Wall clock time and date at job start Mon Mar 30 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47399 * 2 1 4 4 C 1.46896 * 111.00490 * 185.52486 * 3 2 1 5 5 C 1.50701 * 109.49966 * 65.77431 * 4 3 2 6 6 H 1.07993 * 120.00344 * 243.66573 * 5 4 3 7 7 C 1.37883 * 119.99878 * 63.66628 * 5 4 3 8 8 N 1.31516 * 119.99902 * 192.01123 * 7 5 4 9 9 Si 1.86802 * 119.99910 * 11.73475 * 7 5 4 10 10 H 1.48500 * 109.47095 * 84.67823 * 9 7 5 11 11 H 1.48502 * 109.47064 * 204.67540 * 9 7 5 12 12 H 1.48502 * 109.47205 * 324.67993 * 9 7 5 13 13 C 1.53111 * 109.50514 * 185.85379 * 4 3 2 14 14 C 1.53118 * 109.15997 * 62.32972 * 13 4 3 15 15 C 1.53033 * 109.27748 * 57.65372 * 14 13 4 16 16 N 1.46841 * 109.52546 * 300.81673 * 15 14 13 17 17 C 1.46900 * 111.00494 * 185.83703 * 16 15 14 18 18 C 1.46857 * 111.19485 * 61.74371 * 16 15 14 19 19 H 1.08998 * 109.47121 * 59.99887 * 1 2 3 20 20 H 1.09002 * 109.46942 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47276 * 299.99680 * 1 2 3 22 22 H 1.08999 * 109.47276 * 240.00320 * 2 1 3 23 23 H 1.08998 * 109.47121 * 120.00113 * 2 1 3 24 24 H 1.00897 * 111.00153 * 309.48530 * 3 2 1 25 25 H 0.97000 * 119.99677 * 179.72032 * 8 7 5 26 26 H 1.09002 * 109.52383 * 182.23230 * 13 4 3 27 27 H 1.08995 * 109.52925 * 302.42497 * 13 4 3 28 28 H 1.09000 * 109.50305 * 177.59581 * 14 13 4 29 29 H 1.09003 * 109.50494 * 297.67103 * 14 13 4 30 30 H 1.08999 * 109.46294 * 60.84058 * 15 14 13 31 31 H 1.09003 * 109.46309 * 180.81646 * 15 14 13 32 32 H 1.09001 * 109.46487 * 56.05134 * 17 16 15 33 33 H 1.08997 * 109.47674 * 176.04684 * 17 16 15 34 34 H 1.08996 * 109.47441 * 296.05335 * 17 16 15 35 35 H 1.08994 * 109.46020 * 178.23867 * 18 16 15 36 36 H 1.09003 * 109.45709 * 58.27562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4822 1.4263 -0.1320 5 6 3.8800 0.8997 -1.4868 6 1 4.4724 0.0000 -1.5638 7 6 3.4877 1.5666 -2.6281 8 7 3.6251 0.9942 -3.8042 9 14 2.7540 3.2799 -2.5031 10 1 3.8469 4.2841 -2.4552 11 1 1.8959 3.5385 -3.6872 12 1 1.9360 3.3792 -1.2677 13 6 3.9684 2.8704 0.0181 14 6 3.6131 3.3773 1.4186 15 6 4.2463 2.4571 2.4646 16 7 3.7488 1.0880 2.2794 17 6 4.2277 0.2043 3.3507 18 6 4.1191 0.5626 0.9589 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.5756 1.9256 -0.7270 25 1 3.3453 1.4618 -4.6067 26 1 5.0491 2.9070 -0.1192 27 1 3.4838 3.4977 -0.7301 28 1 3.9944 4.3904 1.5465 29 1 2.5300 3.3779 1.5415 30 1 5.3301 2.4684 2.3498 31 1 3.9832 2.8069 3.4629 32 1 3.9360 0.6145 4.3175 33 1 3.7885 -0.7858 3.2287 34 1 5.3139 0.1286 3.3009 35 1 3.7639 -0.4634 0.8637 36 1 5.2036 0.5828 0.8512 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:02 Heat of formation + Delta-G solvation = 2.188032 kcal Electronic energy + Delta-G solvation = -15692.214378 eV Core-core repulsion = 13403.996332 eV Total energy + Delta-G solvation = -2288.218045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46761 -36.86555 -34.58158 -33.86690 -31.81750 -28.67665 -27.85521 -26.82776 -24.13444 -22.89662 -22.18821 -20.13653 -18.59920 -17.51175 -16.47168 -16.02353 -15.77263 -15.48119 -15.21805 -15.00947 -14.51779 -14.25603 -13.60234 -13.40261 -13.24476 -12.97597 -12.71795 -12.61644 -12.20026 -12.14048 -12.06893 -11.91369 -11.85719 -11.40124 -11.04321 -10.64621 -10.36587 -9.03735 -8.79489 -8.38157 -6.40397 1.28415 1.30720 1.42819 2.24056 2.98221 3.18152 3.77774 4.01044 4.14881 4.26820 4.46318 4.49224 4.57230 4.62799 4.66572 4.71362 4.80461 4.85803 4.90883 5.05158 5.06359 5.08215 5.16026 5.25041 5.34633 5.40689 5.47125 5.59294 5.67690 6.09612 6.23000 6.40475 6.63002 6.72953 6.88243 7.26410 8.79102 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.014684 C = 0.012500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.001098 B = 1906.388666 C = 2239.426026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.063 3.937 3 N -0.662 5.662 4 C 0.210 3.790 5 C -0.540 4.540 6 H 0.024 0.976 7 C 0.022 3.978 8 N -0.940 5.940 9 Si 0.943 3.057 10 H -0.279 1.279 11 H -0.310 1.310 12 H -0.216 1.216 13 C -0.121 4.121 14 C -0.105 4.105 15 C 0.065 3.935 16 N -0.536 5.536 17 C 0.027 3.973 18 C 0.094 3.906 19 H 0.039 0.961 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.000 1.000 23 H 0.066 0.934 24 H 0.316 0.684 25 H 0.265 0.735 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.018 0.982 35 H 0.056 0.944 36 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 3.188 12.839 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 N -0.295 5.295 4 C 0.119 3.881 5 C -0.580 4.580 6 H 0.043 0.957 7 C -0.177 4.177 8 N -0.579 5.579 9 Si 0.773 3.227 10 H -0.206 1.206 11 H -0.239 1.239 12 H -0.141 1.141 13 C -0.158 4.158 14 C -0.142 4.142 15 C -0.063 4.063 16 N -0.260 5.260 17 C -0.121 4.121 18 C -0.034 4.034 19 H 0.058 0.942 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.018 0.982 23 H 0.084 0.916 24 H 0.136 0.864 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.040 0.960 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.153 3.244 13.404 14.146 hybrid contribution 1.212 0.041 -1.995 2.335 sum -1.941 3.285 11.409 12.030 Atomic orbital electron populations 1.21709 0.94529 1.01805 1.01507 1.21680 0.95210 0.91008 0.98714 1.61320 1.05798 1.11437 1.50961 1.18734 0.86523 0.92114 0.90689 1.21788 1.34083 1.10216 0.91932 0.95743 1.25789 0.95630 1.01546 0.94692 1.70094 1.49532 1.39115 0.99143 0.86235 0.79167 0.80286 0.77036 1.20628 1.23902 1.14061 1.22037 0.99386 0.96842 0.97557 1.21485 1.02111 0.97808 0.92815 1.22042 0.95944 0.88591 0.99724 1.61853 1.59952 1.02584 1.01583 1.22392 0.97302 0.97382 0.95034 1.21790 0.95296 0.97767 0.88558 0.94220 0.91435 0.91410 0.98189 0.91560 0.86417 0.92626 0.93479 0.94427 0.90795 0.90734 0.96016 0.88905 0.89671 0.91793 0.96341 0.92560 0.97233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 10.12 71.98 0.73 -3.79 16 2 C 0.06 2.58 5.54 86.30 0.48 3.06 16 3 N -0.66 -28.32 5.29 -473.67 -2.50 -30.83 16 4 C 0.21 9.56 0.28 2.83 0.00 9.56 16 5 C -0.54 -30.37 7.52 25.60 0.19 -30.18 16 6 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 7 C 0.02 1.27 5.42 84.66 0.46 1.73 16 8 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 9 Si 0.94 44.37 23.00 68.60 1.58 45.94 16 10 H -0.28 -12.89 7.10 99.48 0.71 -12.19 16 11 H -0.31 -14.79 7.11 99.48 0.71 -14.09 16 12 H -0.22 -9.11 4.71 99.48 0.47 -8.64 16 13 C -0.12 -5.04 4.02 30.67 0.12 -4.92 16 14 C -0.10 -3.46 5.93 30.64 0.18 -3.28 16 15 C 0.06 1.95 5.46 86.33 0.47 2.42 16 16 N -0.54 -17.99 4.76 -922.61 -4.40 -22.38 16 17 C 0.03 0.71 9.59 127.69 1.22 1.94 16 18 C 0.09 3.88 3.62 86.32 0.31 4.19 16 19 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 20 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.00 -0.01 7.11 -2.39 -0.02 -0.03 16 23 H 0.07 2.59 6.55 -2.39 -0.02 2.58 16 24 H 0.32 14.09 4.59 -89.70 -0.41 13.68 16 25 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.04 1.64 2.21 -2.39 -0.01 1.63 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 2.57 7.73 -2.39 -0.02 2.55 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 2.27 8.09 -2.39 -0.02 2.25 16 32 H 0.08 1.83 8.10 -2.39 -0.02 1.82 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.06 2.40 6.40 -2.39 -0.02 2.38 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -63.61 263.77 -0.46 -64.08 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.39 Total: 20.62 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 4.17 Total: -19.26 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -6.60 Total: -111.37 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.58 Total: 45.94 kcal Total: -63.61 -0.46 -64.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.263 kcal (2) G-P(sol) polarization free energy of solvation -63.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds