Wall clock time and date at job start Mon Mar 30 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47629 * 111.00228 * 2 1 4 4 C 1.50816 * 108.03649 * 150.30405 * 3 2 1 5 5 C 1.53819 * 111.61586 * 95.07156 * 4 3 2 6 6 H 1.09000 * 108.98437 * 79.59972 * 5 4 3 7 7 N 1.46895 * 108.98343 * 198.40428 * 5 4 3 8 8 C 1.54267 * 112.02865 * 318.99240 * 5 4 3 9 9 H 1.09005 * 108.76789 * 79.33096 * 8 5 4 10 10 C 1.52997 * 108.99581 * 197.74231 * 8 5 4 11 11 C 1.50700 * 109.47352 * 188.11497 * 10 8 5 12 12 H 1.07993 * 120.00053 * 0.02562 * 11 10 8 13 13 C 1.37870 * 119.99829 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00194 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00037 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47091 * 89.99851 * 15 13 11 17 17 H 1.48496 * 109.47459 * 209.99996 * 15 13 11 18 18 H 1.48501 * 109.47261 * 330.00019 * 15 13 11 19 19 C 1.50757 * 112.56279 * 318.61807 * 8 5 4 20 20 C 1.39781 * 111.00320 * 231.09021 * 2 1 3 21 21 H 1.08997 * 109.46972 * 188.90613 * 1 2 3 22 22 H 1.08997 * 109.47307 * 308.91053 * 1 2 3 23 23 H 1.09004 * 109.46941 * 68.90911 * 1 2 3 24 24 H 1.09002 * 109.74910 * 269.94349 * 3 2 1 25 25 H 1.09004 * 109.74829 * 30.67288 * 3 2 1 26 26 H 1.08995 * 109.05035 * 215.61792 * 4 3 2 27 27 H 1.09004 * 109.05275 * 334.59423 * 4 3 2 28 28 H 1.00906 * 111.00006 * 299.99922 * 7 5 4 29 29 H 1.00899 * 111.00458 * 63.94660 * 7 5 4 30 30 H 1.08999 * 109.47214 * 308.11998 * 10 8 5 31 31 H 1.09003 * 109.46754 * 68.11388 * 10 8 5 32 32 H 0.97002 * 120.00060 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.54238 * 332.99392 * 19 8 5 34 34 H 1.08999 * 109.53910 * 212.81903 * 19 8 5 35 35 H 1.08995 * 109.02346 * 68.54807 * 20 2 1 36 36 H 1.09005 * 109.02059 * 309.72269 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3782 0.0000 4 6 3.3284 1.3677 0.7104 5 6 4.4983 1.2352 -0.2794 6 1 4.6967 2.2094 -0.7263 7 7 5.6938 0.7924 0.4503 8 6 4.1943 0.2222 -1.4024 9 1 3.5594 0.7034 -2.1464 10 6 5.5077 -0.1904 -2.0699 11 6 5.2109 -1.0214 -3.2916 12 1 4.1879 -1.2337 -3.5648 13 6 6.2455 -1.5106 -4.0604 14 7 7.4914 -1.2517 -3.7279 15 14 5.8778 -2.5401 -5.5751 16 1 5.7486 -1.6517 -6.7580 17 1 6.9845 -3.5046 -5.7989 18 1 4.6077 -3.2825 -5.3727 19 6 3.4972 -1.0138 -0.8932 20 6 1.9700 -0.8196 -1.0154 21 1 -0.3633 -1.0153 0.1591 22 1 -0.3634 0.6455 0.7996 23 1 -0.3633 0.3698 -0.9589 24 1 2.1310 1.7217 -1.0259 25 1 1.3063 2.0383 0.5234 26 1 3.4398 2.2959 1.2707 27 1 3.3544 0.5278 1.4048 28 1 5.9454 1.4552 1.1684 29 1 5.5593 -0.1287 0.8398 30 1 6.0621 0.7012 -2.3628 31 1 6.1036 -0.7748 -1.3689 32 1 8.2193 -1.5956 -4.2691 33 1 3.7616 -1.1773 0.1515 34 1 3.8038 -1.8756 -1.4861 35 1 1.7455 -0.3665 -1.9810 36 1 1.4825 -1.7930 -0.9593 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:44 Heat of formation + Delta-G solvation = -5.039065 kcal Electronic energy + Delta-G solvation = -15075.189854 eV Core-core repulsion = 12786.658418 eV Total energy + Delta-G solvation = -2288.531436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.31922 -35.77091 -33.27155 -31.71068 -30.16384 -28.48384 -25.73676 -24.14459 -23.65173 -21.34696 -20.39802 -18.05816 -16.53089 -15.72884 -15.21902 -15.10712 -14.71019 -14.38009 -13.68694 -12.92492 -12.75219 -12.51152 -12.21870 -12.01744 -11.86470 -11.36586 -11.30993 -10.98554 -10.82197 -10.52375 -10.44802 -10.10181 -9.90594 -9.44064 -8.98269 -8.76985 -8.20356 -8.04125 -7.85662 -5.85612 -3.86849 3.37473 3.44009 3.46562 4.19800 4.55143 5.10632 5.15708 5.24082 5.41080 5.47426 5.49390 5.56690 5.66615 5.74224 5.88182 5.93278 5.99360 6.05919 6.18834 6.28027 6.37479 6.63528 6.80090 6.88068 7.22856 7.34257 7.38234 7.70652 7.81730 7.91305 8.04530 8.13149 8.27614 8.61076 9.22914 9.75260 11.24951 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034958 B = 0.009185 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.767788 B = 3047.629370 C = 3675.308713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.557 5.557 3 C 0.070 3.930 4 C -0.149 4.149 5 C 0.097 3.903 6 H 0.066 0.934 7 N -0.830 5.830 8 C -0.077 4.077 9 H 0.049 0.951 10 C 0.045 3.955 11 C -0.518 4.518 12 H 0.051 0.949 13 C 0.057 3.943 14 N -0.892 5.892 15 Si 0.883 3.117 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.102 4.102 20 C 0.070 3.930 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.021 0.979 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.325 0.675 29 H 0.337 0.663 30 H 0.012 0.988 31 H 0.028 0.972 32 H 0.257 0.743 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.019 0.981 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 3.761 8.645 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.282 5.282 3 C -0.057 4.057 4 C -0.189 4.189 5 C -0.015 4.015 6 H 0.084 0.916 7 N -0.357 5.357 8 C -0.096 4.096 9 H 0.068 0.932 10 C 0.007 3.993 11 C -0.557 4.557 12 H 0.069 0.931 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.712 3.288 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.140 4.140 20 C -0.059 4.059 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.151 0.849 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.037 0.963 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.097 3.574 8.263 13.527 hybrid contribution -1.087 -0.205 -0.826 1.380 sum -11.184 3.370 7.437 13.847 Atomic orbital electron populations 1.22331 0.87842 1.01839 0.99725 1.58944 1.06566 1.12358 1.50332 1.21705 0.95995 0.88191 0.99807 1.22342 0.95754 1.01235 0.99605 1.22020 0.86822 0.98852 0.93832 0.91613 1.58913 1.37447 1.06405 1.32940 1.21143 1.00416 0.93478 0.94561 0.93220 1.18960 0.90285 0.96123 0.93896 1.21388 0.92235 1.31906 1.10122 0.93079 1.24991 0.95222 0.96598 0.97562 1.69994 0.98288 1.45910 1.38963 0.86741 0.77791 0.80372 0.83931 1.20936 1.21366 1.20045 1.21543 0.91465 1.00184 1.00827 1.21076 0.97598 0.95892 0.91343 0.91825 0.91996 0.96080 0.93674 0.91906 0.92992 0.91036 0.86410 0.84921 0.96942 0.95413 0.93285 0.92776 0.89499 0.96310 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.46 60.06 0.57 0.93 16 2 N -0.56 -8.10 4.19 -248.32 -1.04 -9.14 16 3 C 0.07 0.98 5.37 -4.52 -0.02 0.96 16 4 C -0.15 -2.11 4.97 -27.40 -0.14 -2.25 16 5 C 0.10 1.66 2.96 -66.63 -0.20 1.46 16 6 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 7 N -0.83 -14.09 7.84 -3.74 -0.03 -14.12 16 8 C -0.08 -1.58 1.47 -91.08 -0.13 -1.71 16 9 H 0.05 1.07 6.57 -51.93 -0.34 0.73 16 10 C 0.04 1.16 3.73 -27.88 -0.10 1.06 16 11 C -0.52 -14.67 7.95 -34.44 -0.27 -14.94 16 12 H 0.05 1.41 7.44 -52.49 -0.39 1.02 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.40 13.29 55.43 0.74 -26.67 16 15 Si 0.88 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.10 -1.93 4.89 -27.10 -0.13 -2.07 16 20 C 0.07 1.15 4.93 -6.74 -0.03 1.12 16 21 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 22 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 23 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.04 0.69 6.67 -51.93 -0.35 0.34 16 25 H 0.06 0.75 7.62 -51.93 -0.40 0.36 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.06 7.20 -51.93 -0.37 0.68 16 28 H 0.32 4.59 9.03 -39.29 -0.35 4.24 16 29 H 0.34 5.63 8.19 -39.29 -0.32 5.31 16 30 H 0.01 0.35 8.13 -51.93 -0.42 -0.07 16 31 H 0.03 0.77 7.55 -51.93 -0.39 0.38 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.05 0.98 6.41 -51.93 -0.33 0.64 16 34 H 0.09 1.86 6.60 -51.93 -0.34 1.52 16 35 H 0.02 0.33 7.55 -51.93 -0.39 -0.06 16 36 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 LS Contribution 272.86 15.07 4.11 4.11 Total: -1.00 -30.37 272.86 -7.85 -38.23 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.05 Total: 4.48 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -0.56 Total: -13.88 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.33 Total: -49.93 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.37 -7.85 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.186 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds