Wall clock time and date at job start Mon Mar 30 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36944 * 120.00186 * 85.06581 * 3 2 1 5 5 H 1.07991 * 120.00008 * 209.81419 * 4 3 2 6 6 C 1.38809 * 119.99643 * 29.81385 * 4 3 2 7 7 N 1.31622 * 120.00232 * 40.65653 * 6 4 3 8 8 Si 1.86799 * 119.99787 * 220.65302 * 6 4 3 9 9 H 1.48502 * 109.47012 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.47055 * 299.99956 * 8 6 4 11 11 H 1.48500 * 109.47271 * 60.00235 * 8 6 4 12 12 C 1.46503 * 120.00109 * 265.05954 * 3 2 1 13 13 H 1.08992 * 110.28933 * 357.87653 * 12 3 2 14 14 C 1.54260 * 110.32011 * 120.00521 * 12 3 2 15 15 C 1.54378 * 105.06134 * 118.90202 * 14 12 3 16 16 H 1.09009 * 110.40680 * 265.07112 * 15 14 12 17 17 C 1.53001 * 110.41560 * 142.63221 * 15 14 12 18 18 N 1.48555 * 104.59565 * 23.84707 * 15 14 12 19 19 C 1.46905 * 110.99803 * 200.96389 * 18 15 14 20 20 C 1.48561 * 104.22095 * 320.51885 * 18 15 14 21 21 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 22 22 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 23 23 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 25 25 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 26 26 H 0.97003 * 119.99646 * 5.83900 * 7 6 4 27 27 H 1.09005 * 110.32176 * 237.79549 * 14 12 3 28 28 H 1.08997 * 110.32662 * 359.97438 * 14 12 3 29 29 H 1.08999 * 109.47220 * 59.99158 * 17 15 14 30 30 H 1.08997 * 109.47440 * 180.02562 * 17 15 14 31 31 H 1.09003 * 109.46859 * 299.99921 * 17 15 14 32 32 H 1.08993 * 109.47385 * 60.00297 * 19 18 15 33 33 H 1.09001 * 109.47008 * 180.02562 * 19 18 15 34 34 H 1.08999 * 109.46920 * 300.00197 * 19 18 15 35 35 H 1.08996 * 110.41475 * 280.70292 * 20 18 15 36 36 H 1.09008 * 110.40737 * 158.26353 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1502 2.0609 1.1816 5 1 2.0326 3.1341 1.2032 6 6 2.4352 1.3701 2.3513 7 7 3.3034 0.3809 2.3367 8 14 1.5867 1.8445 3.9464 9 1 2.0614 0.9608 5.0414 10 1 1.9069 3.2565 4.2765 11 1 0.1177 1.6936 3.7896 12 6 2.3653 2.0355 -1.2640 13 1 2.2371 1.3429 -2.0958 14 6 1.4949 3.2917 -1.4737 15 6 2.4945 4.4666 -1.5357 16 1 2.5994 4.9285 -0.5539 17 6 2.0394 5.5007 -2.5674 18 7 3.7769 3.8453 -1.9556 19 6 4.9179 4.6965 -1.5928 20 6 3.8175 2.5571 -1.2167 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8065 0.1891 1.5298 27 1 0.9408 3.2164 -2.4094 28 1 0.8092 3.4213 -0.6365 29 1 1.0579 5.8841 -2.2889 30 1 2.7553 6.3220 -2.5989 31 1 1.9811 5.0322 -3.5499 32 1 4.9360 4.8389 -0.5124 33 1 5.8439 4.2183 -1.9121 34 1 4.8205 5.6640 -2.0853 35 1 4.1295 2.7202 -0.1852 36 1 4.4896 1.8560 -1.7117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306406075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:40 Heat of formation + Delta-G solvation = 20.581836 kcal Electronic energy + Delta-G solvation = -15283.536108 eV Core-core repulsion = 12996.115678 eV Total energy + Delta-G solvation = -2287.420430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.70924 -35.58595 -31.76475 -31.19492 -30.63023 -27.71391 -25.36071 -24.57675 -23.47433 -20.99004 -19.85456 -19.36985 -16.84941 -15.58822 -14.86221 -14.23348 -13.89358 -13.74179 -13.59435 -13.08520 -12.57490 -12.45785 -12.15667 -11.90851 -11.60846 -11.13896 -11.02616 -10.74574 -10.68603 -10.52116 -10.43649 -10.24680 -10.10368 -9.99458 -9.71632 -9.42977 -8.19637 -7.97053 -6.83458 -6.13282 -3.19305 3.48768 3.54849 3.71396 4.46954 4.66206 5.14447 5.28101 5.33597 5.51864 5.62656 5.78735 5.86692 5.95316 5.98730 6.09462 6.15267 6.17803 6.26389 6.38270 6.42558 6.49803 6.54807 6.65675 6.72482 6.75776 6.89262 7.01997 7.14536 7.35308 7.41742 7.58895 8.15919 8.56479 9.13899 9.86954 10.34406 11.07711 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029540 B = 0.011066 C = 0.010039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.647326 B = 2529.664269 C = 2788.346714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 N -0.585 5.585 4 C -0.361 4.361 5 H 0.051 0.949 6 C -0.009 4.009 7 N -0.882 5.882 8 Si 1.040 2.960 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.293 1.293 12 C 0.172 3.828 13 H 0.055 0.945 14 C -0.128 4.128 15 C 0.061 3.939 16 H 0.047 0.953 17 C -0.132 4.132 18 N -0.516 5.516 19 C 0.017 3.983 20 C 0.022 3.978 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.034 0.966 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.269 0.731 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 5.152 -7.080 8.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 N -0.306 5.306 4 C -0.489 4.489 5 H 0.068 0.932 6 C -0.214 4.214 7 N -0.519 5.519 8 Si 0.869 3.131 9 H -0.213 1.213 10 H -0.221 1.221 11 H -0.220 1.220 12 C 0.063 3.937 13 H 0.074 0.926 14 C -0.168 4.168 15 C -0.048 4.048 16 H 0.066 0.934 17 C -0.190 4.190 18 N -0.241 5.241 19 C -0.133 4.133 20 C -0.107 4.107 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.661 4.651 -6.041 7.803 hybrid contribution 0.218 0.725 -0.669 1.010 sum -1.443 5.376 -6.709 8.718 Atomic orbital electron populations 1.22203 0.99806 0.98762 1.01001 1.20870 0.91751 0.86481 0.99948 1.44138 1.73422 1.11557 1.01525 1.19500 1.50220 0.93112 0.86074 0.93153 1.25585 0.96669 0.98444 1.00726 1.70800 1.17235 1.33982 1.29858 0.83905 0.76849 0.75513 0.76791 1.21306 1.22051 1.22020 1.21065 0.90866 0.92745 0.88975 0.92645 1.22813 0.97880 0.95299 1.00804 1.22556 0.90665 0.95271 0.96288 0.93448 1.21701 0.99930 0.97931 0.99413 1.65343 1.01434 1.04184 1.53116 1.22437 0.94771 0.97415 0.98637 1.23589 0.99592 0.90069 0.97441 0.92762 0.94478 0.94730 0.95447 0.91276 0.92049 0.92830 0.90568 0.92808 0.93587 0.92263 0.95540 0.92027 0.92249 0.91728 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.21 37.16 0.38 -2.85 16 2 C 0.14 3.11 5.91 -4.04 -0.02 3.08 16 3 N -0.59 -14.06 2.33 -164.10 -0.38 -14.44 16 4 C -0.36 -9.62 7.34 -15.06 -0.11 -9.73 16 5 H 0.05 1.40 7.50 -52.49 -0.39 1.01 16 6 C -0.01 -0.24 4.52 -17.43 -0.08 -0.32 16 7 N -0.88 -25.53 12.21 55.49 0.68 -24.85 16 8 Si 1.04 24.87 30.05 -169.99 -5.11 19.76 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.17 3.63 3.59 -66.55 -0.24 3.39 16 13 H 0.06 1.13 7.77 -51.93 -0.40 0.73 16 14 C -0.13 -2.46 5.89 -25.35 -0.15 -2.61 16 15 C 0.06 1.08 2.89 -66.07 -0.19 0.89 16 16 H 0.05 0.92 7.97 -51.92 -0.41 0.51 16 17 C -0.13 -1.90 9.31 37.16 0.35 -1.56 16 18 N -0.52 -9.37 5.34 -230.35 -1.23 -10.60 16 19 C 0.02 0.27 9.45 60.07 0.57 0.83 16 20 C 0.02 0.46 6.08 -2.18 -0.01 0.45 16 21 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.03 0.58 7.83 -51.93 -0.41 0.17 16 25 H 0.07 1.78 5.70 -51.93 -0.30 1.49 16 26 H 0.27 7.90 8.11 -40.82 -0.33 7.57 16 27 H 0.05 0.94 7.86 -51.93 -0.41 0.53 16 28 H 0.08 1.61 7.21 -51.93 -0.37 1.24 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.45 7.97 -51.93 -0.41 0.03 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.83 7.47 -51.93 -0.39 0.44 16 35 H 0.06 1.55 6.73 -51.93 -0.35 1.20 16 36 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 LS Contribution 283.09 15.07 4.27 4.27 Total: -1.00 -27.72 283.09 -7.61 -35.33 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.32 Total: -1.06 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 0.49 Total: -8.41 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.94 Total: -49.89 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.11 Total: 19.76 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.72 -7.61 -35.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306406075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.916 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds