Wall clock time and date at job start Mon Mar 30 2020 02:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46808 * 2 1 4 4 C 1.36934 * 119.99901 * 95.39543 * 3 2 1 5 5 H 1.08004 * 120.00273 * 212.39426 * 4 3 2 6 6 C 1.38816 * 120.00113 * 32.39613 * 4 3 2 7 7 N 1.31620 * 120.00181 * 212.93979 * 6 4 3 8 8 Si 1.86804 * 119.99849 * 32.66224 * 6 4 3 9 9 H 1.48501 * 109.47130 * 95.11677 * 8 6 4 10 10 H 1.48499 * 109.46982 * 215.11858 * 8 6 4 11 11 H 1.48500 * 109.47264 * 335.11746 * 8 6 4 12 12 C 1.46494 * 120.00207 * 275.39916 * 3 2 1 13 13 H 1.09004 * 110.28449 * 0.69531 * 12 3 2 14 14 C 1.54264 * 110.32349 * 238.57714 * 12 3 2 15 15 C 1.54610 * 104.94467 * 241.12602 * 14 12 3 16 16 H 1.09001 * 110.56106 * 94.92253 * 15 14 12 17 17 C 1.53005 * 110.36448 * 217.31121 * 15 14 12 18 18 N 1.48558 * 104.59872 * 336.06880 * 15 14 12 19 19 C 1.46901 * 111.00485 * 159.09569 * 18 15 14 20 20 C 1.48564 * 104.22168 * 39.53622 * 18 15 14 21 21 H 1.09011 * 109.46715 * 184.46580 * 1 2 3 22 22 H 1.08994 * 109.47082 * 304.46088 * 1 2 3 23 23 H 1.08998 * 109.47039 * 64.46717 * 1 2 3 24 24 H 1.08994 * 109.47472 * 239.99963 * 2 1 3 25 25 H 1.09002 * 109.47225 * 119.99973 * 2 1 3 26 26 H 0.97002 * 119.99939 * 179.72888 * 7 6 4 27 27 H 1.09000 * 110.32494 * 359.97438 * 14 12 3 28 28 H 1.08995 * 110.32320 * 122.20572 * 14 12 3 29 29 H 1.08999 * 109.46853 * 176.59963 * 17 15 14 30 30 H 1.08997 * 109.46700 * 296.59831 * 17 15 14 31 31 H 1.08999 * 109.46873 * 56.59888 * 17 15 14 32 32 H 1.09007 * 109.46837 * 304.71123 * 19 18 15 33 33 H 1.09001 * 109.47118 * 64.70361 * 19 18 15 34 34 H 1.08992 * 109.47346 * 184.70705 * 19 18 15 35 35 H 1.09002 * 110.41291 * 201.73740 * 20 18 15 36 36 H 1.09007 * 110.40731 * 79.30168 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3516 1.9896 1.1806 5 1 2.2057 3.0531 1.3003 6 6 2.8771 1.2396 2.2238 7 7 2.6137 1.5704 3.4702 8 14 3.9519 -0.2440 1.8585 9 1 5.3809 0.1576 1.9005 10 1 3.7036 -1.2975 2.8752 11 1 3.6255 -0.7715 0.5092 12 6 2.1499 2.1117 -1.2630 13 1 1.8317 1.4855 -2.0966 14 6 3.6078 2.5732 -1.4657 15 6 3.5328 4.1163 -1.5263 16 1 3.7267 4.5479 -0.5443 17 6 4.5303 4.6580 -2.5523 18 7 2.1402 4.4070 -1.9541 19 6 1.7537 5.7775 -1.5933 20 6 1.3175 3.4111 -1.2203 21 1 -0.3633 -1.0247 0.0800 22 1 -0.3633 0.5815 0.8473 23 1 -0.3633 0.4429 -0.9273 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.9777 1.0439 4.1991 27 1 4.2255 2.2567 -0.6252 28 1 4.0046 2.1751 -2.3995 29 1 4.4232 5.7401 -2.6268 30 1 5.5447 4.4141 -2.2365 31 1 4.3336 4.2055 -3.5242 32 1 1.9000 5.9265 -0.5234 33 1 2.3699 6.4864 -2.1464 34 1 0.7046 5.9366 -1.8423 35 1 0.3601 3.2660 -1.7208 36 1 1.1640 3.7305 -0.1894 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306406074.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:38 Heat of formation + Delta-G solvation = 31.415103 kcal Electronic energy + Delta-G solvation = -15294.630271 eV Core-core repulsion = 13007.679606 eV Total energy + Delta-G solvation = -2286.950665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.75278 -35.61999 -31.82106 -31.37867 -30.70793 -28.18744 -25.38802 -24.73200 -23.43087 -21.56247 -19.86385 -19.18158 -16.41868 -15.61602 -15.18725 -14.49639 -14.15181 -13.82804 -13.34763 -13.04647 -12.84138 -12.28257 -12.09362 -12.02069 -11.75335 -11.54068 -11.21269 -10.85663 -10.78792 -10.67943 -10.51118 -10.40467 -10.09682 -9.90858 -9.67150 -9.23536 -8.45421 -7.97425 -6.85327 -6.04473 -3.29434 3.36639 3.49588 3.54087 4.46128 4.56848 5.01060 5.24817 5.35933 5.40974 5.63672 5.81563 5.84317 5.92062 5.96472 6.00984 6.11251 6.17897 6.21986 6.30885 6.37149 6.40551 6.45869 6.57313 6.65018 6.74376 6.81413 6.90068 7.01290 7.14923 7.39485 7.55286 8.03673 8.36470 9.02883 9.75773 10.17199 11.11291 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.011556 C = 0.010553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.886611 B = 2422.361110 C = 2652.644480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.145 3.855 3 N -0.598 5.598 4 C -0.267 4.267 5 H 0.075 0.925 6 C 0.041 3.959 7 N -0.886 5.886 8 Si 0.847 3.153 9 H -0.294 1.294 10 H -0.295 1.295 11 H -0.258 1.258 12 C 0.174 3.826 13 H 0.061 0.939 14 C -0.130 4.130 15 C 0.061 3.939 16 H 0.052 0.948 17 C -0.132 4.132 18 N -0.516 5.516 19 C 0.016 3.984 20 C 0.021 3.979 21 H 0.037 0.963 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.262 0.738 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 2.582 -9.924 10.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.019 3.981 3 N -0.320 5.320 4 C -0.394 4.394 5 H 0.093 0.907 6 C -0.160 4.160 7 N -0.526 5.526 8 Si 0.675 3.325 9 H -0.221 1.221 10 H -0.222 1.222 11 H -0.183 1.183 12 C 0.066 3.934 13 H 0.079 0.921 14 C -0.170 4.170 15 C -0.048 4.048 16 H 0.070 0.930 17 C -0.190 4.190 18 N -0.241 5.241 19 C -0.133 4.133 20 C -0.108 4.108 21 H 0.056 0.944 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.207 2.509 -10.305 10.608 hybrid contribution 0.747 -0.617 0.954 1.359 sum 0.540 1.893 -9.351 9.556 Atomic orbital electron populations 1.22326 0.99410 0.99472 1.01336 1.21174 0.91913 0.86176 0.98820 1.44292 1.74237 1.11148 1.02296 1.18522 1.37683 0.94875 0.88361 0.90700 1.25336 0.98544 0.97370 0.94759 1.70045 1.42702 1.41207 0.98664 0.87485 0.82552 0.83818 0.78679 1.22135 1.22211 1.18281 1.21019 0.92323 0.91741 0.88306 0.92108 1.22861 0.99755 0.93232 1.01123 1.22616 0.88923 0.96713 0.96526 0.92996 1.21702 0.97945 1.00051 0.99302 1.65323 1.03157 1.02482 1.53133 1.22440 1.00827 0.91289 0.98725 1.23577 0.96516 0.93375 0.97348 0.94415 0.92194 0.94107 0.94901 0.92756 0.92837 0.90129 0.92654 0.93523 0.92763 0.92340 0.95475 0.92115 0.92032 0.91699 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.23 37.16 0.38 -2.79 16 2 C 0.14 3.13 4.46 -4.04 -0.02 3.12 16 3 N -0.60 -13.81 2.12 -164.09 -0.35 -14.16 16 4 C -0.27 -7.16 8.36 -15.06 -0.13 -7.28 16 5 H 0.08 2.19 6.81 -52.48 -0.36 1.83 16 6 C 0.04 1.15 5.08 -17.43 -0.09 1.06 16 7 N -0.89 -26.54 13.97 55.49 0.78 -25.76 16 8 Si 0.85 21.23 26.14 -169.99 -4.44 16.79 16 9 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.26 -6.12 5.54 56.52 0.31 -5.81 16 12 C 0.17 3.48 3.58 -66.55 -0.24 3.25 16 13 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 14 C -0.13 -2.47 6.03 -25.22 -0.15 -2.62 16 15 C 0.06 1.06 2.89 -65.95 -0.19 0.87 16 16 H 0.05 1.00 7.90 -51.93 -0.41 0.59 16 17 C -0.13 -1.89 9.35 37.16 0.35 -1.54 16 18 N -0.52 -8.88 5.34 -230.20 -1.23 -10.11 16 19 C 0.02 0.25 9.42 60.07 0.57 0.81 16 20 C 0.02 0.40 6.08 -2.18 -0.01 0.39 16 21 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 22 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 25 H 0.05 1.28 3.93 -51.93 -0.20 1.07 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.08 1.74 7.37 -51.93 -0.38 1.36 16 28 H 0.05 0.95 7.85 -51.93 -0.41 0.54 16 29 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.03 0.43 7.97 -51.93 -0.41 0.02 16 33 H 0.06 0.81 7.54 -51.93 -0.39 0.41 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.33 6.17 -51.93 -0.32 1.01 16 LS Contribution 277.14 15.07 4.18 4.18 Total: -1.00 -28.59 277.14 -6.89 -35.48 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.29 Total: -1.68 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 0.47 Total: -4.74 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.80 Total: -50.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.44 Total: 16.79 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.59 -6.89 -35.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306406074.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.896 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds