Wall clock time and date at job start Mon Mar 30 2020 02:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36944 * 120.00186 * 85.06581 * 3 2 1 5 5 H 1.07991 * 120.00008 * 209.81419 * 4 3 2 6 6 C 1.38809 * 119.99643 * 29.81385 * 4 3 2 7 7 N 1.31622 * 120.00232 * 40.65653 * 6 4 3 8 8 Si 1.86799 * 119.99787 * 220.65302 * 6 4 3 9 9 H 1.48502 * 109.47012 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.47055 * 299.99956 * 8 6 4 11 11 H 1.48500 * 109.47271 * 60.00235 * 8 6 4 12 12 C 1.46503 * 120.00109 * 265.05954 * 3 2 1 13 13 H 1.08992 * 110.28933 * 357.87653 * 12 3 2 14 14 C 1.54260 * 110.32011 * 120.00521 * 12 3 2 15 15 C 1.54378 * 105.06134 * 118.90202 * 14 12 3 16 16 H 1.09009 * 110.40680 * 265.07112 * 15 14 12 17 17 C 1.53001 * 110.41560 * 142.63221 * 15 14 12 18 18 N 1.48555 * 104.59565 * 23.84707 * 15 14 12 19 19 C 1.46905 * 110.99803 * 200.96389 * 18 15 14 20 20 C 1.48561 * 104.22095 * 320.51885 * 18 15 14 21 21 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 22 22 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 23 23 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 25 25 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 26 26 H 0.97003 * 119.99646 * 5.83900 * 7 6 4 27 27 H 1.09005 * 110.32176 * 237.79549 * 14 12 3 28 28 H 1.08997 * 110.32662 * 359.97438 * 14 12 3 29 29 H 1.08999 * 109.47220 * 59.99158 * 17 15 14 30 30 H 1.08997 * 109.47440 * 180.02562 * 17 15 14 31 31 H 1.09003 * 109.46859 * 299.99921 * 17 15 14 32 32 H 1.08993 * 109.47385 * 60.00297 * 19 18 15 33 33 H 1.09001 * 109.47008 * 180.02562 * 19 18 15 34 34 H 1.08999 * 109.46920 * 300.00197 * 19 18 15 35 35 H 1.08996 * 110.41475 * 280.70292 * 20 18 15 36 36 H 1.09008 * 110.40737 * 158.26353 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1502 2.0609 1.1816 5 1 2.0326 3.1341 1.2032 6 6 2.4352 1.3701 2.3513 7 7 3.3034 0.3809 2.3367 8 14 1.5867 1.8445 3.9464 9 1 2.0614 0.9608 5.0414 10 1 1.9069 3.2565 4.2765 11 1 0.1177 1.6936 3.7896 12 6 2.3653 2.0355 -1.2640 13 1 2.2371 1.3429 -2.0958 14 6 1.4949 3.2917 -1.4737 15 6 2.4945 4.4666 -1.5357 16 1 2.5994 4.9285 -0.5539 17 6 2.0394 5.5007 -2.5674 18 7 3.7769 3.8453 -1.9556 19 6 4.9179 4.6965 -1.5928 20 6 3.8175 2.5571 -1.2167 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8065 0.1891 1.5298 27 1 0.9408 3.2164 -2.4094 28 1 0.8092 3.4213 -0.6365 29 1 1.0579 5.8841 -2.2889 30 1 2.7553 6.3220 -2.5989 31 1 1.9811 5.0322 -3.5499 32 1 4.9360 4.8389 -0.5124 33 1 5.8439 4.2183 -1.9121 34 1 4.8205 5.6640 -2.0853 35 1 4.1295 2.7202 -0.1852 36 1 4.4896 1.8560 -1.7117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306406075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:39 Heat of formation + Delta-G solvation = 3.494254 kcal Electronic energy + Delta-G solvation = -15284.277082 eV Core-core repulsion = 12996.115678 eV Total energy + Delta-G solvation = -2288.161403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29448 -37.39282 -33.65947 -32.72513 -32.21765 -29.47762 -26.81951 -26.35166 -25.12355 -22.76589 -21.56908 -20.94022 -18.81739 -17.26135 -16.51785 -15.80470 -15.61525 -15.43204 -15.33722 -14.67494 -14.27542 -14.08806 -13.60633 -13.38486 -12.95871 -12.92709 -12.64097 -12.56342 -12.19599 -12.08491 -12.03689 -11.96846 -11.90586 -11.78652 -11.42157 -11.27049 -10.25857 -9.51956 -8.84630 -8.23476 -5.29479 1.55405 1.60727 1.80404 2.63278 3.01370 3.11599 3.65079 3.79995 3.98034 4.20812 4.33858 4.40675 4.46992 4.54799 4.59913 4.68773 4.77082 4.82321 4.84554 4.91669 4.94673 5.01671 5.02295 5.14225 5.22089 5.36449 5.37500 5.40873 5.56915 5.84903 6.04491 6.12140 6.39365 7.13098 7.86343 8.30777 8.92133 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029540 B = 0.011066 C = 0.010039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.647326 B = 2529.664269 C = 2788.346714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.133 3.867 3 N -0.597 5.597 4 C -0.348 4.348 5 H 0.034 0.966 6 C -0.056 4.056 7 N -0.908 5.908 8 Si 1.084 2.916 9 H -0.293 1.293 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.163 3.837 13 H 0.067 0.933 14 C -0.120 4.120 15 C 0.060 3.940 16 H 0.024 0.976 17 C -0.122 4.122 18 N -0.509 5.509 19 C 0.016 3.984 20 C 0.032 3.968 21 H 0.031 0.969 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.254 0.746 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.023 0.977 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 6.165 -8.563 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.007 3.993 3 N -0.318 5.318 4 C -0.477 4.477 5 H 0.051 0.949 6 C -0.257 4.257 7 N -0.547 5.547 8 Si 0.910 3.090 9 H -0.219 1.219 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.055 3.945 13 H 0.086 0.914 14 C -0.160 4.160 15 C -0.048 4.048 16 H 0.042 0.958 17 C -0.180 4.180 18 N -0.234 5.234 19 C -0.132 4.132 20 C -0.098 4.098 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.566 5.685 -7.551 9.794 hybrid contribution 0.527 0.428 -0.294 0.740 sum -2.039 6.113 -7.844 10.152 Atomic orbital electron populations 1.22040 0.97569 1.00339 1.00512 1.20893 0.93482 0.85720 0.99213 1.44307 1.73815 1.11952 1.01766 1.19469 1.48472 0.92494 0.87303 0.94851 1.26618 0.96965 0.98694 1.03383 1.70915 1.18870 1.35778 1.29096 0.83283 0.76362 0.75606 0.73713 1.21937 1.20835 1.20902 1.21286 0.91459 0.93712 0.88010 0.91446 1.22700 0.97556 0.94764 1.00935 1.22607 0.90153 0.95527 0.96528 0.95829 1.21632 1.00931 0.97122 0.98306 1.65402 1.02406 1.03516 1.52048 1.22517 0.94407 0.98437 0.97879 1.23379 0.99311 0.91808 0.95341 0.94944 0.93104 0.92136 0.93822 0.94414 0.93668 0.90458 0.92905 0.91474 0.92172 0.91463 0.97255 0.90907 0.89536 0.95895 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 10.21 71.98 0.74 -4.99 16 2 C 0.13 6.05 5.91 86.38 0.51 6.56 16 3 N -0.60 -28.85 2.33 -673.09 -1.57 -30.42 16 4 C -0.35 -18.92 7.34 84.03 0.62 -18.30 16 5 H 0.03 1.92 7.50 -2.92 -0.02 1.89 16 6 C -0.06 -3.14 4.52 84.86 0.38 -2.75 16 7 N -0.91 -54.03 12.21 21.65 0.26 -53.77 16 8 Si 1.08 50.96 30.05 68.60 2.06 53.02 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 C 0.16 6.77 3.59 45.88 0.16 6.93 16 13 H 0.07 2.63 7.77 -2.39 -0.02 2.61 16 14 C -0.12 -4.43 5.89 31.49 0.19 -4.24 16 15 C 0.06 2.05 2.89 45.06 0.13 2.18 16 16 H 0.02 0.91 7.97 -2.38 -0.02 0.90 16 17 C -0.12 -3.12 9.31 71.98 0.67 -2.45 16 18 N -0.51 -17.72 5.34 -882.68 -4.71 -22.44 16 19 C 0.02 0.50 9.45 127.69 1.21 1.71 16 20 C 0.03 1.30 6.08 86.45 0.53 1.83 16 21 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.04 1.81 7.83 -2.39 -0.02 1.79 16 25 H 0.04 1.98 5.70 -2.39 -0.01 1.97 16 26 H 0.25 15.50 8.11 -92.71 -0.75 14.75 16 27 H 0.08 2.48 7.86 -2.38 -0.02 2.46 16 28 H 0.05 2.20 7.21 -2.39 -0.02 2.18 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.37 7.54 -2.39 -0.02 1.36 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.01 0.30 7.97 -2.39 -0.02 0.28 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 2.16 7.47 -2.39 -0.02 2.14 16 35 H 0.02 1.13 6.73 -2.39 -0.02 1.12 16 36 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -60.14 283.09 2.20 -57.94 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.03 Total: 9.18 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 5.13 Total: -13.51 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -6.02 Total: -106.62 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.06 Total: 53.02 kcal Total: -60.14 2.20 -57.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306406075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.430 kcal (2) G-P(sol) polarization free energy of solvation -60.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds