Wall clock time and date at job start Mon Mar 30 2020 02:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99647 * 2 1 4 4 C 1.46898 * 110.99888 * 123.95022 * 2 1 3 5 5 C 1.53006 * 109.47055 * 170.00064 * 4 2 1 6 6 C 1.52996 * 109.47364 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.90665 * 54.29666 * 6 5 4 8 8 N 1.47909 * 109.91461 * 293.19733 * 6 5 4 9 9 C 1.48534 * 105.81880 * 215.31590 * 8 6 5 10 10 C 1.54936 * 103.22683 * 39.20378 * 9 8 6 11 11 C 1.53989 * 109.92036 * 175.40275 * 6 5 4 12 12 H 1.09001 * 110.31112 * 239.49447 * 11 6 5 13 13 C 1.50701 * 110.30829 * 1.66093 * 11 6 5 14 14 H 1.08004 * 119.99757 * 359.97438 * 13 11 6 15 15 C 1.37875 * 120.00342 * 179.97438 * 13 11 6 16 16 N 1.31513 * 119.99460 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00164 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46947 * 60.00552 * 17 15 13 19 19 H 1.48501 * 109.47217 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47332 * 300.00218 * 17 15 13 21 21 H 1.08992 * 109.47459 * 56.04762 * 1 2 3 22 22 H 1.09004 * 109.47040 * 176.04912 * 1 2 3 23 23 H 1.09000 * 109.47033 * 296.04865 * 1 2 3 24 24 H 1.09002 * 109.47611 * 59.99815 * 3 2 1 25 25 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47141 * 299.99621 * 3 2 1 27 27 H 1.09000 * 109.47384 * 290.00200 * 4 2 1 28 28 H 1.08997 * 109.47542 * 49.99973 * 4 2 1 29 29 H 1.09000 * 109.47135 * 300.00288 * 5 4 2 30 30 H 1.09004 * 109.46792 * 59.99896 * 5 4 2 31 31 H 1.00903 * 111.00146 * 94.80618 * 8 6 5 32 32 H 1.08995 * 110.66993 * 157.64605 * 9 8 6 33 33 H 1.09008 * 110.66797 * 280.77090 * 9 8 6 34 34 H 1.09005 * 110.72196 * 80.94731 * 10 9 8 35 35 H 1.08998 * 110.72525 * 204.04546 * 10 9 8 36 36 H 0.97004 * 119.99783 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9704 6 6 4.0528 -1.7535 2.1549 7 1 3.5009 -2.6876 2.2602 8 7 3.9369 -0.9572 3.3959 9 6 5.1336 -1.2963 4.2078 10 6 6.2625 -1.3945 3.1512 11 6 5.5487 -2.0493 1.9409 12 1 5.7242 -3.1250 1.9314 13 6 6.0254 -1.4291 0.6527 14 1 5.3367 -0.8733 0.0337 15 6 7.3407 -1.5713 0.2644 16 7 8.1792 -2.2486 1.0180 17 14 7.9314 -0.8032 -1.3326 18 1 7.7302 0.6671 -1.2787 19 1 9.3744 -1.0993 -1.5203 20 1 7.1590 -1.3673 -2.4685 21 1 -0.3634 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0708 23 1 -0.3633 0.4513 0.9233 24 1 1.6459 1.8948 0.8900 25 1 3.0850 1.3424 -0.0005 26 1 1.6459 1.8948 -0.8900 27 1 1.7975 -0.2247 2.0628 28 1 1.5090 -1.7406 1.1758 29 1 3.7025 -1.4965 0.0452 30 1 3.9910 0.0195 0.9323 31 1 3.0877 -1.1824 3.8921 32 1 5.3473 -0.5055 4.9269 33 1 4.9967 -2.2517 4.7145 34 1 6.6352 -0.4036 2.8916 35 1 7.0735 -2.0278 3.5110 36 1 9.1045 -2.3490 0.7447 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261128193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:15 Heat of formation + Delta-G solvation = 5.694371 kcal Electronic energy + Delta-G solvation = -14870.916871 eV Core-core repulsion = 12582.850872 eV Total energy + Delta-G solvation = -2288.065999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.22035 -36.70974 -32.64532 -31.38398 -29.06371 -27.36287 -26.94892 -24.29068 -23.24219 -20.90410 -19.70239 -18.84110 -16.04825 -15.86332 -15.09222 -14.84671 -14.41669 -14.23776 -13.72534 -13.41621 -12.33674 -12.20565 -12.01258 -11.76614 -11.62760 -11.44632 -11.32345 -10.81991 -10.78875 -10.60773 -10.39145 -9.89385 -9.81696 -9.58660 -9.12496 -8.57119 -8.33683 -8.00998 -7.73710 -5.94373 -3.94776 3.38171 3.42076 3.45653 4.30973 4.51146 5.08716 5.34279 5.39321 5.44149 5.58018 5.71099 5.83851 5.91597 5.93814 6.00837 6.13004 6.15326 6.22235 6.26855 6.36643 6.50979 6.74139 6.95866 7.16221 7.20129 7.30241 7.37716 7.47537 7.51968 7.67128 7.98007 8.07283 8.14788 8.51686 9.06144 9.69045 11.16276 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.010747 C = 0.008033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.681093 B = 2604.703756 C = 3484.906295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.051 3.949 5 C -0.081 4.081 6 C 0.076 3.924 7 H 0.022 0.978 8 N -0.668 5.668 9 C 0.031 3.969 10 C -0.092 4.092 11 C 0.046 3.954 12 H 0.028 0.972 13 C -0.512 4.512 14 H 0.074 0.926 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.888 3.112 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.277 1.277 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.019 0.981 24 H 0.020 0.980 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.314 0.686 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 3.230 1.680 11.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.125 4.125 4 C -0.077 4.077 5 C -0.119 4.119 6 C -0.034 4.034 7 H 0.041 0.959 8 N -0.296 5.296 9 C -0.098 4.098 10 C -0.131 4.131 11 C 0.027 3.973 12 H 0.046 0.954 13 C -0.550 4.550 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.203 1.203 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.070 3.580 0.974 10.731 hybrid contribution -0.088 -0.167 0.310 0.363 sum -10.158 3.413 1.284 10.793 Atomic orbital electron populations 1.22347 0.88512 1.01645 0.99765 1.61999 1.06744 1.14035 1.44308 1.22411 1.01966 0.88556 0.99523 1.22362 0.98227 0.96631 0.90433 1.21611 0.90384 1.01662 0.98215 1.22283 0.99592 0.92168 0.89319 0.95941 1.63041 1.03479 1.57142 1.05901 1.23125 0.93066 0.97096 0.96559 1.22474 0.95124 1.01151 0.94345 1.19543 0.87119 0.96102 0.94495 0.95388 1.21483 0.94912 1.33316 1.05336 0.90804 1.25013 0.97089 0.95286 0.96745 1.69976 1.04430 1.41163 1.37726 0.86724 0.77483 0.79858 0.84349 1.20307 1.21587 1.20254 0.91960 0.91811 0.96267 0.96094 0.90277 0.92235 0.94973 0.92272 0.90475 0.90833 0.87259 0.92087 0.95861 0.92176 0.92566 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.57 60.07 0.57 0.90 16 2 N -0.55 -8.55 5.02 -251.25 -1.26 -9.82 16 3 C 0.02 0.35 9.40 60.06 0.56 0.91 16 4 C 0.05 0.84 4.86 -3.82 -0.02 0.82 16 5 C -0.08 -1.59 3.30 -26.73 -0.09 -1.68 16 6 C 0.08 1.58 3.26 -66.64 -0.22 1.36 16 7 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 8 N -0.67 -12.62 6.71 -103.13 -0.69 -13.31 16 9 C 0.03 0.59 7.55 -1.90 -0.01 0.58 16 10 C -0.09 -2.18 5.78 -24.64 -0.14 -2.32 16 11 C 0.05 1.15 2.89 -90.19 -0.26 0.89 16 12 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.51 -13.76 7.51 -34.44 -0.26 -14.02 16 14 H 0.07 1.94 4.70 -52.48 -0.25 1.69 16 15 C 0.06 1.66 5.34 -17.82 -0.10 1.56 16 16 N -0.89 -25.82 12.65 55.43 0.70 -25.12 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 23 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 1.29 6.30 -51.93 -0.33 0.96 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.53 7.81 -51.93 -0.41 0.12 16 28 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 29 H 0.08 1.67 6.89 -51.93 -0.36 1.31 16 30 H 0.07 1.59 5.66 -51.93 -0.29 1.29 16 31 H 0.31 5.12 8.92 -39.29 -0.35 4.77 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.06 1.53 7.87 -51.93 -0.41 1.12 16 35 H 0.06 1.39 8.13 -51.93 -0.42 0.96 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -28.25 280.60 -8.17 -36.42 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.17 Total: 2.11 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 0.04 Total: -11.00 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -1.25 Total: -48.24 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.25 -8.17 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261128193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.111 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds