Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 N 1.46896 * 109.47239 * 59.99971 * 9 7 2 12 12 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.38346 * 119.98349 * 125.00178 * 12 9 7 14 14 N 1.32147 * 120.01848 * 179.97438 * 13 12 9 15 15 C 1.32249 * 119.98331 * 359.97438 * 14 13 12 16 16 Cl 1.73597 * 120.01570 * 179.97438 * 15 14 13 17 17 C 1.38514 * 119.96519 * 0.02562 * 15 14 13 18 18 N 1.32121 * 119.98256 * 359.72111 * 17 15 14 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.00900 * 111.00550 * 59.99964 * 11 9 7 21 21 H 1.00896 * 111.00310 * 183.95550 * 11 9 7 22 22 H 1.07999 * 119.99080 * 0.02562 * 13 12 9 23 23 H 1.08007 * 120.00979 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.1570 -4.6168 0.9821 14 7 3.0150 -5.6218 0.9825 15 6 3.9436 -5.6985 0.0439 16 17 5.0716 -7.0180 0.0440 17 6 4.0162 -4.7247 -0.9385 18 7 3.1545 -3.7232 -0.9405 19 1 -0.4850 0.8401 0.0004 20 1 0.9651 -2.5260 -2.0381 21 1 -0.1572 -3.4138 -1.1907 22 1 1.3979 -4.5548 1.7478 23 1 4.7740 -4.7868 -1.7057 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168875.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = 19.396047 kcal Electronic energy + Delta-G solvation = -11677.141439 eV Core-core repulsion = 9357.453559 eV Total energy + Delta-G solvation = -2319.687880 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.12629 -37.93795 -36.71987 -35.07308 -33.64985 -31.53741 -28.16010 -26.13655 -25.39133 -22.59404 -19.14451 -18.36567 -18.08062 -17.21652 -16.36216 -16.13108 -15.90068 -15.14679 -14.49223 -14.12705 -13.30303 -13.20692 -12.76016 -12.71227 -12.64308 -12.46542 -12.16986 -11.92539 -11.27909 -10.56792 -10.31381 -10.01978 -8.97339 -7.99656 -6.18368 -0.36655 0.00548 0.59657 1.44754 1.46913 1.54942 2.44996 2.59248 3.17368 3.24016 3.29115 3.41837 4.09833 4.17788 4.41075 4.43523 5.19062 5.29395 5.75951 6.05256 6.10610 6.58155 6.71270 7.01896 7.20188 7.52245 9.04273 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.055678 B = 0.007734 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.766503 B = 3619.565904 C = 3851.740477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.039 3.961 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.043 0.957 9 C 0.273 3.727 10 H 0.045 0.955 11 N -0.809 5.809 12 C 0.073 3.927 13 C 0.061 3.939 14 N -0.446 5.446 15 C 0.096 3.904 16 Cl -0.008 7.008 17 C 0.074 3.926 18 N -0.432 5.432 19 H 0.257 0.743 20 H 0.327 0.673 21 H 0.313 0.687 22 H 0.192 0.808 23 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -10.321 -0.715 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.165 4.165 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.061 0.939 9 C 0.162 3.838 10 H 0.063 0.937 11 N -0.335 5.335 12 C -0.069 4.069 13 C -0.099 4.099 14 N -0.163 5.163 15 C -0.072 4.072 16 Cl 0.020 6.980 17 C -0.088 4.088 18 N -0.147 5.147 19 H 0.066 0.934 20 H 0.139 0.861 21 H 0.124 0.876 22 H 0.209 0.791 23 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.254 -9.639 -0.450 11.499 hybrid contribution 1.001 -0.124 -0.134 1.017 sum 7.254 -9.763 -0.584 12.177 Atomic orbital electron populations 1.70180 1.06716 1.26556 1.47672 1.25564 0.95437 1.01478 0.94014 0.85774 0.78668 0.80320 0.77973 1.20536 1.20708 1.20065 1.20968 0.91903 0.90724 1.53927 0.93910 1.17985 0.86566 0.87799 0.91441 0.93704 1.59073 1.27661 1.42631 1.04152 1.24277 0.94816 0.97455 0.90308 1.23895 0.97610 0.89220 0.99216 1.67765 1.02651 1.23243 1.22602 1.22992 0.95202 0.93535 0.95482 1.98389 1.56374 1.45338 1.97853 1.24171 0.98247 0.88532 0.97810 1.68512 1.02164 1.19935 1.24091 0.93362 0.86068 0.87614 0.79081 0.78082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.24 12.77 21.45 0.27 -48.97 14 2 C 0.04 2.12 5.39 84.66 0.46 2.58 14 3 Si 0.95 43.16 29.54 68.60 2.03 45.19 14 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 14 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 14 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 14 7 C -0.54 -28.56 8.54 25.60 0.22 -28.34 14 8 H 0.04 2.34 7.69 -2.91 -0.02 2.32 14 9 C 0.27 12.75 2.94 43.43 0.13 12.88 14 10 H 0.05 2.21 7.89 -2.39 -0.02 2.19 14 11 N -0.81 -36.37 8.53 -174.95 -1.49 -37.86 14 12 C 0.07 2.92 5.66 42.54 0.24 3.16 14 13 C 0.06 2.11 10.85 84.67 0.92 3.02 14 14 N -0.45 -14.84 10.49 -186.10 -1.95 -16.79 14 15 C 0.10 2.88 7.29 84.70 0.62 3.50 14 16 Cl -0.01 -0.18 29.13 -2.72 -0.08 -0.26 14 17 C 0.07 2.26 11.01 84.72 0.93 3.19 14 18 N -0.43 -16.52 10.09 -183.20 -1.85 -18.37 14 19 H 0.26 13.87 8.31 -92.71 -0.77 13.10 14 20 H 0.33 14.67 8.93 -89.69 -0.80 13.87 14 21 H 0.31 12.24 9.06 -89.70 -0.81 11.43 14 22 H 0.19 5.69 7.95 -2.91 -0.02 5.67 14 23 H 0.20 4.57 8.06 -2.91 -0.02 4.55 14 Total: -1.00 -59.49 231.44 0.09 -59.40 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.35 Total: 17.67 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 3.51 Total: -0.01 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -5.02 Total: -121.99 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Total: -59.49 0.09 -59.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168875.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.798 kcal (2) G-P(sol) polarization free energy of solvation -59.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds