Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35595 * 119.47327 * 2 1 4 4 C 1.36047 * 122.03825 * 180.02562 * 3 2 1 5 5 Cl 1.73611 * 119.59237 * 180.02562 * 4 3 2 6 6 C 1.39054 * 120.81895 * 359.97438 * 4 3 2 7 7 C 1.40604 * 118.83171 * 0.02562 * 6 4 3 8 8 C 1.40504 * 120.91838 * 180.02562 * 7 6 4 9 9 H 1.08006 * 119.99704 * 203.72555 * 8 7 6 10 10 C 1.40028 * 119.99899 * 23.72296 * 8 7 6 11 11 N 1.30849 * 119.99830 * 17.51128 * 10 8 7 12 12 Si 1.86796 * 119.99898 * 197.50046 * 10 8 7 13 13 H 1.48499 * 109.47335 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47165 * 120.00466 * 12 10 8 15 15 H 1.48500 * 109.47249 * 240.00257 * 12 10 8 16 16 C 1.34781 * 119.46786 * 179.72361 * 2 1 3 17 17 O 1.21792 * 120.45704 * 0.02562 * 16 2 1 18 18 H 1.09006 * 109.46947 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47022 * 119.99694 * 1 2 3 20 20 H 1.08997 * 109.47145 * 240.00422 * 1 2 3 21 21 H 1.08007 * 118.97989 * 0.02562 * 3 2 1 22 22 H 1.07997 * 120.58473 * 179.97438 * 6 4 3 23 23 H 0.97002 * 119.99759 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1321 1.1805 0.0000 4 6 3.4912 1.2414 -0.0005 5 17 4.2802 2.7879 0.0002 6 6 4.2564 0.0802 -0.0005 7 6 3.6010 -1.1637 -0.0006 8 6 4.3309 -2.3643 0.0000 9 1 3.8798 -3.2706 -0.3764 10 6 5.6430 -2.3857 0.4884 11 7 6.0751 -1.4102 1.2458 12 14 6.7764 -3.8070 0.0588 13 1 6.0525 -4.7737 -0.8053 14 1 7.9656 -3.2905 -0.6654 15 1 7.2124 -4.4866 1.3051 16 6 2.1280 -1.1734 0.0057 17 8 1.5177 -2.2274 0.0103 18 1 -0.3633 1.0277 0.0005 19 1 -0.3633 -0.5138 -0.8900 20 1 -0.3633 -0.5138 0.8900 21 1 1.5671 2.1009 0.0004 22 1 5.3351 0.1330 -0.0014 23 1 6.9842 -1.4248 1.5839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261265841.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = -42.179117 kcal Electronic energy + Delta-G solvation = -11925.914534 eV Core-core repulsion = 9571.263804 eV Total energy + Delta-G solvation = -2354.650730 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.43366 -37.83040 -36.93642 -36.53843 -33.84301 -30.80410 -28.14459 -27.53526 -23.78394 -22.98210 -19.60782 -18.10332 -17.78772 -16.89057 -16.65508 -16.49056 -15.37606 -14.79968 -13.98754 -13.95235 -13.56976 -13.43011 -13.28849 -13.09992 -12.81267 -12.39717 -11.99905 -11.66185 -11.54610 -11.25368 -10.67782 -10.15572 -8.88865 -8.64678 -6.27979 0.42718 1.23551 1.34444 1.38537 1.43211 1.54331 2.15747 2.34649 2.50768 3.38414 4.09184 4.18400 4.48769 4.50710 4.70267 4.77874 5.05535 5.27047 5.62091 5.77090 6.00844 6.25207 6.46208 6.65810 6.72900 7.37333 8.17760 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.028038 B = 0.012883 C = 0.009059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.403243 B = 2172.841305 C = 3090.142518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.487 5.487 3 C -0.031 4.031 4 C -0.045 4.045 5 Cl -0.077 7.077 6 C -0.231 4.231 7 C -0.010 4.010 8 C -0.435 4.435 9 H 0.072 0.928 10 C 0.030 3.970 11 N -0.795 5.795 12 Si 0.991 3.009 13 H -0.262 1.262 14 H -0.255 1.255 15 H -0.260 1.260 16 C 0.476 3.524 17 O -0.606 6.606 18 H 0.124 0.876 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.180 0.820 22 H 0.117 0.883 23 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 5.776 -1.530 6.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.201 5.201 3 C -0.152 4.152 4 C -0.076 4.076 5 Cl -0.049 7.049 6 C -0.255 4.255 7 C -0.016 4.016 8 C -0.463 4.463 9 H 0.091 0.909 10 C -0.188 4.188 11 N -0.419 5.419 12 Si 0.810 3.190 13 H -0.186 1.186 14 H -0.179 1.179 15 H -0.185 1.185 16 C 0.276 3.724 17 O -0.494 6.494 18 H 0.142 0.858 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.197 0.803 22 H 0.135 0.865 23 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.687 5.419 -1.375 6.203 hybrid contribution 0.578 -0.389 0.074 0.700 sum -2.110 5.029 -1.301 5.607 Atomic orbital electron populations 1.22150 0.76139 1.05521 1.03054 1.44659 1.09196 1.05391 1.60855 1.20940 0.91448 0.89148 1.13706 1.19751 0.91776 0.86116 1.09921 1.98255 1.80891 1.28196 1.97521 1.20852 0.99409 0.89089 1.16115 1.19772 0.88816 0.95299 0.97754 1.19517 0.97751 0.95487 1.33586 0.90941 1.26852 0.99251 1.00638 0.92040 1.69845 1.18727 1.32238 1.21109 0.85028 0.77371 0.77130 0.79486 1.18576 1.17869 1.18462 1.19483 0.89811 0.82920 0.80137 1.90635 1.70658 1.31460 1.56630 0.85776 0.91210 0.91614 0.80288 0.86503 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.16 10.06 127.77 1.29 3.44 14 2 N -0.49 -20.24 2.98 -666.60 -1.99 -22.23 14 3 C -0.03 -1.16 10.00 83.60 0.84 -0.33 14 4 C -0.04 -1.92 6.26 21.96 0.14 -1.79 14 5 Cl -0.08 -2.76 28.91 -2.72 -0.08 -2.84 14 6 C -0.23 -11.91 8.58 23.04 0.20 -11.71 14 7 C -0.01 -0.55 5.75 -19.76 -0.11 -0.67 14 8 C -0.43 -24.45 8.81 23.26 0.20 -24.25 14 9 H 0.07 4.17 7.78 -2.91 -0.02 4.15 14 10 C 0.03 1.50 5.17 85.27 0.44 1.94 14 11 N -0.80 -40.62 10.93 21.85 0.24 -40.38 14 12 Si 0.99 38.12 29.60 68.60 2.03 40.15 14 13 H -0.26 -10.19 7.11 99.48 0.71 -9.49 14 14 H -0.25 -9.14 7.11 99.48 0.71 -8.43 14 15 H -0.26 -9.46 7.11 99.48 0.71 -8.75 14 16 C 0.48 25.11 7.63 86.63 0.66 25.77 14 17 O -0.61 -34.72 16.61 -4.64 -0.08 -34.80 14 18 H 0.12 2.47 7.69 -2.38 -0.02 2.46 14 19 H 0.07 2.07 8.14 -2.39 -0.02 2.05 14 20 H 0.07 1.99 8.14 -2.39 -0.02 1.98 14 21 H 0.18 5.05 7.78 -2.91 -0.02 5.03 14 22 H 0.12 6.33 6.18 -2.91 -0.02 6.31 14 23 H 0.30 13.40 8.30 -92.71 -0.77 12.63 14 Total: -1.00 -64.75 226.62 5.01 -59.74 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.23 Total: 7.93 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 3.65 Total: -7.58 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -1.75 Total: -62.61 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.08 Total: -34.80 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Atomic # 17 Polarization: -2.76 SS G_CDS: -0.08 Total: -2.84 kcal Total: -64.75 5.01 -59.74 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265841.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.564 kcal (2) G-P(sol) polarization free energy of solvation -64.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds