Wall clock time and date at job start Mon Mar 30 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00379 * 2 1 4 4 H 1.48501 * 109.47280 * 240.00437 * 3 2 1 5 5 H 1.48507 * 109.46424 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47407 * 119.99438 * 3 2 1 7 7 C 1.37878 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00001 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47120 * 299.99973 * 9 7 2 11 11 O 1.42905 * 109.46937 * 59.99939 * 9 7 2 12 12 C 1.50699 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.38708 * 120.78259 * 279.72327 * 12 9 7 14 14 C 1.38151 * 119.19404 * 179.70709 * 13 12 9 15 15 N 1.31898 * 120.78041 * 0.57861 * 14 13 12 16 16 C 1.31957 * 121.70913 * 359.71575 * 15 14 13 17 17 Cl 1.73594 * 119.63389 * 179.97438 * 16 15 14 18 18 C 1.38393 * 120.72622 * 359.97438 * 16 15 14 19 19 H 0.96997 * 119.99806 * 0.02562 * 1 2 3 20 20 H 0.96691 * 114.00079 * 59.99815 * 11 9 7 21 21 H 1.08004 * 120.40567 * 359.97438 * 13 12 9 22 22 H 1.08006 * 119.60783 * 180.31778 * 14 13 12 23 23 H 1.08004 * 120.42174 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1666 12 6 2.2303 -3.6446 0.0005 13 6 2.8445 -4.0534 -1.1740 14 6 3.7416 -5.1033 -1.1352 15 7 4.0077 -5.7223 -0.0013 16 6 3.4381 -5.3649 1.1341 17 17 3.8273 -6.2177 2.5953 18 6 2.5340 -4.3179 1.1729 19 1 -0.4850 0.8400 -0.0004 20 1 0.9223 -2.5299 -1.9975 21 1 2.6275 -3.5542 -2.1068 22 1 4.2277 -5.4237 -2.0449 23 1 2.0711 -4.0293 2.1050 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288239.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:03 Heat of formation + Delta-G solvation = -30.316550 kcal Electronic energy + Delta-G solvation = -11690.326590 eV Core-core repulsion = 9336.190259 eV Total energy + Delta-G solvation = -2354.136331 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.80515 -36.47868 -35.88179 -32.34958 -32.01037 -30.54213 -27.17888 -23.89221 -23.11642 -20.98345 -17.28322 -16.71962 -16.18477 -15.34673 -14.74442 -14.33381 -14.03466 -13.75370 -12.93993 -12.73309 -11.66050 -11.46620 -11.27660 -11.14097 -11.07344 -10.98948 -10.38767 -9.80522 -9.36141 -9.00733 -8.70481 -8.58625 -8.42615 -6.19655 -4.40669 1.36833 1.69035 2.12243 3.20126 3.25796 3.27978 4.07919 4.28208 4.82995 5.07527 5.30911 5.40401 5.57733 5.71818 5.98924 6.10078 6.45111 6.62478 6.95625 7.44707 7.64049 7.87517 8.07407 8.60832 9.09507 9.35620 10.83941 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.040927 B = 0.008429 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.974673 B = 3321.098976 C = 3509.639998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.082 3.918 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.571 4.571 8 H 0.059 0.941 9 C 0.259 3.741 10 H 0.075 0.925 11 O -0.556 6.556 12 C -0.015 4.015 13 C -0.165 4.165 14 C 0.108 3.892 15 N -0.500 5.500 16 C 0.170 3.830 17 Cl -0.052 7.052 18 C -0.153 4.153 19 H 0.265 0.735 20 H 0.348 0.652 21 H 0.138 0.862 22 H 0.158 0.842 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 -6.879 -0.112 8.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.125 4.125 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.608 4.608 8 H 0.077 0.923 9 C 0.201 3.799 10 H 0.093 0.907 11 O -0.359 6.359 12 C -0.023 4.023 13 C -0.185 4.185 14 C -0.048 4.048 15 N -0.212 5.212 16 C 0.007 3.993 17 Cl -0.024 7.024 18 C -0.174 4.174 19 H 0.075 0.925 20 H 0.193 0.807 21 H 0.156 0.844 22 H 0.175 0.825 23 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.964 -7.585 0.483 9.078 hybrid contribution 0.507 1.563 -0.195 1.655 sum 5.471 -6.022 0.288 8.142 Atomic orbital electron populations 1.70047 1.05983 1.27137 1.45784 1.25033 0.94788 0.99301 0.93392 0.86606 0.79660 0.82493 0.78942 1.19951 1.20971 1.19949 1.21402 0.93199 0.90140 1.56099 0.92284 1.18588 0.86660 0.87411 0.87213 0.90728 1.86650 1.37779 1.96154 1.15292 1.21980 0.94583 0.94346 0.91403 1.22012 0.98193 0.98367 0.99963 1.22488 0.95299 0.92516 0.94513 1.66863 1.25702 1.30562 0.98116 1.21522 0.95951 0.93461 0.88393 1.98360 1.93802 1.77679 1.32533 1.21713 0.99442 0.95687 1.00604 0.92499 0.80736 0.84390 0.82522 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.89 12.84 55.43 0.71 -23.18 14 2 C 0.08 2.18 5.40 -17.82 -0.10 2.08 14 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 14 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 14 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 14 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 14 7 C -0.57 -14.75 8.75 -34.44 -0.30 -15.05 14 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 14 9 C 0.26 6.16 3.10 -29.03 -0.09 6.07 14 10 H 0.08 1.92 8.04 -51.93 -0.42 1.51 14 11 O -0.56 -13.32 12.59 -35.23 -0.44 -13.77 14 12 C -0.01 -0.29 4.94 -104.33 -0.51 -0.81 14 13 C -0.17 -2.87 9.41 -39.44 -0.37 -3.24 14 14 C 0.11 1.72 11.18 -17.56 -0.20 1.52 14 15 N -0.50 -8.90 10.34 -10.36 -0.11 -9.01 14 16 C 0.17 3.05 7.27 -17.44 -0.13 2.93 14 17 Cl -0.05 -0.81 29.11 -51.86 -1.51 -2.32 14 18 C -0.15 -2.89 9.55 -39.40 -0.38 -3.26 14 19 H 0.27 7.03 8.31 -40.82 -0.34 6.69 14 20 H 0.35 7.16 7.58 45.56 0.35 7.50 14 21 H 0.14 2.13 6.89 -52.48 -0.36 1.76 14 22 H 0.16 1.90 8.06 -52.48 -0.42 1.47 14 23 H 0.14 2.48 8.06 -52.48 -0.42 2.05 14 LS Contribution 230.00 15.07 3.47 3.47 Total: -1.00 -28.87 230.00 -5.80 -34.67 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -0.82 Total: 4.66 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.07 Total: -9.76 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.60 Total: -32.19 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.44 Total: -13.77 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.51 Total: -2.32 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.87 -5.80 -34.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288239.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.352 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds