Wall clock time and date at job start Mon Mar 30 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30534 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48507 * 109.46604 * 239.99940 * 3 2 1 5 5 H 1.48497 * 109.46863 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47275 * 119.99819 * 3 2 1 7 7 C 1.40336 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.41830 * 119.99658 * 359.97438 * 7 2 1 10 10 O 1.21786 * 120.00224 * 359.97438 * 9 7 2 11 11 C 1.47680 * 120.00015 * 180.02562 * 9 7 2 12 12 C 1.40114 * 120.57269 * 359.97438 * 11 9 7 13 13 C 1.38457 * 118.29040 * 179.97438 * 12 11 9 14 14 F 1.35104 * 120.32876 * 179.97438 * 13 12 11 15 15 C 1.38685 * 119.34810 * 0.02562 * 13 12 11 16 16 N 1.31943 * 121.12401 * 359.97438 * 15 13 12 17 17 C 1.31898 * 121.86864 * 0.02562 * 16 15 13 18 18 F 1.35102 * 119.74008 * 179.97438 * 17 16 15 19 19 H 0.96994 * 120.00302 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.85641 * 0.02562 * 12 11 9 21 21 H 1.08005 * 119.43836 * 179.72239 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.0931 1.6963 -1.2126 5 1 1.2743 2.7464 -0.0006 6 1 3.0930 1.6965 1.2125 7 6 2.0071 -1.2153 0.0005 8 1 3.0870 -1.2153 0.0010 9 6 1.2980 -2.4436 0.0016 10 8 0.0801 -2.4436 0.0026 11 6 2.0364 -3.7225 0.0028 12 6 3.4375 -3.7365 0.0023 13 6 4.0815 -4.9622 0.0039 14 9 5.4311 -5.0237 0.0030 15 6 3.3275 -6.1262 0.0055 16 7 2.0087 -6.0845 0.0059 17 6 1.3480 -4.9429 0.0044 18 9 -0.0030 -4.9504 0.0044 19 1 -0.4850 0.8400 -0.0004 20 1 4.0006 -2.8150 0.0014 21 1 3.8283 -7.0831 0.0022 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306683824.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:45 Heat of formation + Delta-G solvation = -115.586602 kcal Electronic energy + Delta-G solvation = -13438.255198 eV Core-core repulsion = 10528.624600 eV Total energy + Delta-G solvation = -2909.630598 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.034 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -50.01373 -49.96569 -40.96078 -38.65228 -34.87733 -33.90072 -31.48959 -29.11296 -25.86363 -24.52772 -22.17371 -19.28848 -19.14572 -18.42345 -18.07853 -17.32745 -17.01876 -16.48923 -15.70204 -15.46135 -15.34949 -14.85246 -14.39628 -14.20310 -13.70475 -13.65590 -13.34120 -12.74048 -12.49475 -12.10687 -11.17803 -11.09106 -10.91333 -9.83282 -9.72032 -8.43492 -7.18976 -0.50391 -0.18797 1.39753 1.40333 1.56025 1.98714 2.18433 2.43170 2.50778 2.87609 3.50809 3.51229 3.59501 3.69917 4.21332 4.63251 4.70910 4.85040 5.13587 5.48692 5.83443 6.32917 6.58266 6.61546 8.09661 8.38956 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.035034 B = 0.010805 C = 0.008282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.030685 B = 2590.672270 C = 3379.860930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.022 3.978 3 Si 1.000 3.000 4 H -0.248 1.248 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.527 4.527 8 H 0.106 0.894 9 C 0.357 3.643 10 O -0.580 6.580 11 C -0.175 4.175 12 C -0.054 4.054 13 C 0.042 3.958 14 F -0.116 7.116 15 C 0.119 3.881 16 N -0.506 5.506 17 C 0.290 3.710 18 F -0.114 7.114 19 H 0.286 0.714 20 H 0.176 0.824 21 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.163 -4.092 -0.001 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.198 4.198 3 Si 0.818 3.182 4 H -0.172 1.172 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.557 4.557 8 H 0.124 0.876 9 C 0.256 3.744 10 O -0.474 6.474 11 C -0.180 4.180 12 C -0.080 4.080 13 C 0.021 3.979 14 F -0.095 7.095 15 C -0.041 4.041 16 N -0.220 5.220 17 C 0.138 3.862 18 F -0.093 7.093 19 H 0.096 0.904 20 H 0.194 0.806 21 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 9.906 -4.829 0.001 11.020 hybrid contribution 0.193 1.273 -0.001 1.288 sum 10.099 -3.556 0.001 10.707 Atomic orbital electron populations 1.70088 1.10164 1.30456 1.30141 1.27329 0.95512 1.05759 0.91242 0.85018 0.78441 0.73860 0.80908 1.17190 1.19682 1.17185 1.21426 0.96512 0.91461 1.46309 0.87596 1.18620 0.88465 0.87174 0.80153 1.90548 1.16529 1.88873 1.51411 1.22436 0.95677 0.96895 1.02942 1.22039 0.92237 0.99445 0.94252 1.18529 0.78530 0.94787 1.06084 1.91549 1.26924 1.97051 1.93938 1.23338 0.86402 0.99563 0.94763 1.67076 1.11042 1.27718 1.16154 1.18669 0.78717 0.89880 0.98948 1.91605 1.27873 1.96889 1.92906 0.90355 0.80636 0.76097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.56 11.73 21.89 0.26 -44.30 14 2 C 0.02 1.11 5.50 85.40 0.47 1.58 14 3 Si 1.00 36.49 29.56 68.60 2.03 38.52 14 4 H -0.25 -8.43 7.11 99.48 0.71 -7.73 14 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 14 6 H -0.25 -8.43 7.11 99.48 0.71 -7.72 14 7 C -0.53 -27.43 8.87 23.67 0.21 -27.22 14 8 H 0.11 4.64 6.09 -2.91 -0.02 4.62 14 9 C 0.36 20.22 6.92 25.66 0.18 20.39 14 10 O -0.58 -38.28 13.92 -4.62 -0.06 -38.35 14 11 C -0.17 -8.01 5.91 -19.87 -0.12 -8.13 14 12 C -0.05 -1.89 9.53 22.78 0.22 -1.67 14 13 C 0.04 1.21 7.33 22.43 0.16 1.37 14 14 F -0.12 -2.84 17.28 44.97 0.78 -2.06 14 15 C 0.12 3.24 11.16 84.78 0.95 4.19 14 16 N -0.51 -18.66 10.36 -195.28 -2.02 -20.69 14 17 C 0.29 13.12 8.42 85.14 0.72 13.84 14 18 F -0.11 -5.84 15.60 44.97 0.70 -5.14 14 19 H 0.29 14.58 8.29 -92.71 -0.77 13.81 14 20 H 0.18 5.53 6.32 -2.91 -0.02 5.51 14 21 H 0.22 3.71 8.06 -2.91 -0.02 3.68 14 Total: -1.00 -70.22 212.16 5.75 -64.47 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.29 Total: 3.21 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 2.78 Total: 4.35 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -1.77 Total: -64.99 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.06 Total: -38.35 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 1.48 Total: -7.21 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Total: -70.22 5.75 -64.47 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306683824.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.117 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds