Wall clock time and date at job start Mon Mar 30 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47399 * 2 1 4 4 C 1.46896 * 111.00490 * 185.52486 * 3 2 1 5 5 C 1.50701 * 109.49966 * 65.77431 * 4 3 2 6 6 H 1.07993 * 120.00344 * 243.66573 * 5 4 3 7 7 C 1.37883 * 119.99878 * 63.66628 * 5 4 3 8 8 N 1.31516 * 119.99902 * 192.01123 * 7 5 4 9 9 Si 1.86802 * 119.99910 * 11.73475 * 7 5 4 10 10 H 1.48500 * 109.47095 * 84.67823 * 9 7 5 11 11 H 1.48502 * 109.47064 * 204.67540 * 9 7 5 12 12 H 1.48502 * 109.47205 * 324.67993 * 9 7 5 13 13 C 1.53111 * 109.50514 * 185.85379 * 4 3 2 14 14 C 1.53118 * 109.15997 * 62.32972 * 13 4 3 15 15 C 1.53033 * 109.27748 * 57.65372 * 14 13 4 16 16 N 1.46841 * 109.52546 * 300.81673 * 15 14 13 17 17 C 1.46900 * 111.00494 * 185.83703 * 16 15 14 18 18 C 1.46857 * 111.19485 * 61.74371 * 16 15 14 19 19 H 1.08998 * 109.47121 * 59.99887 * 1 2 3 20 20 H 1.09002 * 109.46942 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47276 * 299.99680 * 1 2 3 22 22 H 1.08999 * 109.47276 * 240.00320 * 2 1 3 23 23 H 1.08998 * 109.47121 * 120.00113 * 2 1 3 24 24 H 1.00897 * 111.00153 * 309.48530 * 3 2 1 25 25 H 0.97000 * 119.99677 * 179.72032 * 8 7 5 26 26 H 1.09002 * 109.52383 * 182.23230 * 13 4 3 27 27 H 1.08995 * 109.52925 * 302.42497 * 13 4 3 28 28 H 1.09000 * 109.50305 * 177.59581 * 14 13 4 29 29 H 1.09003 * 109.50494 * 297.67103 * 14 13 4 30 30 H 1.08999 * 109.46294 * 60.84058 * 15 14 13 31 31 H 1.09003 * 109.46309 * 180.81646 * 15 14 13 32 32 H 1.09001 * 109.46487 * 56.05134 * 17 16 15 33 33 H 1.08997 * 109.47674 * 176.04684 * 17 16 15 34 34 H 1.08996 * 109.47441 * 296.05335 * 17 16 15 35 35 H 1.08994 * 109.46020 * 178.23867 * 18 16 15 36 36 H 1.09003 * 109.45709 * 58.27562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4822 1.4263 -0.1320 5 6 3.8800 0.8997 -1.4868 6 1 4.4724 0.0000 -1.5638 7 6 3.4877 1.5666 -2.6281 8 7 3.6251 0.9942 -3.8042 9 14 2.7540 3.2799 -2.5031 10 1 3.8469 4.2841 -2.4552 11 1 1.8959 3.5385 -3.6872 12 1 1.9360 3.3792 -1.2677 13 6 3.9684 2.8704 0.0181 14 6 3.6131 3.3773 1.4186 15 6 4.2463 2.4571 2.4646 16 7 3.7488 1.0880 2.2794 17 6 4.2277 0.2043 3.3507 18 6 4.1191 0.5626 0.9589 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.5756 1.9256 -0.7270 25 1 3.3453 1.4618 -4.6067 26 1 5.0491 2.9070 -0.1192 27 1 3.4838 3.4977 -0.7301 28 1 3.9944 4.3904 1.5465 29 1 2.5300 3.3779 1.5415 30 1 5.3301 2.4684 2.3498 31 1 3.9832 2.8069 3.4629 32 1 3.9360 0.6145 4.3175 33 1 3.7885 -0.7858 3.2287 34 1 5.3139 0.1286 3.3009 35 1 3.7639 -0.4634 0.8637 36 1 5.2036 0.5828 0.8512 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:02 Heat of formation + Delta-G solvation = 24.044530 kcal Electronic energy + Delta-G solvation = -15691.266609 eV Core-core repulsion = 13403.996332 eV Total energy + Delta-G solvation = -2287.270277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.83495 -35.25814 -32.79000 -32.03408 -30.18662 -27.05582 -26.38113 -24.90716 -22.62152 -21.26572 -20.56524 -18.45081 -16.57716 -15.71379 -14.86209 -14.51303 -13.93823 -13.80338 -13.77910 -13.35339 -12.77512 -12.55563 -12.06675 -11.98463 -11.60845 -11.49945 -11.09424 -10.92223 -10.62933 -10.50982 -10.44301 -10.21754 -9.99519 -9.73327 -9.27600 -8.62321 -8.52787 -7.61105 -6.92156 -6.19645 -4.18643 3.21997 3.30809 3.36645 4.29713 4.57739 5.11750 5.46456 5.51445 5.60509 5.68267 5.83435 5.94901 5.99850 6.06085 6.15833 6.16867 6.25437 6.27946 6.33241 6.46413 6.56511 6.65357 6.70092 6.81149 6.97345 7.05718 7.14625 7.28871 7.52662 7.75901 7.82975 8.19954 8.58921 8.73317 8.86118 9.44520 10.93655 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.014684 C = 0.012500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.001098 B = 1906.388666 C = 2239.426026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 N -0.674 5.674 4 C 0.213 3.787 5 C -0.541 4.541 6 H 0.071 0.929 7 C 0.076 3.924 8 N -0.889 5.889 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.304 1.304 12 H -0.244 1.244 13 C -0.116 4.116 14 C -0.111 4.111 15 C 0.066 3.934 16 N -0.528 5.528 17 C 0.027 3.973 18 C 0.084 3.916 19 H 0.043 0.957 20 H 0.046 0.954 21 H 0.052 0.948 22 H 0.039 0.961 23 H 0.059 0.941 24 H 0.323 0.677 25 H 0.264 0.736 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.020 0.980 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.014 0.986 35 H 0.067 0.933 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 1.651 10.170 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 N -0.308 5.308 4 C 0.122 3.878 5 C -0.581 4.581 6 H 0.089 0.911 7 C -0.128 4.128 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.233 1.233 12 H -0.170 1.170 13 C -0.154 4.154 14 C -0.148 4.148 15 C -0.062 4.062 16 N -0.252 5.252 17 C -0.122 4.122 18 C -0.043 4.043 19 H 0.062 0.938 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.078 0.922 24 H 0.144 0.856 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.086 0.914 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.076 1.713 10.691 11.024 hybrid contribution 0.806 0.649 -1.186 1.574 sum -1.270 2.362 9.505 9.876 Atomic orbital electron populations 1.21779 0.97467 1.00149 1.01024 1.21665 0.92749 0.92131 1.00310 1.61264 1.06705 1.10881 1.51973 1.18751 0.85813 0.90742 0.92447 1.21502 1.35470 1.11942 0.89197 0.91062 1.25001 0.94884 0.97627 0.95268 1.69944 1.47265 1.37209 0.98202 0.87236 0.79596 0.85460 0.76316 1.21057 1.23262 1.17029 1.22063 1.00060 0.98128 0.95131 1.21512 1.02196 0.96075 0.95061 1.21946 0.95953 0.89685 0.98581 1.61881 1.59472 1.01394 1.02468 1.22315 0.97019 0.97663 0.95178 1.22066 0.96520 0.98686 0.87066 0.93805 0.93541 0.92929 0.94259 0.92236 0.85632 0.92561 0.92585 0.93534 0.93594 0.90298 0.96161 0.92116 0.92315 0.91975 0.96739 0.91416 0.95808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.12 37.16 0.38 -2.18 16 2 C 0.06 1.26 5.54 -3.82 -0.02 1.24 16 3 N -0.67 -14.86 5.29 -101.07 -0.53 -15.39 16 4 C 0.21 4.87 0.28 -132.68 -0.04 4.83 16 5 C -0.54 -14.66 7.52 -34.44 -0.26 -14.92 16 6 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 7 C 0.08 2.11 5.42 -17.82 -0.10 2.02 16 8 N -0.89 -26.58 13.96 55.43 0.77 -25.80 16 9 Si 0.88 21.35 23.00 -169.99 -3.91 17.44 16 10 H -0.28 -6.86 7.10 56.52 0.40 -6.46 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 12 H -0.24 -5.52 4.71 56.52 0.27 -5.26 16 13 C -0.12 -2.53 4.02 -26.61 -0.11 -2.64 16 14 C -0.11 -2.04 5.93 -26.65 -0.16 -2.20 16 15 C 0.07 1.13 5.46 -3.84 -0.02 1.11 16 16 N -0.53 -9.59 4.76 -242.97 -1.16 -10.74 16 17 C 0.03 0.40 9.59 60.06 0.58 0.98 16 18 C 0.08 1.75 3.62 -3.83 -0.01 1.73 16 19 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.92 7.11 -51.93 -0.37 0.55 16 23 H 0.06 1.19 6.55 -51.93 -0.34 0.85 16 24 H 0.32 7.46 4.59 -39.29 -0.18 7.28 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.06 2.21 -51.93 -0.11 0.95 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.53 7.73 -51.93 -0.40 1.13 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 1.42 6.40 -51.93 -0.33 1.09 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 263.77 15.07 3.97 3.97 Total: -1.00 -28.69 263.77 -6.69 -35.38 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.07 Total: 5.18 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 0.24 Total: -10.04 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.92 Total: -51.94 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -3.91 Total: 17.44 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.69 -6.69 -35.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.420 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds