Wall clock time and date at job start Mon Mar 30 2020 02:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.44276 * 110.99741 * 2 1 4 4 C 1.54068 * 111.97292 * 140.68661 * 3 2 1 5 5 C 1.54293 * 112.28801 * 41.09103 * 4 3 2 6 6 H 1.09006 * 108.76517 * 280.78431 * 5 4 3 7 7 N 1.46890 * 108.77330 * 162.61451 * 5 4 3 8 8 C 1.50464 * 113.03615 * 41.69294 * 5 4 3 9 9 H 1.08999 * 109.67533 * 27.72932 * 8 5 4 10 10 C 1.53001 * 109.57209 * 148.03872 * 8 5 4 11 11 C 1.50694 * 109.47168 * 184.37606 * 10 8 5 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.54510 * 108.86146 * 267.85082 * 8 5 4 20 20 C 1.45868 * 111.58438 * 77.17687 * 19 8 5 21 21 H 1.08998 * 109.46938 * 181.97164 * 1 2 3 22 22 H 1.08998 * 109.46915 * 301.96803 * 1 2 3 23 23 H 1.09000 * 109.47184 * 61.96771 * 1 2 3 24 24 H 1.08996 * 108.98605 * 261.33260 * 3 2 1 25 25 H 1.09002 * 108.97633 * 20.13591 * 3 2 1 26 26 H 1.09005 * 108.91792 * 161.80949 * 4 3 2 27 27 H 1.08996 * 108.92439 * 280.45585 * 4 3 2 28 28 H 1.00907 * 110.99947 * 56.49279 * 7 5 4 29 29 H 1.00899 * 111.00127 * 180.44386 * 7 5 4 30 30 H 1.09007 * 109.46922 * 64.37307 * 10 8 5 31 31 H 1.09003 * 109.46836 * 304.38063 * 10 8 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.05972 * 197.71418 * 19 8 5 34 34 H 1.09002 * 109.06222 * 316.70922 * 19 8 5 35 35 H 1.09003 * 108.79153 * 59.56748 * 20 19 8 36 36 H 1.09002 * 108.79188 * 177.78951 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9860 1.3470 0.0000 4 6 3.2246 1.4890 0.9052 5 6 4.1833 0.2868 0.7781 6 1 3.7893 -0.5399 1.3693 7 7 5.4944 0.6683 1.3197 8 6 4.3623 -0.1759 -0.6424 9 1 4.2071 0.6609 -1.3233 10 6 5.7762 -0.7309 -0.8264 11 6 5.9889 -1.0941 -2.2733 12 1 5.1953 -0.9437 -2.9902 13 6 7.1969 -1.6184 -2.6821 14 7 8.1636 -1.8010 -1.8093 15 14 7.4603 -2.0692 -4.4756 16 1 8.8327 -2.6078 -4.6542 17 1 6.4681 -3.0980 -4.8783 18 1 7.2899 -0.8598 -5.3202 19 6 3.3283 -1.2846 -0.9406 20 6 1.9987 -0.7305 -1.1706 21 1 -0.3633 -1.0270 0.0354 22 1 -0.3633 0.5441 0.8718 23 1 -0.3633 0.4830 -0.9071 24 1 2.2581 1.6224 -1.0189 25 1 1.2095 2.0247 0.3548 26 1 3.7599 2.3983 0.6316 27 1 2.8975 1.5704 1.9417 28 1 5.4130 0.9851 2.2743 29 1 6.1516 -0.0937 1.2464 30 1 5.9015 -1.6188 -0.2066 31 1 6.5043 0.0244 -0.5304 32 1 9.0133 -2.1702 -2.0968 33 1 3.6425 -1.8353 -1.8272 34 1 3.2857 -1.9690 -0.0932 35 1 2.0447 -0.0479 -2.0192 36 1 1.3163 -1.5448 -1.4145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:42 Heat of formation + Delta-G solvation = -20.608253 kcal Electronic energy + Delta-G solvation = -15046.353672 eV Core-core repulsion = 12757.147105 eV Total energy + Delta-G solvation = -2289.206567 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50019 -37.16360 -35.01628 -33.76713 -31.27359 -30.44458 -27.38862 -25.92355 -24.46521 -23.40080 -21.30583 -19.86851 -18.58879 -16.85857 -16.73107 -16.34064 -16.10839 -15.84333 -15.26993 -14.43635 -14.23242 -14.12529 -14.03281 -13.68054 -13.12139 -12.90160 -12.67160 -12.41843 -12.28211 -12.11950 -12.01872 -11.72381 -11.56228 -11.22197 -10.88972 -10.74171 -10.44773 -9.42815 -9.14598 -8.12142 -6.19621 1.40226 1.42617 1.50048 2.44514 3.04919 3.21180 3.66879 3.98202 4.05381 4.20583 4.34934 4.42114 4.52987 4.56222 4.63734 4.80711 4.83680 4.88230 4.92805 5.05739 5.13583 5.25491 5.30237 5.33173 5.45711 5.49388 5.68031 5.92682 5.96115 6.17301 6.30864 6.36810 6.45310 6.76028 7.00251 7.46849 8.99169 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037528 B = 0.008819 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.925122 B = 3174.137840 C = 3704.954077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.059 3.941 4 C -0.096 4.096 5 C 0.113 3.887 6 H 0.020 0.980 7 N -0.858 5.858 8 C -0.061 4.061 9 H 0.042 0.958 10 C 0.036 3.964 11 C -0.529 4.529 12 H 0.054 0.946 13 C 0.000 4.000 14 N -0.931 5.931 15 Si 0.955 3.045 16 H -0.285 1.285 17 H -0.268 1.268 18 H -0.271 1.271 19 C -0.102 4.102 20 C 0.065 3.935 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.029 0.971 24 H 0.030 0.970 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.336 0.664 29 H 0.342 0.658 30 H -0.018 1.018 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.030 0.970 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.161 4.266 4.158 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.070 4.070 4 C -0.135 4.135 5 C 0.002 3.998 6 H 0.038 0.962 7 N -0.390 5.390 8 C -0.080 4.080 9 H 0.061 0.939 10 C -0.001 4.001 11 C -0.567 4.567 12 H 0.072 0.928 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.780 3.220 16 H -0.210 1.210 17 H -0.193 1.193 18 H -0.196 1.196 19 C -0.140 4.140 20 C -0.062 4.062 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.000 1.000 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.841 4.511 4.040 15.108 hybrid contribution 0.346 -0.792 -0.897 1.246 sum -13.495 3.719 3.142 14.346 Atomic orbital electron populations 1.22516 0.85695 1.02744 1.01096 1.61595 1.08788 1.14883 1.41841 1.21887 0.96869 0.89728 0.98541 1.21914 0.94507 0.97060 1.00012 1.20987 0.88317 0.95753 0.94756 0.96181 1.59056 1.10727 1.43861 1.25357 1.20809 0.95726 0.96381 0.95070 0.93936 1.18960 0.92608 0.93957 0.94556 1.21638 0.98484 1.40898 0.95666 0.92760 1.25867 0.96044 0.96108 1.01667 1.70083 1.04794 1.46474 1.35871 0.85659 0.77189 0.78728 0.80410 1.21022 1.19314 1.19626 1.20502 0.94225 0.97952 1.01321 1.20973 0.96316 0.98160 0.90755 0.90908 0.90153 0.95216 0.95147 0.89722 0.91851 0.91349 0.85099 0.84305 0.99961 0.96713 0.93092 0.92327 0.93225 0.95186 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.19 127.69 1.17 1.70 16 2 N -0.55 -14.72 4.48 -938.11 -4.21 -18.92 16 3 C 0.06 1.56 5.17 87.15 0.45 2.01 16 4 C -0.10 -2.81 5.67 31.39 0.18 -2.64 16 5 C 0.11 4.10 2.73 44.54 0.12 4.22 16 6 H 0.02 0.76 7.38 -2.38 -0.02 0.74 16 7 N -0.86 -31.71 8.32 -170.28 -1.42 -33.13 16 8 C -0.06 -2.59 1.75 -11.10 -0.02 -2.61 16 9 H 0.04 1.90 7.17 -2.39 -0.02 1.88 16 10 C 0.04 1.93 3.20 29.85 0.10 2.03 16 11 C -0.53 -30.30 8.16 25.60 0.21 -30.09 16 12 H 0.05 3.01 7.22 -2.91 -0.02 2.99 16 13 C 0.00 0.03 5.46 84.66 0.46 0.49 16 14 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 15 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 16 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 19 C -0.10 -3.90 4.85 28.92 0.14 -3.76 16 20 C 0.07 1.99 4.96 83.94 0.42 2.41 16 21 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 22 H 0.08 1.33 8.01 -2.39 -0.02 1.31 16 23 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.03 0.88 6.51 -2.39 -0.02 0.87 16 25 H 0.08 1.77 7.49 -2.39 -0.02 1.75 16 26 H 0.06 1.91 8.13 -2.38 -0.02 1.89 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.34 10.17 8.99 -89.69 -0.81 9.37 16 29 H 0.34 14.20 6.67 -89.70 -0.60 13.60 16 30 H -0.02 -1.03 7.98 -2.38 -0.02 -1.05 16 31 H 0.01 0.84 6.56 -2.39 -0.02 0.83 16 32 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 33 H 0.06 2.49 6.66 -2.39 -0.02 2.48 16 34 H 0.05 1.92 7.59 -2.39 -0.02 1.90 16 35 H 0.03 0.94 7.24 -2.39 -0.02 0.93 16 36 H 0.08 2.04 7.74 -2.39 -0.02 2.02 16 Total: -1.00 -63.84 272.08 -0.43 -64.27 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.34 Total: 23.85 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 3.23 Total: -26.23 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -5.34 Total: -108.98 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.84 -0.43 -64.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.660 kcal (2) G-P(sol) polarization free energy of solvation -63.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds