Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30535 * 1 3 3 Si 1.86804 * 120.00010 * 2 1 4 4 H 1.48493 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46919 * 299.99834 * 3 2 1 6 6 H 1.48500 * 109.47071 * 59.99285 * 3 2 1 7 7 C 1.40353 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.41831 * 119.99555 * 0.02562 * 7 2 1 10 10 O 1.21757 * 120.00642 * 6.74150 * 9 7 2 11 11 C 1.47837 * 119.99689 * 186.73741 * 9 7 2 12 12 C 1.40273 * 120.97310 * 265.42873 * 11 9 7 13 13 F 1.35102 * 120.53334 * 0.26061 * 12 11 9 14 14 C 1.38354 * 118.94122 * 179.97438 * 12 11 9 15 15 N 1.31813 * 120.94328 * 0.03450 * 14 12 11 16 16 C 1.31815 * 122.17027 * 359.96917 * 15 14 12 17 17 C 1.38342 * 120.94263 * 0.02562 * 16 15 14 18 18 F 1.35100 * 120.52596 * 179.97438 * 17 16 15 19 19 H 0.96998 * 119.99685 * 0.02562 * 1 2 3 20 20 H 1.08000 * 119.52657 * 180.02562 * 14 12 11 21 21 H 1.07999 * 119.52786 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 3.6993 1.3464 0.0006 5 1 1.8806 2.3964 -1.2125 6 1 1.8805 2.3965 1.2124 7 6 2.0072 -1.2155 0.0005 8 1 3.0871 -1.2155 0.0010 9 6 1.2980 -2.4437 0.0005 10 8 0.0868 -2.4475 -0.1237 11 6 2.0295 -3.7196 0.1513 12 6 2.4262 -4.4612 -0.9712 13 9 2.1510 -4.0196 -2.2180 14 6 3.1092 -5.6494 -0.7814 15 7 3.3865 -6.0855 0.4311 16 6 3.0331 -5.4216 1.5137 17 6 2.3470 -4.2239 1.4213 18 9 1.9884 -3.5507 2.5364 19 1 -0.4849 0.8401 -0.0004 20 1 3.4195 -6.2278 -1.6391 21 1 3.2820 -5.8188 2.4866 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306337654.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = -98.891805 kcal Electronic energy + Delta-G solvation = -13608.661157 eV Core-core repulsion = 10699.754500 eV Total energy + Delta-G solvation = -2908.906657 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -48.47945 -48.44117 -39.43005 -36.77685 -32.91093 -31.70131 -30.31167 -27.24414 -24.20785 -23.00012 -20.41359 -17.67640 -17.48565 -17.15255 -16.02097 -15.60713 -15.33265 -15.07727 -14.80056 -13.90821 -13.32919 -13.30929 -13.02966 -12.75817 -12.22058 -11.63685 -11.42939 -10.95419 -10.67803 -10.50025 -9.68577 -9.13047 -8.94773 -8.56778 -7.81585 -6.53321 -5.15148 1.11821 1.32452 2.94135 3.05423 3.11011 3.77567 3.84125 3.90508 4.19910 4.49544 4.63768 4.92025 5.22756 5.40349 5.44783 6.15621 6.20419 6.22773 6.92730 7.06182 7.83783 7.92819 8.47646 8.59859 9.99423 10.27074 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.037949 B = 0.011068 C = 0.010084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.663656 B = 2529.132622 C = 2775.903593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.081 3.919 3 Si 0.914 3.086 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.390 3.610 10 O -0.521 6.521 11 C -0.116 4.116 12 C 0.089 3.911 13 F -0.118 7.118 14 C 0.051 3.949 15 N -0.446 5.446 16 C 0.051 3.949 17 C 0.091 3.909 18 F -0.117 7.117 19 H 0.278 0.722 20 H 0.169 0.831 21 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.331 -4.945 0.819 8.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.541 4.541 8 H 0.093 0.907 9 C 0.284 3.716 10 O -0.409 6.409 11 C -0.127 4.127 12 C 0.067 3.933 13 F -0.096 7.096 14 C -0.107 4.107 15 N -0.154 5.154 16 C -0.107 4.107 17 C 0.069 3.931 18 F -0.095 7.095 19 H 0.089 0.911 20 H 0.186 0.814 21 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.985 -5.646 0.848 8.271 hybrid contribution -0.017 1.708 -0.089 1.711 sum 5.967 -3.938 0.760 7.190 Atomic orbital electron populations 1.69933 1.07644 1.28646 1.29732 1.26001 0.94753 1.01181 0.92413 0.86179 0.80776 0.80509 0.78770 1.18202 1.19519 1.19529 1.20798 0.94956 0.90764 1.47562 0.90703 1.17988 0.88518 0.84437 0.80653 1.90576 1.14566 1.87188 1.48582 1.22736 0.97844 1.01258 0.90857 1.18731 0.99928 0.94523 0.80128 1.91536 1.91543 1.89165 1.37380 1.22740 0.98372 0.93565 0.96056 1.67541 1.18297 1.31800 0.97756 1.22743 0.97971 0.91375 0.98659 1.18708 0.99331 0.92481 0.82560 1.91541 1.89503 1.79472 1.48978 0.91059 0.81404 0.81384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.84 11.76 55.57 0.65 -20.19 14 2 C 0.08 2.17 5.50 -17.31 -0.10 2.07 14 3 Si 0.91 19.14 29.56 -169.99 -5.03 14.11 14 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 14 5 H -0.27 -5.50 7.11 56.52 0.40 -5.09 14 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 14 7 C -0.51 -14.18 9.24 -37.41 -0.35 -14.52 14 8 H 0.07 1.93 7.85 -52.49 -0.41 1.52 14 9 C 0.39 11.14 5.85 -34.28 -0.20 10.94 14 10 O -0.52 -16.84 15.69 5.14 0.08 -16.75 14 11 C -0.12 -2.73 5.56 -104.44 -0.58 -3.31 14 12 C 0.09 1.81 7.34 -38.77 -0.28 1.53 14 13 F -0.12 -2.50 16.92 2.25 0.04 -2.47 14 14 C 0.05 0.84 11.16 -17.52 -0.20 0.65 14 15 N -0.45 -7.38 10.33 -13.21 -0.14 -7.52 14 16 C 0.05 0.84 11.16 -17.52 -0.20 0.64 14 17 C 0.09 1.86 7.34 -38.78 -0.28 1.58 14 18 F -0.12 -2.49 16.92 2.25 0.04 -2.45 14 19 H 0.28 7.01 8.29 -40.82 -0.34 6.68 14 20 H 0.17 2.12 8.06 -52.49 -0.42 1.70 14 21 H 0.17 2.12 8.06 -52.49 -0.42 1.70 14 LS Contribution 217.90 15.07 3.28 3.28 Total: -1.00 -32.20 217.90 -3.64 -35.84 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: -0.39 Total: -3.43 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.18 Total: -0.43 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.52 Total: -27.71 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.08 Total: -16.75 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.08 Total: -4.91 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -32.20 -3.64 -35.84 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306337654.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.053 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds