Wall clock time and date at job start Mon Mar 30 2020 02:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.44276 * 110.99741 * 2 1 4 4 C 1.54068 * 111.97292 * 140.68661 * 3 2 1 5 5 C 1.54293 * 112.28801 * 41.09103 * 4 3 2 6 6 H 1.09006 * 108.76517 * 280.78431 * 5 4 3 7 7 N 1.46890 * 108.77330 * 162.61451 * 5 4 3 8 8 C 1.50464 * 113.03615 * 41.69294 * 5 4 3 9 9 H 1.08999 * 109.67533 * 27.72932 * 8 5 4 10 10 C 1.53001 * 109.57209 * 148.03872 * 8 5 4 11 11 C 1.50694 * 109.47168 * 184.37606 * 10 8 5 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.54510 * 108.86146 * 267.85082 * 8 5 4 20 20 C 1.45868 * 111.58438 * 77.17687 * 19 8 5 21 21 H 1.08998 * 109.46938 * 181.97164 * 1 2 3 22 22 H 1.08998 * 109.46915 * 301.96803 * 1 2 3 23 23 H 1.09000 * 109.47184 * 61.96771 * 1 2 3 24 24 H 1.08996 * 108.98605 * 261.33260 * 3 2 1 25 25 H 1.09002 * 108.97633 * 20.13591 * 3 2 1 26 26 H 1.09005 * 108.91792 * 161.80949 * 4 3 2 27 27 H 1.08996 * 108.92439 * 280.45585 * 4 3 2 28 28 H 1.00907 * 110.99947 * 56.49279 * 7 5 4 29 29 H 1.00899 * 111.00127 * 180.44386 * 7 5 4 30 30 H 1.09007 * 109.46922 * 64.37307 * 10 8 5 31 31 H 1.09003 * 109.46836 * 304.38063 * 10 8 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.05972 * 197.71418 * 19 8 5 34 34 H 1.09002 * 109.06222 * 316.70922 * 19 8 5 35 35 H 1.09003 * 108.79153 * 59.56748 * 20 19 8 36 36 H 1.09002 * 108.79188 * 177.78951 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9860 1.3470 0.0000 4 6 3.2246 1.4890 0.9052 5 6 4.1833 0.2868 0.7781 6 1 3.7893 -0.5399 1.3693 7 7 5.4944 0.6683 1.3197 8 6 4.3623 -0.1759 -0.6424 9 1 4.2071 0.6609 -1.3233 10 6 5.7762 -0.7309 -0.8264 11 6 5.9889 -1.0941 -2.2733 12 1 5.1953 -0.9437 -2.9902 13 6 7.1969 -1.6184 -2.6821 14 7 8.1636 -1.8010 -1.8093 15 14 7.4603 -2.0692 -4.4756 16 1 8.8327 -2.6078 -4.6542 17 1 6.4681 -3.0980 -4.8783 18 1 7.2899 -0.8598 -5.3202 19 6 3.3283 -1.2846 -0.9406 20 6 1.9987 -0.7305 -1.1706 21 1 -0.3633 -1.0270 0.0354 22 1 -0.3633 0.5441 0.8718 23 1 -0.3633 0.4830 -0.9071 24 1 2.2581 1.6224 -1.0189 25 1 1.2095 2.0247 0.3548 26 1 3.7599 2.3983 0.6316 27 1 2.8975 1.5704 1.9417 28 1 5.4130 0.9851 2.2743 29 1 6.1516 -0.0937 1.2464 30 1 5.9015 -1.6188 -0.2066 31 1 6.5043 0.0244 -0.5304 32 1 9.0133 -2.1702 -2.0968 33 1 3.6425 -1.8353 -1.8272 34 1 3.2857 -1.9690 -0.0932 35 1 2.0447 -0.0479 -2.0192 36 1 1.3163 -1.5448 -1.4145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:42 Heat of formation + Delta-G solvation = 0.535168 kcal Electronic energy + Delta-G solvation = -15045.436824 eV Core-core repulsion = 12757.147105 eV Total energy + Delta-G solvation = -2288.289719 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.12507 -35.73494 -33.15913 -32.03139 -30.00524 -28.64597 -25.88282 -24.36620 -23.12734 -21.64745 -19.92493 -18.28721 -16.57185 -15.49601 -15.20349 -14.76924 -14.50706 -14.34567 -13.92956 -13.06247 -12.86674 -12.71119 -12.38205 -11.87487 -11.73678 -11.29279 -11.00561 -10.79658 -10.72485 -10.57085 -10.42495 -10.18059 -9.96135 -9.49814 -8.95025 -8.86093 -8.26572 -8.15237 -7.76583 -5.91215 -3.91065 3.37106 3.41754 3.43947 4.18390 4.52516 5.06536 5.14712 5.30675 5.36978 5.44620 5.56937 5.61267 5.78767 5.81537 5.88138 6.00037 6.08301 6.18832 6.25376 6.28752 6.54263 6.71657 6.80490 6.94192 7.17632 7.26443 7.35276 7.44173 7.79638 7.91954 8.03435 8.11111 8.21972 8.56595 9.15829 9.71042 11.20141 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037528 B = 0.008819 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.925122 B = 3174.137840 C = 3704.954077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.536 5.536 3 C 0.058 3.942 4 C -0.102 4.102 5 C 0.109 3.891 6 H 0.026 0.974 7 N -0.851 5.851 8 C -0.069 4.069 9 H 0.055 0.945 10 C 0.025 3.975 11 C -0.512 4.512 12 H 0.052 0.948 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.887 3.113 16 H -0.288 1.288 17 H -0.279 1.279 18 H -0.278 1.278 19 C -0.112 4.112 20 C 0.061 3.939 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.020 0.980 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.318 0.682 29 H 0.355 0.645 30 H 0.008 0.992 31 H 0.039 0.961 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.034 0.966 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.252 3.781 4.440 13.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.261 5.261 3 C -0.071 4.071 4 C -0.141 4.141 5 C -0.002 4.002 6 H 0.044 0.956 7 N -0.383 5.383 8 C -0.088 4.088 9 H 0.073 0.927 10 C -0.012 4.012 11 C -0.550 4.550 12 H 0.070 0.930 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.715 3.285 16 H -0.214 1.214 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.150 4.150 20 C -0.066 4.066 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.039 0.961 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.172 0.828 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.900 4.009 4.309 13.276 hybrid contribution -0.260 -0.644 -1.041 1.251 sum -12.160 3.365 3.268 13.034 Atomic orbital electron populations 1.22432 0.88062 1.01723 0.99870 1.61679 1.06648 1.14950 1.42782 1.21883 0.96634 0.89155 0.99416 1.21953 0.94694 0.98990 0.98422 1.21046 0.87741 0.94459 0.96932 0.95585 1.59090 1.10885 1.44476 1.23849 1.20961 0.98017 0.96474 0.93328 0.92660 1.19147 0.90163 0.95740 0.96161 1.21232 0.98282 1.41088 0.94416 0.92986 1.24990 0.96278 0.96146 0.97015 1.69946 1.04332 1.45603 1.33691 0.86750 0.77076 0.78690 0.85992 1.21412 1.20440 1.20415 1.20643 0.92781 0.98831 1.02731 1.21142 0.97847 0.97441 0.90188 0.91670 0.91848 0.96113 0.93910 0.92599 0.91459 0.93287 0.87103 0.82841 0.97407 0.94241 0.93149 0.89962 0.92740 0.94817 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.19 60.07 0.55 0.87 16 2 N -0.54 -7.92 4.48 -247.87 -1.11 -9.03 16 3 C 0.06 0.85 5.17 -4.67 -0.02 0.83 16 4 C -0.10 -1.59 5.67 -25.50 -0.14 -1.73 16 5 C 0.11 2.00 2.73 -68.31 -0.19 1.81 16 6 H 0.03 0.50 7.38 -51.93 -0.38 0.11 16 7 N -0.85 -15.59 8.32 -5.17 -0.04 -15.63 16 8 C -0.07 -1.44 1.75 -91.09 -0.16 -1.60 16 9 H 0.05 1.22 7.17 -51.93 -0.37 0.85 16 10 C 0.03 0.64 3.20 -27.89 -0.09 0.55 16 11 C -0.51 -14.35 8.16 -34.44 -0.28 -14.63 16 12 H 0.05 1.42 7.22 -52.49 -0.38 1.04 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.11 -2.14 4.85 -29.31 -0.14 -2.28 16 20 C 0.06 0.97 4.96 -6.71 -0.03 0.94 16 21 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 22 H 0.06 0.66 8.01 -51.93 -0.42 0.24 16 23 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.04 0.66 6.51 -51.93 -0.34 0.32 16 25 H 0.06 0.69 7.49 -51.93 -0.39 0.31 16 26 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.32 4.91 8.99 -39.29 -0.35 4.55 16 29 H 0.35 7.08 6.67 -39.29 -0.26 6.82 16 30 H 0.01 0.21 7.98 -51.92 -0.41 -0.21 16 31 H 0.04 1.08 6.56 -51.93 -0.34 0.74 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.72 6.66 -51.93 -0.35 1.37 16 34 H 0.05 1.05 7.59 -51.93 -0.39 0.66 16 35 H 0.03 0.55 7.24 -51.93 -0.38 0.18 16 36 H 0.06 0.83 7.74 -51.93 -0.40 0.43 16 LS Contribution 272.08 15.07 4.10 4.10 Total: -1.00 -29.57 272.08 -7.93 -37.50 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.99 Total: 6.15 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.61 Total: -13.73 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.42 Total: -50.84 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.57 -7.93 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.032 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds