Wall clock time and date at job start Mon Mar 30 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.39782 * 111.00062 * 2 1 4 4 C 1.54425 * 111.77075 * 189.13779 * 3 2 1 5 5 C 1.50760 * 109.02905 * 282.60924 * 4 3 2 6 6 C 1.54163 * 112.60851 * 93.00936 * 5 4 3 7 7 C 1.53820 * 111.97600 * 318.48347 * 6 5 4 8 8 C 1.50697 * 109.05032 * 79.59162 * 7 6 5 9 9 H 1.07998 * 120.00048 * 242.31852 * 8 7 6 10 10 C 1.37881 * 119.99727 * 62.32154 * 8 7 6 11 11 N 1.31510 * 120.00022 * 353.04753 * 10 8 7 12 12 Si 1.86807 * 119.99756 * 173.05232 * 10 8 7 13 13 H 1.48497 * 109.46897 * 89.99498 * 12 10 8 14 14 H 1.48494 * 109.47014 * 329.99742 * 12 10 8 15 15 H 1.48498 * 109.46819 * 209.99655 * 12 10 8 16 16 C 1.53006 * 108.99380 * 198.53129 * 7 6 5 17 17 N 1.46899 * 109.46936 * 175.42621 * 16 7 6 18 18 C 1.47628 * 110.99967 * 128.90531 * 2 1 3 19 19 H 1.09007 * 109.46853 * 291.09321 * 1 2 3 20 20 H 1.09001 * 109.47073 * 51.09316 * 1 2 3 21 21 H 1.09003 * 109.47174 * 171.09733 * 1 2 3 22 22 H 1.09000 * 109.02541 * 309.73250 * 3 2 1 23 23 H 1.09003 * 109.02053 * 68.55254 * 3 2 1 24 24 H 1.09002 * 109.54455 * 42.46694 * 4 3 2 25 25 H 1.08997 * 109.54900 * 162.74091 * 4 3 2 26 26 H 1.08999 * 108.85075 * 213.81681 * 5 4 3 27 27 H 1.08992 * 108.85088 * 332.30465 * 5 4 3 28 28 H 1.09004 * 108.98360 * 197.84258 * 6 5 4 29 29 H 1.09002 * 108.98438 * 79.12616 * 6 5 4 30 30 H 0.97000 * 120.00212 * 4.83405 * 11 10 8 31 31 H 1.08999 * 109.46699 * 295.42549 * 16 7 6 32 32 H 1.09000 * 109.47018 * 55.42918 * 16 7 6 33 33 H 1.00905 * 110.99576 * 61.40678 * 17 16 7 34 34 H 1.00903 * 111.00040 * 185.35348 * 17 16 7 35 35 H 1.08991 * 109.75070 * 30.69320 * 18 2 1 36 36 H 1.09002 * 109.74753 * 269.95892 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9699 1.3050 0.0000 4 6 3.4971 1.3323 -0.2278 5 6 4.1922 0.9512 1.0546 6 6 4.4983 -0.5575 1.1372 7 6 3.3287 -1.4113 0.6184 8 6 3.3642 -1.4308 -0.8880 9 1 2.5414 -1.0180 -1.4529 10 6 4.4470 -1.9756 -1.5451 11 7 5.5071 -2.3533 -0.8647 12 14 4.4082 -2.1771 -3.4019 13 1 4.9496 -0.9525 -4.0440 14 1 3.0079 -2.3918 -3.8472 15 1 5.2361 -3.3471 -3.7901 16 6 3.4863 -2.8411 1.1399 17 7 2.3187 -3.6389 0.7421 18 6 1.9980 -0.8656 1.0725 19 1 -0.3633 0.3699 0.9589 20 1 -0.3633 0.6454 -0.7997 21 1 -0.3634 -1.0153 -0.1590 22 1 1.4824 1.8728 -0.7925 23 1 1.7455 1.7717 0.9592 24 1 3.7617 0.6218 -1.0109 25 1 3.8037 2.3352 -0.5246 26 1 5.1283 1.5050 1.1258 27 1 3.5557 1.2266 1.8955 28 1 4.6975 -0.8226 2.1755 29 1 5.3855 -0.7724 0.5416 30 1 5.5007 -2.3141 0.1045 31 1 4.3892 -3.2838 0.7193 32 1 3.5619 -2.8250 2.2272 33 1 2.2398 -3.6881 -0.2626 34 1 2.3564 -4.5621 1.1475 35 1 1.3065 -1.6875 1.2572 36 1 2.1307 -0.2830 1.9842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288481.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:36 Heat of formation + Delta-G solvation = 9.155648 kcal Electronic energy + Delta-G solvation = -15998.964656 eV Core-core repulsion = 13711.048750 eV Total energy + Delta-G solvation = -2287.915907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.75162 -37.13087 -34.69974 -33.47517 -31.62582 -28.69812 -26.54756 -26.50723 -25.14567 -22.69804 -21.44382 -20.01270 -18.23348 -16.98651 -16.59532 -15.93603 -15.73944 -15.54079 -15.19939 -14.48338 -14.34310 -13.83185 -13.63203 -13.33759 -12.91978 -12.74820 -12.57733 -12.37808 -12.18973 -11.84181 -11.70152 -11.45740 -11.36879 -11.11989 -10.91809 -10.23304 -9.93080 -9.31195 -8.53307 -7.96794 -5.75596 1.64241 1.69147 1.86122 2.76598 3.39398 3.52162 3.98972 4.15743 4.22141 4.33245 4.53338 4.57907 4.61328 4.66002 4.81932 4.87384 4.88252 4.96528 5.04426 5.09701 5.14348 5.28142 5.34991 5.38157 5.51610 5.71340 5.82720 6.04985 6.46504 6.53519 6.64839 6.85996 6.89030 6.96322 7.19080 7.90496 9.22168 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.015619 C = 0.014605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.969314 B = 1792.216920 C = 1916.626409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.548 5.548 3 C 0.094 3.906 4 C -0.132 4.132 5 C -0.094 4.094 6 C -0.122 4.122 7 C 0.052 3.948 8 C -0.511 4.511 9 H 0.075 0.925 10 C -0.039 4.039 11 N -0.968 5.968 12 Si 1.095 2.905 13 H -0.292 1.292 14 H -0.275 1.275 15 H -0.303 1.303 16 C 0.064 3.936 17 N -0.832 5.832 18 C 0.104 3.896 19 H 0.017 0.983 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.000 1.000 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.020 0.980 29 H 0.051 0.949 30 H 0.270 0.730 31 H 0.018 0.982 32 H 0.033 0.967 33 H 0.341 0.659 34 H 0.329 0.671 35 H 0.079 0.921 36 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 3.848 2.127 8.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.271 5.271 3 C -0.036 4.036 4 C -0.169 4.169 5 C -0.132 4.132 6 C -0.161 4.161 7 C 0.051 3.949 8 C -0.550 4.550 9 H 0.093 0.907 10 C -0.234 4.234 11 N -0.613 5.613 12 Si 0.924 3.076 13 H -0.219 1.219 14 H -0.200 1.200 15 H -0.230 1.230 16 C -0.068 4.068 17 N -0.361 5.361 18 C -0.023 4.023 19 H 0.036 0.964 20 H 0.089 0.911 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.018 0.982 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.154 0.846 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -6.554 3.765 0.802 7.601 hybrid contribution 0.112 0.059 1.762 1.766 sum -6.443 3.824 2.564 7.919 Atomic orbital electron populations 1.22306 0.87097 1.02048 0.99586 1.58572 1.06624 1.12833 1.49061 1.20760 0.95616 0.89106 0.98074 1.21685 0.94640 1.00852 0.99723 1.21121 0.98828 0.95617 0.97632 1.22182 1.01426 0.95592 0.96936 1.18174 0.90777 0.89617 0.96349 1.22209 1.05731 1.36036 0.91013 0.90680 1.26416 0.93038 0.95705 1.08289 1.70885 1.30205 1.50571 1.09612 0.83171 0.75557 0.75781 0.73141 1.21865 1.20042 1.23049 1.21912 0.91618 0.97353 0.95926 1.58726 1.43203 1.18075 1.16050 1.21544 0.97540 0.94607 0.88612 0.96403 0.91098 0.91956 0.91299 0.98215 0.89309 0.92268 0.93819 0.93901 0.96168 0.93069 0.91442 0.96390 0.94872 0.84572 0.85986 0.90258 0.97982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.15 9.43 127.69 1.20 2.36 16 2 N -0.55 -20.88 2.15 -939.56 -2.02 -22.90 16 3 C 0.09 3.36 4.93 88.07 0.43 3.80 16 4 C -0.13 -5.16 5.60 30.35 0.17 -4.99 16 5 C -0.09 -3.78 5.32 30.26 0.16 -3.62 16 6 C -0.12 -5.60 4.37 31.26 0.14 -5.47 16 7 C 0.05 2.35 0.34 -53.36 -0.02 2.33 16 8 C -0.51 -25.16 3.79 25.60 0.10 -25.06 16 9 H 0.08 3.82 6.03 -2.91 -0.02 3.81 16 10 C -0.04 -2.04 5.00 84.66 0.42 -1.62 16 11 N -0.97 -55.18 11.99 21.45 0.26 -54.92 16 12 Si 1.09 49.70 29.91 68.60 2.05 51.75 16 13 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 16 C 0.06 2.85 5.29 86.31 0.46 3.31 16 17 N -0.83 -32.54 8.15 -186.71 -1.52 -34.07 16 18 C 0.10 4.24 4.62 85.46 0.40 4.63 16 19 H 0.02 0.51 8.14 -2.38 -0.02 0.49 16 20 H 0.07 1.94 7.86 -2.39 -0.02 1.92 16 21 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 22 H 0.07 2.21 7.81 -2.39 -0.02 2.19 16 23 H 0.00 0.00 7.54 -2.39 -0.02 -0.02 16 24 H 0.09 4.17 5.06 -2.39 -0.01 4.15 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.61 6.57 -2.39 -0.02 1.60 16 28 H 0.02 0.87 7.89 -2.38 -0.02 0.85 16 29 H 0.05 2.68 5.19 -2.39 -0.01 2.67 16 30 H 0.27 15.31 3.70 -92.71 -0.34 14.96 16 31 H 0.02 0.92 5.21 -2.39 -0.01 0.90 16 32 H 0.03 1.41 8.02 -2.39 -0.02 1.39 16 33 H 0.34 14.32 8.22 -89.69 -0.74 13.58 16 34 H 0.33 11.13 9.08 -89.69 -0.81 10.32 16 35 H 0.08 3.26 6.25 -2.39 -0.01 3.24 16 36 H 0.00 0.08 6.66 -2.39 -0.02 0.07 16 Total: -1.00 -55.77 255.78 2.18 -53.59 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.05 Total: 30.88 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 3.46 Total: -24.33 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -3.29 Total: -111.89 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.75 kcal Total: -55.77 2.18 -53.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288481.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.743 kcal (2) G-P(sol) polarization free energy of solvation -55.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds