Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46902 * 110.99856 * 2 1 4 4 C 1.46899 * 110.99957 * 123.95672 * 2 1 3 5 5 C 1.53002 * 109.47006 * 66.04517 * 4 2 1 6 6 C 1.52999 * 109.46667 * 179.97438 * 5 4 2 7 7 H 1.08996 * 110.06893 * 305.24141 * 6 5 4 8 8 N 1.47902 * 109.92043 * 66.45568 * 6 5 4 9 9 C 1.48536 * 105.82263 * 144.67991 * 8 6 5 10 10 C 1.54943 * 103.22583 * 320.79540 * 9 8 6 11 11 C 1.54001 * 109.91277 * 184.04403 * 6 5 4 12 12 H 1.08999 * 110.30690 * 120.50856 * 11 6 5 13 13 C 1.50696 * 110.31097 * 358.33969 * 11 6 5 14 14 H 1.07998 * 119.99803 * 2.82599 * 13 11 6 15 15 C 1.37874 * 119.99840 * 182.83253 * 13 11 6 16 16 N 1.31512 * 120.00345 * 359.97438 * 15 13 11 17 17 Si 1.86807 * 119.99739 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46957 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47143 * 119.99921 * 17 15 13 20 20 H 1.48499 * 109.47190 * 239.99831 * 17 15 13 21 21 H 1.09004 * 109.46761 * 296.04295 * 1 2 3 22 22 H 1.08997 * 109.47124 * 56.04295 * 1 2 3 23 23 H 1.08996 * 109.47068 * 176.04249 * 1 2 3 24 24 H 1.08993 * 109.46781 * 183.95330 * 3 2 1 25 25 H 1.08992 * 109.47284 * 303.95678 * 3 2 1 26 26 H 1.08997 * 109.47039 * 63.95758 * 3 2 1 27 27 H 1.08999 * 109.47238 * 306.04624 * 4 2 1 28 28 H 1.09000 * 109.47236 * 186.04435 * 4 2 1 29 29 H 1.08999 * 109.47035 * 59.99983 * 5 4 2 30 30 H 1.09000 * 109.47056 * 300.00028 * 5 4 2 31 31 H 1.00901 * 110.99744 * 24.16846 * 8 6 5 32 32 H 1.09003 * 110.66577 * 79.22623 * 9 8 6 33 33 H 1.08991 * 110.66751 * 202.35915 * 9 8 6 34 34 H 1.08997 * 110.72342 * 155.77228 * 10 9 8 35 35 H 1.09002 * 110.72210 * 278.87929 * 10 9 8 36 36 H 0.97005 * 119.99993 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 6 2.1804 -3.0405 2.1547 7 1 3.2517 -2.8683 2.2574 8 7 1.4844 -2.6411 3.3971 9 6 1.3689 -3.8776 4.2120 10 6 1.0474 -4.9676 3.1588 11 6 1.9080 -4.5420 1.9470 12 1 2.8452 -5.0983 1.9347 13 6 1.1500 -4.7635 0.6635 14 1 0.9206 -3.9266 0.0206 15 6 0.7494 -6.0345 0.3101 16 7 1.0292 -7.0537 1.0928 17 14 -0.1908 -6.3090 -1.2806 18 1 -0.3775 -5.0100 -1.9756 19 1 0.5749 -7.2333 -2.1550 20 1 -1.5177 -6.9018 -0.9753 21 1 -0.3633 0.4512 0.9234 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0828 1.3432 -0.0708 25 1 1.5898 1.9163 -0.8523 26 1 1.7045 1.8723 0.9233 27 1 1.5612 -0.3874 2.0628 28 1 3.0798 -0.6612 1.1756 29 1 2.0658 -2.6213 0.0450 30 1 0.5472 -2.3475 0.9322 31 1 0.5743 -2.2557 3.1939 32 1 2.3105 -4.0955 4.7160 33 1 0.5568 -3.7884 4.9335 34 1 1.3475 -5.9518 3.5183 35 1 -0.0125 -4.9579 2.9049 36 1 0.7476 -7.9480 0.8439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261128188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = -16.484972 kcal Electronic energy + Delta-G solvation = -14904.698033 eV Core-core repulsion = 12615.670266 eV Total energy + Delta-G solvation = -2289.027768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.02133 -38.04907 -34.67960 -32.95749 -30.73295 -28.50307 -28.36326 -26.23196 -24.65726 -22.43466 -21.58016 -20.84974 -17.85598 -16.98899 -16.52715 -16.41112 -16.01448 -15.64422 -15.26930 -15.03585 -14.54509 -13.67521 -13.47456 -13.23983 -13.10845 -12.89148 -12.84383 -12.51953 -12.40655 -12.25558 -12.10882 -11.69413 -11.54757 -11.46695 -11.01491 -10.55602 -10.48822 -9.35869 -9.17469 -8.10667 -6.17842 1.37879 1.41216 1.51758 2.43538 3.13217 3.21649 3.55390 4.08508 4.27792 4.34260 4.37744 4.45541 4.55036 4.61489 4.68386 4.79683 4.80337 4.86789 4.92446 4.98642 5.04258 5.09353 5.16504 5.32842 5.47906 5.54867 5.66145 5.69829 5.89884 6.12942 6.18586 6.24852 6.35426 6.61643 6.94945 7.50152 8.99298 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.010757 C = 0.008069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.339852 B = 2602.397434 C = 3469.104714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.567 5.567 3 C 0.027 3.973 4 C 0.066 3.934 5 C -0.085 4.085 6 C 0.085 3.915 7 H 0.062 0.938 8 N -0.662 5.662 9 C 0.043 3.957 10 C -0.114 4.114 11 C 0.017 3.983 12 H -0.010 1.010 13 C -0.523 4.523 14 H 0.079 0.921 15 C 0.007 3.993 16 N -0.924 5.924 17 Si 0.947 3.053 18 H -0.262 1.262 19 H -0.286 1.286 20 H -0.285 1.285 21 H 0.030 0.970 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.332 0.668 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 13.059 0.774 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.291 5.291 3 C -0.121 4.121 4 C -0.062 4.062 5 C -0.123 4.123 6 C -0.026 4.026 7 H 0.080 0.920 8 N -0.289 5.289 9 C -0.086 4.086 10 C -0.153 4.153 11 C -0.003 4.003 12 H 0.009 0.991 13 C -0.561 4.561 14 H 0.097 0.903 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.773 3.227 18 H -0.186 1.186 19 H -0.212 1.212 20 H -0.211 1.211 21 H 0.049 0.951 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.252 12.982 0.702 13.004 hybrid contribution -1.329 -1.170 -0.556 1.856 sum -1.581 11.812 0.147 11.918 Atomic orbital electron populations 1.22411 0.87181 1.02027 1.00856 1.61967 1.08596 1.14684 1.43897 1.22395 1.00895 0.87962 1.00879 1.22101 0.99657 0.93427 0.90993 1.21620 1.00173 0.92827 0.97692 1.22190 0.97385 0.94142 0.88836 0.91996 1.63044 1.23626 1.26667 1.15563 1.23120 1.01080 0.88780 0.95668 1.22741 0.98670 0.97532 0.96403 1.19871 0.94081 0.92045 0.94315 0.99146 1.21975 1.34469 0.93537 1.06110 0.90285 1.25795 0.97266 0.96416 0.99588 1.70140 1.48122 0.99425 1.38758 0.85668 0.78215 0.78341 0.80471 1.18607 1.21236 1.21134 0.95123 0.90419 0.92455 0.91223 0.90455 0.95358 0.94218 0.91304 0.92392 0.92705 0.85246 0.91033 0.90078 0.94846 0.94916 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.32 127.69 1.19 1.79 16 2 N -0.57 -15.95 5.02 -948.85 -4.76 -20.72 16 3 C 0.03 0.57 9.57 127.69 1.22 1.80 16 4 C 0.07 2.01 4.86 86.30 0.42 2.43 16 5 C -0.08 -3.16 2.97 30.59 0.09 -3.07 16 6 C 0.08 3.42 3.39 45.06 0.15 3.58 16 7 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 8 N -0.66 -23.60 6.95 -480.18 -3.34 -26.94 16 9 C 0.04 1.58 7.55 86.65 0.65 2.24 16 10 C -0.11 -5.35 5.58 31.80 0.18 -5.17 16 11 C 0.02 0.84 2.92 -10.66 -0.03 0.81 16 12 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 13 C -0.52 -28.02 7.54 25.60 0.19 -27.82 16 14 H 0.08 4.08 4.70 -2.91 -0.01 4.07 16 15 C 0.01 0.41 5.33 84.65 0.45 0.86 16 16 N -0.92 -54.52 12.42 21.45 0.27 -54.26 16 17 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 22 H 0.08 1.70 8.12 -2.39 -0.02 1.69 16 23 H 0.06 1.68 6.47 -2.39 -0.02 1.66 16 24 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 25 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 26 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.04 1.18 7.79 -2.39 -0.02 1.16 16 28 H 0.07 2.06 8.06 -2.39 -0.02 2.04 16 29 H 0.06 2.44 6.88 -2.39 -0.02 2.42 16 30 H 0.05 2.15 5.64 -2.39 -0.01 2.13 16 31 H 0.33 11.24 8.31 -89.69 -0.75 10.49 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.03 1.70 8.04 -2.39 -0.02 1.68 16 35 H 0.03 1.63 7.86 -2.39 -0.02 1.61 16 36 H 0.26 14.47 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -59.67 279.55 -0.99 -60.66 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.29 Total: 17.75 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.52 Total: -22.57 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -7.83 Total: -101.91 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -59.67 -0.99 -60.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261128188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.175 kcal (2) G-P(sol) polarization free energy of solvation -59.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds