 17 16 15 19 19 C 1.45868 * 109.05588 * 298.98810 * 11 2 1 20 20 H 1.08996 * 109.46962 * 85.42946 * 1 2 3 21 21 H 1.09001 * 109.46899 * 205.43043 * 1 2 3 22 22 H 1.08996 * 109.47041 * 325.43133 * 1 2 3 23 23 H 0.96999 * 119.99853 * 180.02562 * 6 5 3 24 24 H 1.08999 * 109.57694 * 282.08004 * 13 11 2 25 25 H 1.09000 * 109.57436 * 42.45890 * 13 11 2 26 26 H 1.09004 * 108.80547 * 331.34592 * 14 13 11 27 27 H 1.08998 * 108.70508 * 213.07654 * 14 13 11 28 28 H 1.08997 * 108.91645 * 197.57380 * 15 14 13 29 29 H 1.08999 * 108.84524 * 78.97146 * 15 14 13 30 30 H 1.09006 * 108.97440 * 198.26925 * 16 15 14 31 31 H 1.08998 * 108.91081 * 79.51690 * 16 15 14 32 32 H 1.09000 * 109.47263 * 298.02226 * 18 17 16 33 33 H 1.09001 * 109.46851 * 58.02169 * 18 17 16 34 34 H 1.08999 * 109.47271 * 178.01986 * 18 17 16 35 35 H 1.08995 * 108.79588 * 302.75946 * 19 11 2 36 36 H 1.09003 * 108.79176 * 61.09417 * 19 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1811 1.2139 0.3192 5 6 1.5182 2.3519 -0.4101 6 7 0.3895 2.2870 -1.0841 7 14 2.2702 4.0134 -0.0056 8 1 1.6680 4.5376 1.2465 9 1 2.0040 4.9611 -1.1175 10 1 3.7362 3.8622 0.1757 11 6 2.1975 -1.2688 -0.0006 12 1 3.2677 -1.0617 0.0000 13 6 1.8367 -2.0590 -1.2782 14 6 2.8802 -3.1201 -1.5039 15 6 2.5114 -4.4736 -0.8614 16 6 1.9005 -4.3064 0.5431 17 7 2.5857 -3.2971 1.3134 18 6 2.7217 -3.7083 2.7171 19 6 1.8569 -2.0158 1.2051 20 1 -0.3633 0.0819 -1.0244 21 1 -0.3633 -0.9281 0.4413 22 1 -0.3633 0.8462 0.5831 23 1 -0.0516 3.1018 -1.3710 24 1 0.8597 -2.5263 -1.1550 25 1 1.8147 -1.3822 -2.1323 26 1 3.8258 -2.7782 -1.0833 27 1 3.0059 -3.2640 -2.5770 28 1 3.4104 -5.0852 -0.7852 29 1 1.7912 -4.9828 -1.5017 30 1 1.9612 -5.2578 1.0716 31 1 0.8526 -4.0241 0.4412 32 1 1.7322 -3.8307 3.1574 33 1 3.2616 -4.6539 2.7680 34 1 3.2725 -2.9455 3.2674 35 1 2.0919 -1.4036 2.0757 36 1 0.7866 -2.2217 1.2000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035203.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:39 Heat of formation + Delta-G solvation = 11.500642 kcal Electronic energy + Delta-G solvation = -15202.445890 eV Core-core repulsion = 12914.631670 eV Total energy + Delta-G solvation = -2287.814220 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41833 -37.26351 -34.98375 -33.70994 -31.07600 -28.69318 -28.04580 -25.80500 -25.59988 -23.51442 -20.77748 -20.40201 -18.83345 -17.26397 -16.72613 -16.20779 -15.84101 -15.41459 -15.06529 -14.72534 -14.33482 -14.13649 -13.72405 -13.41397 -13.03615 -12.99117 -12.67379 -12.55151 -12.29847 -12.17182 -12.03906 -11.88665 -11.55653 -11.50394 -11.27785 -11.01793 -10.62650 -9.24304 -8.78830 -7.81784 -5.26418 1.46203 1.47145 1.56739 2.49326 2.98140 3.31213 3.79048 3.91253 4.07447 4.17083 4.36052 4.38968 4.46811 4.54472 4.60658 4.77489 4.80554 4.86768 4.91127 5.01782 5.05148 5.12974 5.22522 5.32017 5.33840 5.46064 5.56487 5.60063 5.67173 5.72834 6.11475 6.34632 6.35835 7.16185 7.89682 8.32633 9.22244 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043599 B = 0.008646 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.058760 B = 3237.665289 C = 3439.780708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.615 5.615 3 C -0.259 4.259 4 H 0.069 0.931 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.968 3.032 8 H -0.287 1.287 9 H -0.295 1.295 10 H -0.268 1.268 11 C 0.181 3.819 12 H 0.050 0.950 13 C -0.114 4.114 14 C -0.102 4.102 15 C -0.101 4.101 16 C 0.052 3.948 17 N -0.541 5.541 18 C 0.029 3.971 19 C 0.064 3.936 20 H 0.001 0.999 21 H 0.025 0.975 22 H 0.015 0.985 23 H 0.247 0.753 24 H 0.048 0.952 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 -13.736 4.152 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.339 5.339 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.796 3.204 8 H -0.214 1.214 9 H -0.222 1.222 10 H -0.193 1.193 11 C 0.074 3.926 12 H 0.068 0.932 13 C -0.154 4.154 14 C -0.140 4.140 15 C -0.139 4.139 16 C -0.077 4.077 17 N -0.265 5.265 18 C -0.119 4.119 19 C -0.065 4.065 20 H 0.019 0.981 21 H 0.043 0.957 22 H 0.034 0.966 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.750 -13.558 3.920 14.603 hybrid contribution -0.831 1.311 0.247 1.571 sum 2.919 -12.248 4.168 13.263 Atomic orbital electron populations 1.20420 0.83057 0.95415 0.97300 1.44282 1.01953 1.01379 1.86236 1.19577 0.96835 0.86135 1.36355 0.91325 1.25709 0.98751 1.01545 0.99079 1.70265 1.20615 1.26980 1.40810 0.85228 0.78371 0.79885 0.76873 1.21442 1.22170 1.19290 1.19386 0.95159 0.84887 0.93169 0.93219 1.21700 0.98865 0.96927 0.97900 1.21104 0.98347 0.94881 0.99648 1.21908 1.01216 0.96108 0.94689 1.21999 0.95363 0.95105 0.95204 1.61488 1.50979 1.02618 1.11449 1.22497 1.00191 1.01941 0.87277 1.21299 0.95302 0.91028 0.98831 0.98107 0.95708 0.96631 0.94375 0.93304 0.95108 0.92821 0.92534 0.90785 0.91189 0.89844 0.95362 0.95576 0.89381 0.91812 0.92989 0.95508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.45 8.33 127.77 1.06 10.52 16 2 N -0.61 -32.07 2.76 -712.26 -1.96 -34.03 16 3 C -0.26 -14.75 9.61 84.03 0.81 -13.95 16 4 H 0.07 3.83 7.80 -2.91 -0.02 3.81 16 5 C -0.06 -3.25 5.04 84.86 0.43 -2.82 16 6 N -0.94 -57.21 10.70 21.65 0.23 -56.98 16 7 Si 0.97 46.36 29.58 68.60 2.03 48.39 16 8 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 9 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 C 0.18 7.73 2.32 43.31 0.10 7.83 16 12 H 0.05 2.26 7.26 -2.39 -0.02 2.25 16 13 C -0.11 -4.43 4.69 30.30 0.14 -4.28 16 14 C -0.10 -3.11 5.42 30.23 0.16 -2.95 16 15 C -0.10 -2.43 6.14 31.40 0.19 -2.23 16 16 C 0.05 1.30 5.18 87.16 0.45 1.75 16 17 N -0.54 -15.72 4.48 -938.14 -4.21 -19.93 16 18 C 0.03 0.66 9.19 127.69 1.17 1.83 16 19 C 0.06 2.34 4.21 83.94 0.35 2.70 16 20 H 0.00 0.04 7.44 -2.39 -0.02 0.02 16 21 H 0.02 1.10 6.39 -2.39 -0.02 1.09 16 22 H 0.01 0.84 7.17 -2.39 -0.02 0.83 16 23 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.05 1.83 7.14 -2.39 -0.02 1.82 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.75 7.38 -2.39 -0.02 1.73 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.64 7.49 -2.38 -0.02 1.63 16 31 H 0.03 0.78 6.50 -2.39 -0.02 0.76 16 32 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 1.59 8.01 -2.39 -0.02 1.57 16 34 H 0.06 1.50 8.05 -2.39 -0.02 1.48 16 35 H 0.05 2.02 7.74 -2.39 -0.02 2.00 16 36 H 0.03 1.00 5.62 -2.39 -0.01 0.99 16 Total: -1.00 -63.72 271.98 1.99 -61.73 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.02 Total: 2.42 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 4.88 Total: -1.61 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -5.94 Total: -110.94 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -63.72 1.99 -61.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035203.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.231 kcal (2) G-P(sol) polarization free energy of solvation -63.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds