Wall clock time and date at job start Mon Mar 30 2020 02:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28627 * 124.70433 * 2 1 4 4 C 1.33605 * 115.77182 * 179.97438 * 3 2 1 5 5 C 1.47072 * 123.16399 * 179.97438 * 4 3 2 6 6 O 1.21579 * 120.00078 * 180.02562 * 5 4 3 7 7 O 1.34818 * 119.99593 * 0.02562 * 5 4 3 8 8 C 1.34884 * 116.99732 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99992 * 0.02562 * 8 7 5 10 10 C 1.38767 * 119.99858 * 179.97438 * 8 7 5 11 11 N 1.31447 * 119.99943 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99990 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46879 * 60.00338 * 12 10 8 14 14 H 1.48503 * 109.47151 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47086 * 300.00282 * 12 10 8 16 16 C 1.35350 * 113.67483 * 0.24330 * 4 3 2 17 17 S 1.70763 * 124.70324 * 179.97438 * 2 1 3 18 18 H 1.09000 * 109.47247 * 89.99210 * 1 2 3 19 19 H 1.08992 * 109.46894 * 209.99789 * 1 2 3 20 20 H 1.09005 * 109.46507 * 329.99797 * 1 2 3 21 21 H 0.97005 * 119.99897 * 179.97438 * 11 10 8 22 22 H 1.08000 * 125.58485 * 179.71657 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2394 1.0574 0.0000 4 6 3.5592 0.8500 0.0005 5 6 4.5452 1.9413 0.0001 6 8 5.7340 1.6865 0.0001 7 8 4.1306 3.2242 -0.0004 8 6 5.0860 4.1764 -0.0014 9 1 6.1287 3.8951 -0.0021 10 6 4.7290 5.5173 -0.0025 11 7 3.4599 5.8596 -0.0021 12 14 6.0520 6.8360 -0.0030 13 1 6.8971 6.6888 -1.2153 14 1 5.4143 8.1771 -0.0048 15 1 6.8965 6.6905 1.2098 16 6 3.9036 -0.4589 -0.0043 17 16 2.4792 -1.4039 0.0006 18 1 -0.3634 0.0001 -1.0277 19 1 -0.3633 -0.8899 0.5138 20 1 -0.3632 0.8900 0.5139 21 1 3.2104 6.7970 -0.0024 22 1 4.9130 -0.8432 -0.0091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306224241.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:39 Heat of formation + Delta-G solvation = -63.589568 kcal Electronic energy + Delta-G solvation = -11560.689506 eV Core-core repulsion = 9207.154055 eV Total energy + Delta-G solvation = -2353.535451 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.53171 -40.16712 -37.34717 -34.38912 -33.27280 -29.32953 -28.24372 -26.03276 -22.73343 -20.96582 -20.16173 -19.71376 -17.56959 -17.11159 -16.92903 -16.24217 -15.68877 -15.65680 -14.63170 -14.27029 -13.72046 -13.55963 -13.13191 -13.04689 -12.96828 -12.43370 -12.19591 -12.10731 -11.39255 -10.76640 -10.72875 -10.66948 -9.85116 -8.60501 -6.40390 -0.56355 0.27535 0.52066 0.85012 1.31327 1.43791 1.49468 2.09100 2.18358 2.65260 2.95055 3.25664 3.95443 4.21337 4.40622 4.63617 4.73686 4.94385 5.09097 5.21381 5.72239 6.37500 6.66046 6.81221 7.66205 8.59831 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.057734 B = 0.007894 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.862693 B = 3545.978054 C = 4015.695616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.005 3.995 3 N -0.480 5.480 4 C 0.015 3.985 5 C 0.457 3.543 6 O -0.574 6.574 7 O -0.220 6.220 8 C -0.429 4.429 9 H 0.088 0.912 10 C -0.005 4.005 11 N -0.895 5.895 12 Si 1.027 2.973 13 H -0.258 1.258 14 H -0.256 1.256 15 H -0.258 1.258 16 C -0.242 4.242 17 S 0.321 5.679 18 H 0.103 0.897 19 H 0.120 0.880 20 H 0.079 0.921 21 H 0.282 0.718 22 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 -13.559 -0.021 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.274 4.274 3 N -0.196 5.196 4 C -0.118 4.118 5 C 0.304 3.696 6 O -0.474 6.474 7 O -0.126 6.126 8 C -0.505 4.505 9 H 0.105 0.895 10 C -0.206 4.206 11 N -0.531 5.531 12 Si 0.844 3.156 13 H -0.183 1.183 14 H -0.180 1.180 15 H -0.182 1.182 16 C -0.385 4.385 17 S 0.579 5.421 18 H 0.122 0.878 19 H 0.139 0.861 20 H 0.097 0.903 21 H 0.091 0.909 22 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.454 -13.947 -0.017 15.368 hybrid contribution 1.450 1.614 -0.011 2.170 sum -5.004 -12.333 -0.028 13.310 Atomic orbital electron populations 1.20695 0.81835 1.05611 1.05482 1.28031 1.04417 0.91762 1.03161 1.67021 1.03210 1.33640 1.15773 1.19344 0.89436 0.91819 1.11204 1.20526 0.86873 0.83780 0.78419 1.90591 1.18437 1.85030 1.53305 1.84061 1.39589 1.13933 1.75026 1.21643 0.88358 0.85274 1.55197 0.89483 1.26783 1.00658 0.99001 0.94140 1.70132 1.18167 1.19624 1.45199 0.84577 0.75885 0.75065 0.80041 1.18252 1.17968 1.18242 1.26868 1.08827 0.95956 1.06799 1.81881 0.89919 1.07617 1.62730 0.87825 0.86145 0.90253 0.90867 0.78611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.46 71.24 0.74 -0.70 14 2 C 0.01 0.16 7.34 88.58 0.65 0.81 14 3 N -0.48 -20.92 10.60 -180.89 -1.92 -22.84 14 4 C 0.01 0.69 6.71 40.53 0.27 0.96 14 5 C 0.46 26.71 7.88 70.14 0.55 27.27 14 6 O -0.57 -34.47 15.96 19.58 0.31 -34.16 14 7 O -0.22 -14.58 9.68 10.15 0.10 -14.48 14 8 C -0.43 -27.96 9.65 67.95 0.66 -27.30 14 9 H 0.09 5.63 6.86 -2.91 -0.02 5.61 14 10 C 0.00 -0.28 5.49 84.88 0.47 0.19 14 11 N -0.90 -55.94 13.67 21.63 0.30 -55.64 14 12 Si 1.03 44.95 29.55 68.60 2.03 46.98 14 13 H -0.26 -10.79 7.11 99.48 0.71 -10.08 14 14 H -0.26 -10.20 7.11 99.48 0.71 -9.49 14 15 H -0.26 -10.78 7.11 99.48 0.71 -10.08 14 16 C -0.24 -8.27 10.62 67.15 0.71 -7.55 14 17 S 0.32 7.01 22.91 -56.49 -1.29 5.72 14 18 H 0.10 1.62 8.14 -2.39 -0.02 1.60 14 19 H 0.12 1.25 8.14 -2.39 -0.02 1.23 14 20 H 0.08 1.74 8.14 -2.38 -0.02 1.72 14 21 H 0.28 15.79 8.31 -92.70 -0.77 15.02 14 22 H 0.20 6.07 8.03 -2.91 -0.02 6.05 14 Total: -1.00 -84.00 229.46 4.83 -79.17 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: 1.25 Total: 1.58 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 4.05 Total: -6.32 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -1.62 Total: -78.49 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: 0.41 Total: -48.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -1.29 Total: 5.72 kcal Total: -84.00 4.83 -79.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306224241.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.585 kcal (2) G-P(sol) polarization free energy of solvation -84.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds