Wall clock time and date at job start Mon Mar 30 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34465 * 119.13517 * 2 1 4 4 C 1.39565 * 120.21813 * 179.97438 * 3 2 1 5 5 C 1.41259 * 120.63003 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99910 * 23.03253 * 5 4 3 7 7 C 1.39740 * 120.00174 * 203.02618 * 5 4 3 8 8 N 1.30987 * 119.99813 * 17.16774 * 7 5 4 9 9 Si 1.86794 * 120.00315 * 197.16162 * 7 5 4 10 10 H 1.48504 * 109.46988 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47128 * 119.99937 * 9 7 5 12 12 H 1.48501 * 109.47237 * 240.00304 * 9 7 5 13 13 C 1.46614 * 118.74419 * 0.02562 * 4 3 2 14 14 C 1.35892 * 118.41285 * 359.97438 * 13 4 3 15 15 Cl 1.73590 * 120.20220 * 180.02562 * 14 13 4 16 16 C 1.34309 * 119.13660 * 179.72372 * 2 1 3 17 17 O 1.21930 * 119.34877 * 0.02562 * 16 2 1 18 18 H 1.09003 * 109.47130 * 90.00411 * 1 2 3 19 19 H 1.08996 * 109.47033 * 209.99781 * 1 2 3 20 20 H 1.08993 * 109.47644 * 330.00581 * 1 2 3 21 21 H 1.08005 * 119.89091 * 359.97438 * 3 2 1 22 22 H 0.97003 * 120.00194 * 180.02562 * 8 7 5 23 23 H 1.07992 * 120.79398 * 179.97438 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1197 1.1745 0.0000 4 6 3.5151 1.2009 0.0005 5 6 4.2117 2.4298 0.0011 6 1 3.7290 3.3239 0.3670 7 6 5.5253 2.4885 -0.4718 8 7 5.9983 1.5182 -1.2138 9 14 6.6068 3.9507 -0.0458 10 1 5.8418 4.9028 0.7990 11 1 7.8036 3.4814 0.6976 12 1 7.0350 4.6303 -1.2949 13 6 4.2443 -0.0710 0.0005 14 6 3.5290 -1.2265 0.0005 15 17 4.3450 -2.7586 0.0012 16 6 2.1189 -1.1731 0.0057 17 8 1.4816 -2.2126 0.0102 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3634 0.8899 0.5137 21 1 1.5638 2.1006 -0.0004 22 1 6.9103 1.5588 -1.5417 23 1 5.3241 -0.0893 0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261295822.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:34 Heat of formation + Delta-G solvation = -34.496718 kcal Electronic energy + Delta-G solvation = -11898.424801 eV Core-core repulsion = 9544.107204 eV Total energy + Delta-G solvation = -2354.317597 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.67297 -37.66837 -37.44073 -35.98326 -33.94646 -31.03858 -28.40921 -26.82476 -24.03633 -23.12905 -19.54810 -18.15120 -17.58416 -16.94814 -16.73364 -16.48096 -15.50035 -14.80676 -14.15542 -14.02652 -13.48529 -13.25518 -13.01099 -12.90046 -12.74862 -12.40777 -12.07963 -11.86284 -11.61237 -11.05281 -10.70199 -10.27315 -8.88198 -8.56272 -6.18954 0.19552 1.09305 1.23666 1.49092 1.60008 1.62690 2.24730 2.40832 2.59119 3.37125 3.99744 4.32012 4.41644 4.54787 4.63303 4.81571 4.87250 5.18689 5.32998 5.63786 5.88846 6.26727 6.56865 6.72220 6.92923 7.33123 8.37722 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.035021 B = 0.011313 C = 0.008760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.330183 B = 2474.502886 C = 3195.481712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.464 5.464 3 C -0.069 4.069 4 C 0.008 3.992 5 C -0.476 4.476 6 H 0.095 0.905 7 C 0.035 3.965 8 N -0.844 5.844 9 Si 0.983 3.017 10 H -0.253 1.253 11 H -0.272 1.272 12 H -0.273 1.273 13 C 0.011 3.989 14 C -0.198 4.198 15 Cl -0.067 7.067 16 C 0.477 3.523 17 O -0.623 6.623 18 H 0.077 0.923 19 H 0.075 0.925 20 H 0.112 0.888 21 H 0.173 0.827 22 H 0.289 0.711 23 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 3.703 1.978 4.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.174 5.174 3 C -0.193 4.193 4 C 0.003 3.997 5 C -0.507 4.507 6 H 0.113 0.887 7 C -0.178 4.178 8 N -0.472 5.472 9 Si 0.804 3.196 10 H -0.176 1.176 11 H -0.197 1.197 12 H -0.198 1.198 13 C -0.013 4.013 14 C -0.228 4.228 15 Cl -0.039 7.039 16 C 0.280 3.720 17 O -0.515 6.515 18 H 0.095 0.905 19 H 0.094 0.906 20 H 0.131 0.869 21 H 0.190 0.810 22 H 0.100 0.900 23 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.633 2.926 1.848 4.349 hybrid contribution 0.862 0.146 -0.072 0.877 sum -1.771 3.072 1.776 3.966 Atomic orbital electron populations 1.22175 0.76297 1.05014 1.03980 1.44181 1.09531 1.05509 1.58215 1.22062 0.92526 0.88197 1.16560 1.18521 0.90403 0.92502 0.98281 1.19375 0.97980 0.94738 1.38583 0.88690 1.26639 0.99335 1.00134 0.91722 1.69841 1.17882 1.34122 1.25374 0.85120 0.77784 0.77819 0.78828 1.17593 1.19711 1.19812 1.23227 1.01154 0.90340 0.86578 1.21580 0.92525 0.87720 1.20955 1.98240 1.77588 1.30383 1.97667 1.16369 0.88036 0.83830 0.83794 1.90757 1.68903 1.32207 1.59610 0.90492 0.90604 0.86921 0.81007 0.90047 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 10.30 127.77 1.32 3.31 14 2 N -0.46 -19.09 2.94 -671.71 -1.98 -21.07 14 3 C -0.07 -2.84 10.07 84.61 0.85 -1.99 14 4 C 0.01 0.37 5.71 -20.03 -0.11 0.25 14 5 C -0.48 -21.95 9.07 23.38 0.21 -21.74 14 6 H 0.10 4.05 7.90 -2.91 -0.02 4.03 14 7 C 0.03 1.56 5.21 85.18 0.44 2.01 14 8 N -0.84 -40.44 10.85 21.80 0.24 -40.20 14 9 Si 0.98 34.52 29.59 68.60 2.03 36.55 14 10 H -0.25 -8.47 7.11 99.48 0.71 -7.77 14 11 H -0.27 -9.48 7.11 99.48 0.71 -8.77 14 12 H -0.27 -9.44 7.11 99.48 0.71 -8.73 14 13 C 0.01 0.55 8.69 23.91 0.21 0.76 14 14 C -0.20 -9.59 6.33 22.43 0.14 -9.45 14 15 Cl -0.07 -2.97 28.51 -2.72 -0.08 -3.05 14 16 C 0.48 23.08 7.39 85.02 0.63 23.70 14 17 O -0.62 -32.33 15.94 -5.09 -0.08 -32.41 14 18 H 0.08 2.11 8.14 -2.39 -0.02 2.09 14 19 H 0.08 2.41 7.31 -2.39 -0.02 2.39 14 20 H 0.11 2.51 7.98 -2.39 -0.02 2.49 14 21 H 0.17 5.79 8.01 -2.91 -0.02 5.77 14 22 H 0.29 12.68 8.30 -92.71 -0.77 11.91 14 23 H 0.14 6.90 6.25 -2.91 -0.02 6.88 14 Total: -1.00 -58.09 225.82 5.05 -53.03 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.23 Total: 10.29 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 3.69 Total: -3.14 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -1.74 Total: -61.27 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.08 Total: -32.41 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -0.08 Total: -3.05 kcal Total: -58.09 5.05 -53.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295822.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.538 kcal (2) G-P(sol) polarization free energy of solvation -58.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds