Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46878 * 2 1 4 4 C 1.36937 * 120.00002 * 85.04173 * 3 2 1 5 5 H 1.07998 * 119.99473 * 209.69087 * 4 3 2 6 6 C 1.38810 * 120.00048 * 29.69270 * 4 3 2 7 7 N 1.31619 * 120.00001 * 40.70919 * 6 4 3 8 8 Si 1.86800 * 119.99568 * 220.70567 * 6 4 3 9 9 H 1.48508 * 109.46942 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47514 * 300.00082 * 8 6 4 11 11 H 1.48496 * 109.47181 * 60.00488 * 8 6 4 12 12 C 1.46506 * 119.99646 * 265.03663 * 3 2 1 13 13 H 1.08992 * 109.50267 * 0.02562 * 12 3 2 14 14 C 1.53119 * 109.49839 * 239.92569 * 12 3 2 15 15 C 1.53125 * 109.15613 * 182.40572 * 14 12 3 16 16 C 1.53039 * 109.27810 * 57.65569 * 15 14 12 17 17 N 1.46846 * 109.52086 * 300.81707 * 16 15 14 18 18 C 1.46899 * 111.00337 * 185.83992 * 17 16 15 19 19 C 1.46855 * 111.23178 * 61.72598 * 17 16 15 20 20 H 1.09000 * 109.47150 * 60.00241 * 1 2 3 21 21 H 1.09003 * 109.47279 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47359 * 300.00315 * 1 2 3 23 23 H 1.08991 * 109.46990 * 239.99749 * 2 1 3 24 24 H 1.09000 * 109.47150 * 119.99759 * 2 1 3 25 25 H 0.96995 * 119.99840 * 5.83938 * 7 6 4 26 26 H 1.09000 * 109.52364 * 302.30798 * 14 12 3 27 27 H 1.08992 * 109.52772 * 62.50268 * 14 12 3 28 28 H 1.08996 * 109.50252 * 177.59454 * 15 14 12 29 29 H 1.08997 * 109.50385 * 297.71082 * 15 14 12 30 30 H 1.08998 * 109.46466 * 60.83624 * 16 15 14 31 31 H 1.08997 * 109.46389 * 180.81700 * 16 15 14 32 32 H 1.08999 * 109.47103 * 63.95583 * 18 17 16 33 33 H 1.08997 * 109.47508 * 183.95493 * 18 17 16 34 34 H 1.09003 * 109.47390 * 303.96062 * 18 17 16 35 35 H 1.08995 * 109.49532 * 178.28015 * 19 17 16 36 36 H 1.09000 * 109.42747 * 58.31487 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1498 2.0609 1.1815 5 1 2.0342 3.1345 1.2025 6 6 2.4319 1.3701 2.3519 7 7 3.2990 0.3800 2.3391 8 14 1.5808 1.8458 3.9453 9 1 2.0524 0.9618 5.0415 10 1 1.9017 3.2575 4.2757 11 1 0.1120 1.6964 3.7856 12 6 2.3659 2.0352 -1.2641 13 1 2.1971 1.3441 -2.0898 14 6 3.8397 2.4497 -1.2367 15 6 4.1790 3.1853 -2.5361 16 6 3.2551 4.3959 -2.6874 17 7 1.8572 3.9467 -2.7089 18 6 0.9488 5.0661 -2.9915 19 6 1.4939 3.2786 -1.4527 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8034 0.1875 1.5333 26 1 4.0168 3.1097 -0.3875 27 1 4.4660 1.5623 -1.1463 28 1 5.2157 3.5204 -2.5045 29 1 4.0390 2.5127 -3.3823 30 1 3.4056 5.0748 -1.8480 31 1 3.4844 4.9136 -3.6188 32 1 1.1463 5.4506 -3.9921 33 1 -0.0832 4.7204 -2.9323 34 1 1.1093 5.8579 -2.2598 35 1 0.4449 2.9847 -1.4871 36 1 1.6519 3.9630 -0.6191 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = -2.028339 kcal Electronic energy + Delta-G solvation = -15269.643221 eV Core-core repulsion = 12981.242340 eV Total energy + Delta-G solvation = -2288.400881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13692 -37.50748 -34.24325 -33.32063 -31.89947 -29.19570 -27.57470 -26.05053 -23.73053 -23.66615 -21.98501 -20.82619 -18.77925 -17.03956 -16.43087 -15.98437 -15.71841 -15.51832 -15.28012 -14.91720 -14.40628 -14.07190 -13.93890 -13.48313 -13.16957 -12.91847 -12.65695 -12.53718 -12.47102 -12.28106 -11.95562 -11.92811 -11.71816 -11.38708 -11.34115 -11.18709 -10.25276 -9.31134 -8.85543 -8.23072 -5.28137 1.55991 1.61480 1.81286 2.63571 2.93680 3.14292 3.60835 4.00057 4.03574 4.14228 4.29417 4.39426 4.44773 4.57398 4.63075 4.64854 4.75217 4.80493 4.85476 4.88227 4.96531 4.99582 5.03605 5.06519 5.13497 5.35247 5.42324 5.53402 5.56335 5.95838 6.12508 6.18505 6.41150 7.14369 7.87131 8.31891 8.93300 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.010083 C = 0.009940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.030370 B = 2776.208760 C = 2816.199350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 N -0.601 5.601 4 C -0.352 4.352 5 H 0.034 0.966 6 C -0.056 4.056 7 N -0.908 5.908 8 Si 1.084 2.916 9 H -0.292 1.292 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.176 3.824 13 H 0.060 0.940 14 C -0.116 4.116 15 C -0.106 4.106 16 C 0.059 3.941 17 N -0.548 5.548 18 C 0.027 3.973 19 C 0.069 3.931 20 H 0.048 0.952 21 H 0.061 0.939 22 H 0.032 0.968 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.254 0.746 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.017 0.983 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.018 0.982 35 H 0.059 0.941 36 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 5.846 -10.232 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.482 4.482 5 H 0.051 0.949 6 C -0.256 4.256 7 N -0.547 5.547 8 Si 0.911 3.089 9 H -0.218 1.218 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.070 3.930 13 H 0.078 0.922 14 C -0.155 4.155 15 C -0.144 4.144 16 C -0.069 4.069 17 N -0.273 5.273 18 C -0.121 4.121 19 C -0.061 4.061 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -2.938 5.100 -9.014 10.765 hybrid contribution 0.399 0.953 -0.484 1.141 sum -2.539 6.052 -9.498 11.545 Atomic orbital electron populations 1.22054 0.97675 1.00383 1.00413 1.20877 0.93388 0.85773 0.99148 1.44235 1.74243 1.11915 1.01909 1.19539 1.48753 0.92398 0.87477 0.94872 1.26629 0.96988 0.98686 1.03342 1.70906 1.18856 1.35754 1.29141 0.83276 0.76297 0.75653 0.73691 1.21834 1.20770 1.20999 1.20446 0.92077 0.92916 0.87599 0.92219 1.21843 0.97721 0.98832 0.97145 1.21550 0.98938 0.97028 0.96905 1.22116 0.87692 0.96174 1.00879 1.61984 1.03602 1.28326 1.33430 1.22399 0.96780 0.91503 1.01429 1.22246 0.99079 0.96057 0.88681 0.93303 0.92048 0.94885 0.93993 0.94307 0.93658 0.95096 0.94484 0.90378 0.90712 0.96508 0.88335 0.89242 0.91418 0.96316 0.92260 0.97583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.88 10.21 71.98 0.74 -5.15 16 2 C 0.13 6.25 5.89 86.38 0.51 6.76 16 3 N -0.60 -29.71 2.30 -677.77 -1.56 -31.27 16 4 C -0.35 -19.50 7.97 84.03 0.67 -18.83 16 5 H 0.03 1.94 6.93 -2.91 -0.02 1.92 16 6 C -0.06 -3.17 4.52 84.86 0.38 -2.79 16 7 N -0.91 -54.54 12.21 21.65 0.26 -54.27 16 8 Si 1.08 51.37 30.06 68.60 2.06 53.43 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 C 0.18 7.48 2.79 45.04 0.13 7.60 16 13 H 0.06 2.45 7.73 -2.39 -0.02 2.43 16 14 C -0.12 -4.71 5.29 30.68 0.16 -4.55 16 15 C -0.11 -3.22 6.09 30.65 0.19 -3.03 16 16 C 0.06 1.70 5.46 86.33 0.47 2.17 16 17 N -0.55 -17.22 4.91 -922.60 -4.53 -21.75 16 18 C 0.03 0.67 9.62 127.69 1.23 1.90 16 19 C 0.07 2.69 4.73 86.32 0.41 3.10 16 20 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.04 1.79 7.82 -2.39 -0.02 1.77 16 24 H 0.04 2.07 5.70 -2.39 -0.01 2.05 16 25 H 0.25 15.66 8.11 -92.71 -0.75 14.90 16 26 H 0.03 1.43 7.59 -2.39 -0.02 1.41 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.02 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.10 2.22 8.12 -2.39 -0.02 2.20 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.65 8.02 -2.39 -0.02 1.63 16 34 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 36 H 0.01 0.26 6.93 -2.39 -0.02 0.25 16 Total: -1.00 -61.58 281.64 2.15 -59.43 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.03 Total: 7.25 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 4.88 Total: -12.81 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -5.83 Total: -107.29 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.06 Total: 53.43 kcal Total: -61.58 2.15 -59.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.402 kcal (2) G-P(sol) polarization free energy of solvation -61.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds