Wall clock time and date at job start Mon Mar 30 2020 02:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99924 * 2 1 4 4 C 1.46892 * 111.00257 * 123.95394 * 2 1 3 5 5 C 1.50699 * 109.50464 * 295.23705 * 4 2 1 6 6 H 1.08002 * 119.99919 * 263.54165 * 5 4 2 7 7 C 1.37877 * 120.00082 * 83.54134 * 5 4 2 8 8 N 1.31508 * 120.00185 * 348.43648 * 7 5 4 9 9 Si 1.86804 * 119.99889 * 168.43740 * 7 5 4 10 10 H 1.48505 * 109.47195 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47200 * 120.00147 * 9 7 5 12 12 H 1.48501 * 109.46870 * 240.00241 * 9 7 5 13 13 C 1.53121 * 109.50566 * 175.15409 * 4 2 1 14 14 C 1.53123 * 109.16199 * 182.36242 * 13 4 2 15 15 C 1.53037 * 109.27537 * 57.65897 * 14 13 4 16 16 N 1.46850 * 109.51456 * 300.82587 * 15 14 13 17 17 C 1.46894 * 110.99931 * 185.83440 * 16 15 14 18 18 C 1.46829 * 111.21167 * 61.74857 * 16 15 14 19 19 H 1.08995 * 109.47155 * 302.53146 * 1 2 3 20 20 H 1.09006 * 109.47043 * 62.53565 * 1 2 3 21 21 H 1.09000 * 109.46553 * 182.53188 * 1 2 3 22 22 H 1.09001 * 109.47677 * 183.95600 * 3 2 1 23 23 H 1.09003 * 109.47270 * 303.95544 * 3 2 1 24 24 H 1.09007 * 109.47054 * 63.95210 * 3 2 1 25 25 H 0.96995 * 120.00348 * 179.97438 * 8 7 5 26 26 H 1.09003 * 109.52103 * 62.46453 * 13 4 2 27 27 H 1.09000 * 109.57500 * 302.30625 * 13 4 2 28 28 H 1.08992 * 109.50299 * 297.71719 * 14 13 4 29 29 H 1.09000 * 109.53679 * 177.61690 * 14 13 4 30 30 H 1.09006 * 109.46269 * 60.83063 * 15 14 13 31 31 H 1.09000 * 109.46196 * 180.81379 * 15 14 13 32 32 H 1.09007 * 109.47460 * 56.04399 * 17 16 15 33 33 H 1.09004 * 109.47223 * 176.03997 * 17 16 15 34 34 H 1.08996 * 109.47357 * 296.04325 * 17 16 15 35 35 H 1.08994 * 109.46569 * 178.24052 * 18 16 15 36 36 H 1.08992 * 109.45605 * 58.25736 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6104 -0.0837 2.4249 6 1 2.3068 0.5827 2.9121 7 6 0.3691 -0.3102 2.9806 8 7 -0.5587 -0.9317 2.2862 9 14 0.0053 0.2658 4.7200 10 1 1.2072 0.9328 5.2821 11 1 -1.1283 1.2247 4.6970 12 1 -0.3518 -0.9028 5.5638 13 6 3.5214 -0.8458 1.0378 14 6 4.0569 -1.6950 2.1939 15 6 3.4147 -3.0831 2.1409 16 7 1.9554 -2.9525 2.2404 17 6 1.3140 -4.2709 2.3320 18 6 1.4130 -2.1810 1.1151 19 1 -0.3633 0.5526 0.8664 20 1 -0.3633 0.4740 -0.9119 21 1 -0.3632 -1.0267 0.0454 22 1 3.0828 1.3434 -0.0709 23 1 1.5898 1.9164 -0.8524 24 1 1.7044 1.8724 0.9233 25 1 -1.4319 -1.0914 2.6773 26 1 3.9433 0.1576 1.0970 27 1 3.8019 -1.3034 0.0891 28 1 3.8108 -1.2161 3.1416 29 1 5.1390 -1.7910 2.1049 30 1 3.6726 -3.5668 1.1987 31 1 3.7829 -3.6855 2.9712 32 1 1.7307 -4.8199 3.1765 33 1 0.2409 -4.1437 2.4753 34 1 1.4943 -4.8274 1.4123 35 1 0.3277 -2.1283 1.2004 36 1 1.6805 -2.6690 0.1779 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126480.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:29 Heat of formation + Delta-G solvation = 17.031470 kcal Electronic energy + Delta-G solvation = -16061.062455 eV Core-core repulsion = 13773.488069 eV Total energy + Delta-G solvation = -2287.574386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.37277 -37.14041 -34.16799 -33.55453 -30.37407 -28.50363 -26.98416 -26.79709 -24.53284 -23.14404 -21.71378 -20.28405 -17.63042 -17.00720 -16.52820 -15.72556 -15.42807 -15.24851 -14.96166 -14.59256 -14.32349 -14.06361 -13.47270 -13.27781 -12.95132 -12.86125 -12.56652 -12.44064 -12.29296 -12.13642 -11.81514 -11.75859 -11.48741 -11.27024 -10.98761 -10.54542 -10.03685 -8.75703 -8.58085 -7.79698 -5.96456 1.41860 1.48464 1.54305 2.52713 3.24736 3.43368 3.95919 4.27761 4.33796 4.41108 4.63694 4.69745 4.71415 4.76942 4.91094 4.97606 4.99235 5.06599 5.09352 5.11553 5.21819 5.27319 5.34920 5.48022 5.59221 5.66323 5.75575 5.97644 6.16382 6.43941 6.58177 6.70493 6.81762 7.00090 7.09640 7.68017 9.04342 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.018901 C = 0.014402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.203843 B = 1481.070729 C = 1943.662813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.557 5.557 3 C 0.044 3.956 4 C 0.220 3.780 5 C -0.508 4.508 6 H 0.031 0.969 7 C 0.054 3.946 8 N -0.879 5.879 9 Si 0.931 3.069 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.097 4.097 14 C -0.099 4.099 15 C 0.061 3.939 16 N -0.535 5.535 17 C 0.039 3.961 18 C 0.066 3.934 19 H 0.031 0.969 20 H 0.021 0.979 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.010 0.990 25 H 0.253 0.747 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.017 0.983 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.126 0.874 36 H -0.029 1.029 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -2.608 -1.222 5.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.281 5.281 3 C -0.105 4.105 4 C 0.133 3.867 5 C -0.547 4.547 6 H 0.049 0.951 7 C -0.146 4.146 8 N -0.520 5.520 9 Si 0.760 3.240 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.135 4.135 14 C -0.138 4.138 15 C -0.067 4.067 16 N -0.259 5.259 17 C -0.109 4.109 18 C -0.062 4.062 19 H 0.049 0.951 20 H 0.039 0.961 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.142 0.858 36 H -0.011 1.011 Dipole moment (debyes) X Y Z Total from point charges 4.144 -2.644 -1.207 5.062 hybrid contribution -0.495 0.295 0.999 1.154 sum 3.649 -2.349 -0.208 4.344 Atomic orbital electron populations 1.22198 0.87784 1.01323 0.96662 1.62593 1.08272 1.12790 1.44463 1.22041 0.99304 0.90469 0.98722 1.18744 0.90240 0.90651 0.87104 1.21324 0.99146 1.25713 1.08537 0.95100 1.25074 0.95986 0.95108 0.98448 1.69922 1.03830 1.43034 1.35175 0.85962 0.77024 0.77347 0.83630 1.20805 1.21849 1.21320 1.21535 0.96755 0.98496 0.96728 1.21405 0.98317 0.95064 0.98975 1.22060 0.88640 0.97110 0.98920 1.61678 1.03871 1.15200 1.45144 1.22195 0.99392 0.89790 0.99530 1.22498 1.04993 0.92496 0.86169 0.95087 0.96073 0.92415 0.92472 0.92657 0.97095 0.93590 0.93578 0.94279 0.92664 0.90783 0.96451 0.90613 0.90963 0.93096 0.96641 0.85758 1.01129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.23 7.75 127.69 0.99 4.22 16 2 N -0.56 -25.78 4.84 -902.64 -4.37 -30.14 16 3 C 0.04 1.81 8.93 127.69 1.14 2.95 16 4 C 0.22 10.41 0.42 2.84 0.00 10.41 16 5 C -0.51 -26.15 4.87 25.60 0.12 -26.02 16 6 H 0.03 1.67 7.81 -2.91 -0.02 1.65 16 7 C 0.05 2.78 4.28 84.66 0.36 3.14 16 8 N -0.88 -45.20 6.93 21.45 0.15 -45.06 16 9 Si 0.93 43.35 29.55 68.60 2.03 45.38 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 C -0.10 -4.06 4.49 30.68 0.14 -3.93 16 14 C -0.10 -3.77 5.84 30.65 0.18 -3.59 16 15 C 0.06 2.26 5.46 86.33 0.47 2.73 16 16 N -0.53 -23.12 4.45 -922.64 -4.10 -27.22 16 17 C 0.04 1.46 9.59 127.69 1.22 2.68 16 18 C 0.07 3.15 3.25 86.33 0.28 3.43 16 19 H 0.03 1.60 5.62 -2.39 -0.01 1.58 16 20 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 21 H 0.06 2.85 5.41 -2.39 -0.01 2.84 16 22 H 0.06 2.20 6.38 -2.39 -0.02 2.19 16 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.01 0.48 7.07 -2.38 -0.02 0.46 16 25 H 0.25 12.76 8.31 -92.71 -0.77 11.99 16 26 H 0.05 1.90 6.56 -2.39 -0.02 1.88 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 2.33 7.34 -2.39 -0.02 2.31 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.08 2.47 8.09 -2.39 -0.02 2.45 16 32 H 0.07 2.31 8.10 -2.38 -0.02 2.29 16 33 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.13 6.47 3.63 -2.39 -0.01 6.46 16 36 H -0.03 -1.43 8.14 -2.39 -0.02 -1.45 16 Total: -1.00 -54.26 261.43 -0.35 -54.61 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.03 Total: 6.39 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.91 Total: -3.96 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -8.32 Total: -102.42 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -54.26 -0.35 -54.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126480.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.643 kcal (2) G-P(sol) polarization free energy of solvation -54.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds