Wall clock time and date at job start Mon Mar 30 2020 02:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28627 * 124.70433 * 2 1 4 4 C 1.33605 * 115.77182 * 179.97438 * 3 2 1 5 5 C 1.47072 * 123.16399 * 179.97438 * 4 3 2 6 6 O 1.21579 * 120.00078 * 180.02562 * 5 4 3 7 7 O 1.34818 * 119.99593 * 0.02562 * 5 4 3 8 8 C 1.34884 * 116.99732 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99992 * 0.02562 * 8 7 5 10 10 C 1.38767 * 119.99858 * 179.97438 * 8 7 5 11 11 N 1.31447 * 119.99943 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99990 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46879 * 60.00338 * 12 10 8 14 14 H 1.48503 * 109.47151 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47086 * 300.00282 * 12 10 8 16 16 C 1.35350 * 113.67483 * 0.24330 * 4 3 2 17 17 S 1.70763 * 124.70324 * 179.97438 * 2 1 3 18 18 H 1.09000 * 109.47247 * 89.99210 * 1 2 3 19 19 H 1.08992 * 109.46894 * 209.99789 * 1 2 3 20 20 H 1.09005 * 109.46507 * 329.99797 * 1 2 3 21 21 H 0.97005 * 119.99897 * 179.97438 * 11 10 8 22 22 H 1.08000 * 125.58485 * 179.71657 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2394 1.0574 0.0000 4 6 3.5592 0.8500 0.0005 5 6 4.5452 1.9413 0.0001 6 8 5.7340 1.6865 0.0001 7 8 4.1306 3.2242 -0.0004 8 6 5.0860 4.1764 -0.0014 9 1 6.1287 3.8951 -0.0021 10 6 4.7290 5.5173 -0.0025 11 7 3.4599 5.8596 -0.0021 12 14 6.0520 6.8360 -0.0030 13 1 6.8971 6.6888 -1.2153 14 1 5.4143 8.1771 -0.0048 15 1 6.8965 6.6905 1.2098 16 6 3.9036 -0.4589 -0.0043 17 16 2.4792 -1.4039 0.0006 18 1 -0.3634 0.0001 -1.0277 19 1 -0.3633 -0.8899 0.5138 20 1 -0.3632 0.8900 0.5139 21 1 3.2104 6.7970 -0.0024 22 1 4.9130 -0.8432 -0.0091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306224241.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:39 Heat of formation + Delta-G solvation = -37.160064 kcal Electronic energy + Delta-G solvation = -11559.543437 eV Core-core repulsion = 9207.154055 eV Total energy + Delta-G solvation = -2352.389382 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.79358 -38.28742 -35.16373 -32.20020 -32.00072 -28.04925 -26.22030 -24.21586 -21.15537 -19.36318 -18.35581 -17.60743 -15.85585 -15.21670 -15.10077 -14.36438 -14.12400 -14.05643 -13.28325 -12.52391 -12.42013 -12.03984 -11.83289 -11.47933 -11.20489 -10.46876 -10.43544 -9.86796 -9.44321 -9.35109 -9.19599 -8.61841 -8.51760 -6.44174 -4.07727 0.83577 1.50804 1.86756 2.49988 3.17925 3.19598 3.22656 3.92655 4.08714 4.26908 4.75441 5.15111 5.22929 5.47713 5.53880 5.64150 5.88835 6.09893 6.84076 7.34905 7.86291 7.94992 8.65998 9.01911 9.84036 10.72353 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.057734 B = 0.007894 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.862693 B = 3545.978054 C = 4015.695616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.022 3.978 3 N -0.419 5.419 4 C 0.068 3.932 5 C 0.457 3.543 6 O -0.552 6.552 7 O -0.182 6.182 8 C -0.379 4.379 9 H 0.098 0.902 10 C 0.042 3.958 11 N -0.849 5.849 12 Si 0.948 3.052 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.268 1.268 16 C -0.243 4.243 17 S 0.164 5.836 18 H 0.084 0.916 19 H 0.078 0.922 20 H 0.091 0.909 21 H 0.272 0.728 22 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 -11.572 -0.001 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.259 4.259 3 N -0.134 5.134 4 C -0.065 4.065 5 C 0.303 3.697 6 O -0.451 6.451 7 O -0.087 6.087 8 C -0.455 4.455 9 H 0.116 0.884 10 C -0.163 4.163 11 N -0.485 5.485 12 Si 0.772 3.228 13 H -0.193 1.193 14 H -0.202 1.202 15 H -0.193 1.193 16 C -0.383 4.383 17 S 0.419 5.581 18 H 0.103 0.897 19 H 0.097 0.903 20 H 0.109 0.891 21 H 0.082 0.918 22 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.695 -11.910 0.003 13.202 hybrid contribution 1.346 1.382 -0.016 1.929 sum -4.349 -10.528 -0.013 11.391 Atomic orbital electron populations 1.20411 0.85066 1.04103 1.03820 1.27210 1.02264 0.91034 1.05384 1.67091 1.03375 1.30142 1.12803 1.19778 0.89119 0.92070 1.05502 1.19477 0.85699 0.83506 0.80993 1.90660 1.17037 1.84624 1.52781 1.84033 1.38928 1.12467 1.73286 1.21354 0.88529 0.83972 1.51642 0.88401 1.25441 0.97652 0.97251 0.96002 1.70034 1.15755 1.18384 1.44298 0.85681 0.79280 0.78373 0.79469 1.19319 1.20232 1.19310 1.26382 1.05315 0.96371 1.10263 1.82450 0.95600 1.12754 1.67275 0.89709 0.90331 0.89060 0.91791 0.79659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.46 36.01 0.38 -0.44 14 2 C 0.02 0.34 7.34 -13.62 -0.10 0.24 14 3 N -0.42 -9.02 10.60 -8.53 -0.09 -9.11 14 4 C 0.07 1.54 6.71 -84.54 -0.57 0.97 14 5 C 0.46 12.66 7.88 34.31 0.27 12.94 14 6 O -0.55 -15.79 15.96 -19.33 -0.31 -16.10 14 7 O -0.18 -5.67 9.68 -21.96 -0.21 -5.88 14 8 C -0.38 -11.66 9.65 30.93 0.30 -11.36 14 9 H 0.10 2.97 6.86 -52.49 -0.36 2.61 14 10 C 0.04 1.23 5.49 -17.52 -0.10 1.13 14 11 N -0.85 -25.59 13.67 55.48 0.76 -24.83 14 12 Si 0.95 21.56 29.55 -169.99 -5.02 16.54 14 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 14 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 14 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 14 16 C -0.24 -4.33 10.62 29.70 0.32 -4.01 14 17 S 0.16 2.16 22.91 -107.50 -2.46 -0.31 14 18 H 0.08 0.81 8.14 -51.93 -0.42 0.39 14 19 H 0.08 0.62 8.14 -51.93 -0.42 0.19 14 20 H 0.09 1.07 8.14 -51.93 -0.42 0.65 14 21 H 0.27 7.44 8.31 -40.82 -0.34 7.10 14 22 H 0.19 3.03 8.03 -52.49 -0.42 2.61 14 LS Contribution 229.46 15.07 3.46 3.46 Total: -1.00 -35.31 229.46 -4.57 -39.88 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: -1.18 Total: -3.13 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 0.50 Total: -0.52 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.67 Total: -33.94 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.52 Total: -21.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.46 Total: -0.31 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -35.31 -4.57 -39.88 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306224241.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.718 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds