Wall clock time and date at job start Mon Mar 30 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.39782 * 111.00062 * 2 1 4 4 C 1.54425 * 111.77075 * 189.13779 * 3 2 1 5 5 C 1.50760 * 109.02905 * 282.60924 * 4 3 2 6 6 C 1.54163 * 112.60851 * 93.00936 * 5 4 3 7 7 C 1.53820 * 111.97600 * 318.48347 * 6 5 4 8 8 C 1.50697 * 109.05032 * 79.59162 * 7 6 5 9 9 H 1.07998 * 120.00048 * 242.31852 * 8 7 6 10 10 C 1.37881 * 119.99727 * 62.32154 * 8 7 6 11 11 N 1.31510 * 120.00022 * 353.04753 * 10 8 7 12 12 Si 1.86807 * 119.99756 * 173.05232 * 10 8 7 13 13 H 1.48497 * 109.46897 * 89.99498 * 12 10 8 14 14 H 1.48494 * 109.47014 * 329.99742 * 12 10 8 15 15 H 1.48498 * 109.46819 * 209.99655 * 12 10 8 16 16 C 1.53006 * 108.99380 * 198.53129 * 7 6 5 17 17 N 1.46899 * 109.46936 * 175.42621 * 16 7 6 18 18 C 1.47628 * 110.99967 * 128.90531 * 2 1 3 19 19 H 1.09007 * 109.46853 * 291.09321 * 1 2 3 20 20 H 1.09001 * 109.47073 * 51.09316 * 1 2 3 21 21 H 1.09003 * 109.47174 * 171.09733 * 1 2 3 22 22 H 1.09000 * 109.02541 * 309.73250 * 3 2 1 23 23 H 1.09003 * 109.02053 * 68.55254 * 3 2 1 24 24 H 1.09002 * 109.54455 * 42.46694 * 4 3 2 25 25 H 1.08997 * 109.54900 * 162.74091 * 4 3 2 26 26 H 1.08999 * 108.85075 * 213.81681 * 5 4 3 27 27 H 1.08992 * 108.85088 * 332.30465 * 5 4 3 28 28 H 1.09004 * 108.98360 * 197.84258 * 6 5 4 29 29 H 1.09002 * 108.98438 * 79.12616 * 6 5 4 30 30 H 0.97000 * 120.00212 * 4.83405 * 11 10 8 31 31 H 1.08999 * 109.46699 * 295.42549 * 16 7 6 32 32 H 1.09000 * 109.47018 * 55.42918 * 16 7 6 33 33 H 1.00905 * 110.99576 * 61.40678 * 17 16 7 34 34 H 1.00903 * 111.00040 * 185.35348 * 17 16 7 35 35 H 1.08991 * 109.75070 * 30.69320 * 18 2 1 36 36 H 1.09002 * 109.74753 * 269.95892 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9699 1.3050 0.0000 4 6 3.4971 1.3323 -0.2278 5 6 4.1922 0.9512 1.0546 6 6 4.4983 -0.5575 1.1372 7 6 3.3287 -1.4113 0.6184 8 6 3.3642 -1.4308 -0.8880 9 1 2.5414 -1.0180 -1.4529 10 6 4.4470 -1.9756 -1.5451 11 7 5.5071 -2.3533 -0.8647 12 14 4.4082 -2.1771 -3.4019 13 1 4.9496 -0.9525 -4.0440 14 1 3.0079 -2.3918 -3.8472 15 1 5.2361 -3.3471 -3.7901 16 6 3.4863 -2.8411 1.1399 17 7 2.3187 -3.6389 0.7421 18 6 1.9980 -0.8656 1.0725 19 1 -0.3633 0.3699 0.9589 20 1 -0.3633 0.6454 -0.7997 21 1 -0.3634 -1.0153 -0.1590 22 1 1.4824 1.8728 -0.7925 23 1 1.7455 1.7717 0.9592 24 1 3.7617 0.6218 -1.0109 25 1 3.8037 2.3352 -0.5246 26 1 5.1283 1.5050 1.1258 27 1 3.5557 1.2266 1.8955 28 1 4.6975 -0.8226 2.1755 29 1 5.3855 -0.7724 0.5416 30 1 5.5007 -2.3141 0.1045 31 1 4.3892 -3.2838 0.7193 32 1 3.5619 -2.8250 2.2272 33 1 2.2398 -3.6881 -0.2626 34 1 2.3564 -4.5621 1.1475 35 1 1.3065 -1.6875 1.2572 36 1 2.1307 -0.2830 1.9842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288481.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:36 Heat of formation + Delta-G solvation = 25.597578 kcal Electronic energy + Delta-G solvation = -15998.251681 eV Core-core repulsion = 13711.048750 eV Total energy + Delta-G solvation = -2287.202931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.06396 -35.43418 -33.04548 -31.59747 -29.90997 -27.10832 -24.84619 -24.67002 -23.45929 -21.02107 -19.75428 -18.19594 -16.36702 -15.35613 -14.93502 -14.29420 -14.13081 -13.68989 -13.47971 -12.79473 -12.69565 -12.17546 -12.01124 -11.73331 -11.29513 -10.95317 -10.90025 -10.56683 -10.42963 -10.00075 -9.98194 -9.79984 -9.70573 -9.36160 -9.18106 -8.32843 -7.99046 -7.57758 -6.94470 -5.94803 -3.73386 3.52100 3.54910 3.70687 4.65174 4.91857 5.49150 5.62252 5.75931 5.77990 5.94946 5.99209 6.10794 6.20158 6.29160 6.40138 6.42472 6.53646 6.59414 6.66760 6.71813 6.81732 7.00785 7.04964 7.15716 7.29347 7.44508 7.61473 7.80805 8.09695 8.27347 8.37021 8.51897 8.62058 8.93802 9.16965 9.88499 11.23946 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.015619 C = 0.014605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.969314 B = 1792.216920 C = 1916.626409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.528 5.528 3 C 0.093 3.907 4 C -0.133 4.133 5 C -0.097 4.097 6 C -0.124 4.124 7 C 0.057 3.943 8 C -0.534 4.534 9 H 0.083 0.917 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 1.059 2.941 13 H -0.293 1.293 14 H -0.290 1.290 15 H -0.293 1.293 16 C 0.058 3.942 17 N -0.843 5.843 18 C 0.094 3.906 19 H 0.006 0.994 20 H 0.052 0.948 21 H 0.063 0.937 22 H 0.051 0.949 23 H -0.008 1.008 24 H 0.123 0.877 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.017 0.983 29 H 0.082 0.918 30 H 0.276 0.724 31 H 0.046 0.954 32 H 0.026 0.974 33 H 0.348 0.652 34 H 0.313 0.687 35 H 0.081 0.919 36 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 2.938 2.106 6.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.251 5.251 3 C -0.037 4.037 4 C -0.170 4.170 5 C -0.135 4.135 6 C -0.162 4.162 7 C 0.056 3.944 8 C -0.573 4.573 9 H 0.101 0.899 10 C -0.197 4.197 11 N -0.579 5.579 12 Si 0.890 3.110 13 H -0.221 1.221 14 H -0.216 1.216 15 H -0.219 1.219 16 C -0.074 4.074 17 N -0.371 5.371 18 C -0.032 4.032 19 H 0.024 0.976 20 H 0.071 0.929 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.010 0.990 24 H 0.141 0.859 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.162 0.838 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -4.946 2.852 0.775 5.762 hybrid contribution -0.354 0.328 1.727 1.794 sum -5.300 3.180 2.502 6.668 Atomic orbital electron populations 1.22287 0.89228 1.01541 0.98246 1.58646 1.04587 1.12390 1.49482 1.20764 0.96652 0.89288 0.97035 1.21754 0.93321 1.00671 1.01228 1.21147 0.98116 0.97269 0.96952 1.22246 1.02635 0.93833 0.97523 1.18123 0.89732 0.89202 0.97330 1.22177 1.06973 1.38095 0.90023 0.89858 1.25610 0.92901 0.95259 1.05912 1.70833 1.29040 1.48247 1.09735 0.83674 0.75110 0.76390 0.75834 1.22056 1.21611 1.21893 1.22060 0.92086 0.97404 0.95820 1.58776 1.44655 1.17056 1.16579 1.21732 0.98705 0.94431 0.88335 0.97607 0.92895 0.91779 0.93107 0.99022 0.85903 0.94375 0.94539 0.94993 0.96389 0.89992 0.90781 0.93553 0.95511 0.83839 0.87756 0.90050 0.97808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.43 60.06 0.57 1.17 16 2 N -0.53 -10.73 2.15 -248.32 -0.53 -11.27 16 3 C 0.09 1.79 4.93 -6.75 -0.03 1.76 16 4 C -0.13 -2.73 5.60 -27.11 -0.15 -2.88 16 5 C -0.10 -2.02 5.32 -27.25 -0.14 -2.16 16 6 C -0.12 -2.84 4.37 -25.70 -0.11 -2.95 16 7 C 0.06 1.31 0.34 -156.32 -0.05 1.26 16 8 C -0.53 -13.28 3.79 -34.44 -0.13 -13.41 16 9 H 0.08 2.17 6.03 -52.49 -0.32 1.85 16 10 C 0.00 0.10 5.00 -17.82 -0.09 0.01 16 11 N -0.94 -26.17 11.99 55.43 0.66 -25.50 16 12 Si 1.06 24.56 29.91 -169.99 -5.08 19.48 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 C 0.06 1.30 5.29 -3.82 -0.02 1.28 16 17 N -0.84 -16.94 8.15 -10.37 -0.08 -17.03 16 18 C 0.09 2.01 4.62 -4.52 -0.02 1.99 16 19 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 20 H 0.05 0.82 7.86 -51.93 -0.41 0.41 16 21 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 22 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 23 H -0.01 -0.15 7.54 -51.93 -0.39 -0.54 16 24 H 0.12 2.94 5.06 -51.93 -0.26 2.68 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.63 6.57 -51.93 -0.34 0.29 16 28 H 0.02 0.39 7.89 -51.93 -0.41 -0.02 16 29 H 0.08 2.11 5.19 -51.93 -0.27 1.84 16 30 H 0.28 7.60 3.70 -40.82 -0.15 7.45 16 31 H 0.05 1.16 5.21 -51.93 -0.27 0.89 16 32 H 0.03 0.58 8.02 -51.93 -0.42 0.16 16 33 H 0.35 7.46 8.22 -39.29 -0.32 7.13 16 34 H 0.31 5.51 9.08 -39.29 -0.36 5.15 16 35 H 0.08 1.75 6.25 -51.93 -0.32 1.43 16 36 H 0.00 0.08 6.66 -51.93 -0.35 -0.26 16 LS Contribution 255.78 15.07 3.85 3.85 Total: -1.00 -26.67 255.78 -6.85 -33.52 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.48 Total: 10.88 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.19 Total: -13.93 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.05 Total: -53.80 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.67 -6.85 -33.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288481.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.113 kcal (2) G-P(sol) polarization free energy of solvation -26.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds