Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48506 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46905 * 299.99530 * 3 2 1 6 6 H 1.48494 * 109.47159 * 59.99796 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21413 * 120.00306 * 0.28129 * 11 10 9 13 13 C 1.48916 * 120.00205 * 180.27708 * 11 10 9 14 14 N 1.32131 * 126.26829 * 0.03042 * 13 11 10 15 15 C 1.34404 * 105.78055 * 180.02562 * 14 13 11 16 16 O 1.21889 * 126.49888 * 179.97438 * 15 14 13 17 17 O 1.34071 * 107.00530 * 359.97438 * 15 14 13 18 18 N 1.21331 * 109.70334 * 359.70673 * 17 15 14 19 19 H 0.97004 * 124.97418 * 180.26025 * 18 17 15 20 20 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 22 22 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 23 23 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5600 -5.1053 0.0061 13 6 2.7213 -6.0153 0.0124 14 7 4.0390 -5.9172 0.0137 15 6 4.4995 -7.1799 0.0193 16 8 5.6684 -7.5252 0.0217 17 8 3.4294 -7.9875 0.0217 18 7 2.4147 -7.3222 0.0239 19 1 1.5139 -7.6820 0.0296 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 3.1566 -3.4355 0.0009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306462216.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = -20.738949 kcal Electronic energy + Delta-G solvation = -13471.747416 eV Core-core repulsion = 10709.609988 eV Total energy + Delta-G solvation = -2762.137428 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.058 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.95723 -40.90320 -39.45658 -37.03981 -36.42926 -34.43858 -33.55919 -29.83370 -27.03336 -25.33751 -24.09798 -22.34924 -21.31951 -19.87572 -19.70327 -18.09476 -17.70860 -17.11566 -16.74001 -16.51572 -16.25196 -15.09329 -14.95389 -14.17741 -14.06749 -13.17064 -13.15803 -12.93749 -12.73738 -12.27576 -12.07956 -11.66385 -11.44474 -10.83409 -10.49173 -10.08221 -8.28234 -6.42309 -0.84988 0.39502 1.14511 1.30525 1.47705 1.50214 1.62310 1.79872 2.37272 2.43950 2.72593 3.08675 3.56978 4.21888 5.01273 5.15283 5.21240 5.23360 5.56351 5.82038 6.12064 6.38044 6.58557 6.63633 6.91207 7.29932 8.83088 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.055371 B = 0.006482 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.557325 B = 4318.743939 C = 4809.148045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.976 3.024 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.261 3.739 10 N -0.660 5.660 11 C 0.586 3.414 12 O -0.541 6.541 13 C 0.342 3.658 14 N -0.540 5.540 15 C 0.557 3.443 16 O -0.504 6.504 17 O -0.049 6.049 18 N -0.438 5.438 19 H 0.498 0.502 20 H 0.270 0.730 21 H 0.015 0.985 22 H 0.015 0.985 23 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -10.613 0.040 10.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.596 4.596 8 H 0.099 0.901 9 C 0.140 3.860 10 N -0.309 5.309 11 C 0.365 3.635 12 O -0.418 6.418 13 C 0.068 3.932 14 N -0.307 5.307 15 C 0.306 3.694 16 O -0.387 6.387 17 O -0.073 6.073 18 N -0.105 5.105 19 H 0.359 0.641 20 H 0.079 0.921 21 H 0.033 0.967 22 H 0.033 0.967 23 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.492 -10.619 0.042 10.908 hybrid contribution -0.062 0.068 0.003 0.092 sum 2.431 -10.551 0.045 10.827 Atomic orbital electron populations 1.70077 1.07773 1.28570 1.49766 1.25848 0.95724 1.03259 0.93932 0.85227 0.79086 0.78037 0.77633 1.18251 1.20551 1.20563 1.21604 0.94417 0.90523 1.53093 0.90083 1.18967 0.88118 0.82393 0.96494 1.46181 1.13048 1.04150 1.67553 1.16724 0.85267 0.81771 0.79748 1.90857 1.14970 1.84069 1.51895 1.24872 0.92192 0.87391 0.88754 1.73527 1.05164 1.19330 1.32657 1.21767 0.85735 0.81747 0.80143 1.91160 1.11703 1.79325 1.56468 1.85256 1.11010 1.31186 1.79856 1.42519 1.03507 1.02310 1.62149 0.64143 0.92132 0.96682 0.96675 0.74423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.09 13.29 21.45 0.28 -50.80 14 2 C 0.01 0.67 5.46 84.66 0.46 1.13 14 3 Si 0.98 40.24 29.54 68.60 2.03 42.26 14 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 14 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 14 6 H -0.28 -11.41 7.11 99.48 0.71 -10.70 14 7 C -0.56 -27.80 9.28 25.60 0.24 -27.56 14 8 H 0.08 3.76 7.60 -2.91 -0.02 3.74 14 9 C 0.26 12.32 5.43 85.63 0.46 12.78 14 10 N -0.66 -24.19 5.55 -468.68 -2.60 -26.79 14 11 C 0.59 18.70 7.87 87.11 0.69 19.39 14 12 O -0.54 -19.44 17.10 -3.44 -0.06 -19.50 14 13 C 0.34 8.69 8.03 137.35 1.10 9.79 14 14 N -0.54 -16.13 11.27 -431.86 -4.87 -20.99 14 15 C 0.56 16.78 9.61 129.97 1.25 18.03 14 16 O -0.50 -18.59 18.07 18.17 0.33 -18.26 14 17 O -0.05 -1.07 11.33 93.96 1.06 0.00 14 18 N -0.44 -7.87 6.81 -53.89 -0.37 -8.23 14 19 H 0.50 4.99 8.96 -92.71 -0.83 4.16 14 20 H 0.27 14.01 8.31 -92.71 -0.77 13.23 14 21 H 0.02 0.79 8.14 -2.38 -0.02 0.77 14 22 H 0.02 0.79 8.14 -2.39 -0.02 0.77 14 23 H 0.42 14.06 8.06 -92.71 -0.75 13.32 14 Total: -1.00 -63.31 229.16 -0.28 -63.58 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -0.29 Total: 5.18 kcal Atomic # 6 Polarization: 29.36 SS G_CDS: 4.20 Total: 33.56 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -7.55 Total: -106.82 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: 1.33 Total: -37.77 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -63.31 -0.28 -63.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306462216.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.843 kcal (2) G-P(sol) polarization free energy of solvation -63.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds