Wall clock time and date at job start Mon Mar 30 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47629 * 111.00228 * 2 1 4 4 C 1.50816 * 108.03649 * 150.30405 * 3 2 1 5 5 C 1.53819 * 111.61586 * 95.07156 * 4 3 2 6 6 H 1.09000 * 108.98437 * 79.59972 * 5 4 3 7 7 N 1.46895 * 108.98343 * 198.40428 * 5 4 3 8 8 C 1.54267 * 112.02865 * 318.99240 * 5 4 3 9 9 H 1.09005 * 108.76789 * 79.33096 * 8 5 4 10 10 C 1.52997 * 108.99581 * 197.74231 * 8 5 4 11 11 C 1.50700 * 109.47352 * 188.11497 * 10 8 5 12 12 H 1.07993 * 120.00053 * 0.02562 * 11 10 8 13 13 C 1.37870 * 119.99829 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00194 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00037 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47091 * 89.99851 * 15 13 11 17 17 H 1.48496 * 109.47459 * 209.99996 * 15 13 11 18 18 H 1.48501 * 109.47261 * 330.00019 * 15 13 11 19 19 C 1.50757 * 112.56279 * 318.61807 * 8 5 4 20 20 C 1.39781 * 111.00320 * 231.09021 * 2 1 3 21 21 H 1.08997 * 109.46972 * 188.90613 * 1 2 3 22 22 H 1.08997 * 109.47307 * 308.91053 * 1 2 3 23 23 H 1.09004 * 109.46941 * 68.90911 * 1 2 3 24 24 H 1.09002 * 109.74910 * 269.94349 * 3 2 1 25 25 H 1.09004 * 109.74829 * 30.67288 * 3 2 1 26 26 H 1.08995 * 109.05035 * 215.61792 * 4 3 2 27 27 H 1.09004 * 109.05275 * 334.59423 * 4 3 2 28 28 H 1.00906 * 111.00006 * 299.99922 * 7 5 4 29 29 H 1.00899 * 111.00458 * 63.94660 * 7 5 4 30 30 H 1.08999 * 109.47214 * 308.11998 * 10 8 5 31 31 H 1.09003 * 109.46754 * 68.11388 * 10 8 5 32 32 H 0.97002 * 120.00060 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.54238 * 332.99392 * 19 8 5 34 34 H 1.08999 * 109.53910 * 212.81903 * 19 8 5 35 35 H 1.08995 * 109.02346 * 68.54807 * 20 2 1 36 36 H 1.09005 * 109.02059 * 309.72269 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3782 0.0000 4 6 3.3284 1.3677 0.7104 5 6 4.4983 1.2352 -0.2794 6 1 4.6967 2.2094 -0.7263 7 7 5.6938 0.7924 0.4503 8 6 4.1943 0.2222 -1.4024 9 1 3.5594 0.7034 -2.1464 10 6 5.5077 -0.1904 -2.0699 11 6 5.2109 -1.0214 -3.2916 12 1 4.1879 -1.2337 -3.5648 13 6 6.2455 -1.5106 -4.0604 14 7 7.4914 -1.2517 -3.7279 15 14 5.8778 -2.5401 -5.5751 16 1 5.7486 -1.6517 -6.7580 17 1 6.9845 -3.5046 -5.7989 18 1 4.6077 -3.2825 -5.3727 19 6 3.4972 -1.0138 -0.8932 20 6 1.9700 -0.8196 -1.0154 21 1 -0.3633 -1.0153 0.1591 22 1 -0.3634 0.6455 0.7996 23 1 -0.3633 0.3698 -0.9589 24 1 2.1310 1.7217 -1.0259 25 1 1.3063 2.0383 0.5234 26 1 3.4398 2.2959 1.2707 27 1 3.3544 0.5278 1.4048 28 1 5.9454 1.4552 1.1684 29 1 5.5593 -0.1287 0.8398 30 1 6.0621 0.7012 -2.3628 31 1 6.1036 -0.7748 -1.3689 32 1 8.2193 -1.5956 -4.2691 33 1 3.7616 -1.1773 0.1515 34 1 3.8038 -1.8756 -1.4861 35 1 1.7455 -0.3665 -1.9810 36 1 1.4825 -1.7930 -0.9593 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:44 Heat of formation + Delta-G solvation = -26.980318 kcal Electronic energy + Delta-G solvation = -15076.141298 eV Core-core repulsion = 12786.658418 eV Total energy + Delta-G solvation = -2289.482880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65403 -37.16191 -35.16569 -33.49127 -31.40059 -30.19234 -27.35488 -25.64153 -24.99000 -23.18580 -21.63992 -19.60943 -18.55999 -17.19553 -16.77603 -16.31951 -16.26152 -15.95617 -15.08599 -14.36706 -14.12944 -14.02038 -13.87307 -13.69070 -13.27922 -12.86233 -12.66470 -12.60973 -12.44711 -12.23487 -11.94807 -11.79636 -11.62314 -11.15136 -10.85842 -10.74625 -10.44827 -9.31714 -9.09018 -8.10855 -6.20097 1.39003 1.40005 1.50755 2.43945 3.08217 3.21223 3.82278 3.95176 3.99498 4.12269 4.22843 4.32276 4.53899 4.63613 4.65019 4.71265 4.81076 4.84532 4.97868 5.03426 5.04445 5.17862 5.26378 5.38486 5.51773 5.60438 5.66406 5.98122 6.08802 6.26445 6.37562 6.46689 6.48378 6.80596 7.01819 7.46955 9.00288 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034958 B = 0.009185 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.767788 B = 3047.629370 C = 3675.308713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.563 5.563 3 C 0.068 3.932 4 C -0.135 4.135 5 C 0.101 3.899 6 H 0.056 0.944 7 N -0.847 5.847 8 C -0.066 4.066 9 H 0.036 0.964 10 C 0.058 3.942 11 C -0.532 4.532 12 H 0.054 0.946 13 C -0.001 4.001 14 N -0.932 5.932 15 Si 0.955 3.045 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.263 1.263 19 C -0.095 4.095 20 C 0.082 3.918 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.021 0.979 24 H 0.028 0.972 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.343 0.657 29 H 0.339 0.661 30 H -0.028 1.028 31 H 0.003 0.997 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.003 0.997 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.831 3.769 9.394 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.288 5.288 3 C -0.059 4.059 4 C -0.175 4.175 5 C -0.010 4.010 6 H 0.074 0.926 7 N -0.377 5.377 8 C -0.085 4.085 9 H 0.054 0.946 10 C 0.020 3.980 11 C -0.570 4.570 12 H 0.072 0.928 13 C -0.199 4.199 14 N -0.573 5.573 15 Si 0.780 3.220 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.187 1.187 19 C -0.133 4.133 20 C -0.047 4.047 21 H 0.090 0.910 22 H 0.102 0.898 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.156 0.844 29 H 0.152 0.848 30 H -0.010 1.010 31 H 0.022 0.978 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.021 0.979 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.118 3.594 9.028 15.532 hybrid contribution -0.436 -0.174 -1.038 1.139 sum -12.554 3.420 7.989 15.268 Atomic orbital electron populations 1.22418 0.85730 1.03027 1.00560 1.58938 1.08402 1.12374 1.49040 1.21788 0.96537 0.88403 0.99220 1.22180 0.94271 1.02555 0.98482 1.21865 0.88544 0.96944 0.93685 0.92556 1.58811 1.37824 1.07114 1.33949 1.20963 0.97114 0.95037 0.95393 0.94583 1.18748 0.92367 0.93610 0.93239 1.21779 0.92416 1.31930 1.10909 0.92769 1.25906 0.94971 0.97962 1.01013 1.70139 0.99363 1.47250 1.40536 0.85606 0.78067 0.78661 0.79671 1.20231 1.20866 1.18743 1.21363 0.93538 0.97884 1.00504 1.20859 0.95540 0.97011 0.91315 0.90977 0.89847 0.96078 0.95357 0.88915 0.90386 0.91068 0.84379 0.84751 1.00982 0.97829 0.93169 0.91837 0.92585 0.97912 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.46 127.69 1.21 1.81 16 2 N -0.56 -14.89 4.19 -939.55 -3.94 -18.83 16 3 C 0.07 1.71 5.37 85.45 0.46 2.17 16 4 C -0.13 -3.49 4.97 30.16 0.15 -3.34 16 5 C 0.10 3.46 2.96 45.62 0.13 3.59 16 6 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 7 N -0.85 -28.73 7.84 -165.76 -1.30 -30.03 16 8 C -0.07 -2.77 1.47 -11.09 -0.02 -2.78 16 9 H 0.04 1.59 6.57 -2.38 -0.02 1.57 16 10 C 0.06 3.13 3.73 29.85 0.11 3.24 16 11 C -0.53 -30.97 7.95 25.60 0.20 -30.77 16 12 H 0.05 3.05 7.44 -2.91 -0.02 3.03 16 13 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 14 N -0.93 -58.82 13.29 21.45 0.28 -58.53 16 15 Si 0.95 45.67 29.54 68.60 2.03 47.70 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 19 C -0.09 -3.59 4.89 30.35 0.15 -3.44 16 20 C 0.08 2.61 4.93 88.07 0.43 3.05 16 21 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 22 H 0.08 1.36 7.83 -2.39 -0.02 1.34 16 23 H 0.02 0.43 8.14 -2.38 -0.02 0.41 16 24 H 0.03 0.82 6.67 -2.39 -0.02 0.80 16 25 H 0.09 1.83 7.62 -2.39 -0.02 1.81 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 1.90 7.20 -2.39 -0.02 1.88 16 28 H 0.34 9.36 9.03 -89.69 -0.81 8.55 16 29 H 0.34 11.27 8.19 -89.70 -0.73 10.54 16 30 H -0.03 -1.74 8.13 -2.39 -0.02 -1.76 16 31 H 0.00 0.19 7.55 -2.39 -0.02 0.18 16 32 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.06 2.25 6.41 -2.39 -0.02 2.24 16 34 H 0.06 2.45 6.60 -2.39 -0.02 2.44 16 35 H 0.00 0.10 7.55 -2.39 -0.02 0.08 16 36 H 0.07 2.14 7.93 -2.38 -0.02 2.12 16 Total: -1.00 -66.81 272.86 -0.11 -66.93 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.48 Total: 18.85 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 3.29 Total: -26.09 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -4.95 Total: -107.39 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -66.81 -0.11 -66.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.949 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds