Wall clock time and date at job start Mon Mar 30 2020 02:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 120.00414 * 2 1 4 4 H 1.48497 * 109.47088 * 270.00670 * 3 2 1 5 5 H 1.48499 * 109.46646 * 30.00981 * 3 2 1 6 6 H 1.48502 * 109.46972 * 150.00123 * 3 2 1 7 7 C 1.38645 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00225 * 359.97438 * 7 2 1 9 9 O 1.34832 * 119.99983 * 179.97438 * 7 2 1 10 10 C 1.35764 * 116.99745 * 185.03180 * 9 7 2 11 11 C 1.38941 * 120.01543 * 174.43283 * 10 9 7 12 12 C 1.38149 * 120.08272 * 179.97438 * 11 10 9 13 13 C 1.38264 * 120.12935 * 0.02562 * 12 11 10 14 14 Cl 1.73604 * 119.97920 * 179.97438 * 13 12 11 15 15 C 1.39056 * 120.04319 * 359.96845 * 13 12 11 16 16 N 1.39746 * 120.04203 * 180.02562 * 15 13 12 17 17 C 1.38739 * 120.02615 * 354.16417 * 10 9 7 18 18 H 0.96998 * 119.99302 * 359.97438 * 1 2 3 19 19 H 1.08001 * 119.96171 * 0.03396 * 11 10 9 20 20 H 1.07999 * 119.93336 * 180.02562 * 12 11 10 21 21 H 0.97000 * 120.00298 * 0.02562 * 16 15 13 22 22 H 0.97001 * 119.99877 * 180.02562 * 16 15 13 23 23 H 1.08004 * 120.05944 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4473 2.6525 0.7003 6 1 3.5474 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4059 -0.1077 11 6 5.3557 -2.4712 -0.2311 12 6 5.9841 -3.6967 -0.3392 13 6 5.2400 -4.8619 -0.3254 14 17 6.0337 -6.3998 -0.4621 15 6 3.8562 -4.8028 -0.2019 16 7 3.1041 -5.9805 -0.1874 17 6 3.2236 -3.5732 -0.0878 18 1 -0.4849 0.8401 0.0004 19 1 5.9397 -1.5628 -0.2417 20 1 7.0588 -3.7447 -0.4346 21 1 3.5473 -6.8400 -0.2631 22 1 2.1388 -5.9385 -0.1017 23 1 2.1494 -3.5245 0.0129 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306918599.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:52 Heat of formation + Delta-G solvation = -33.012940 kcal Electronic energy + Delta-G solvation = -11622.600142 eV Core-core repulsion = 9268.346886 eV Total energy + Delta-G solvation = -2354.253255 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.95346 -38.85546 -37.00760 -35.28233 -34.34372 -30.73235 -29.57638 -27.15184 -23.56297 -22.83905 -20.05365 -19.22649 -17.71889 -17.20113 -16.73698 -15.99010 -15.78171 -15.48035 -14.73004 -14.25724 -14.21290 -14.11202 -13.02500 -12.82440 -12.68504 -12.30095 -12.10842 -11.84997 -11.38122 -11.35975 -10.78385 -9.24698 -8.49796 -8.45515 -6.22922 0.49435 0.68240 1.34729 1.38119 1.39413 1.55162 2.29642 2.73333 2.89622 3.04479 3.15650 3.98680 4.43075 4.46367 4.78436 4.87517 5.13469 5.37069 5.40129 5.71660 5.80153 6.07191 6.45350 6.84343 6.92225 7.56310 8.61186 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.061666 B = 0.007969 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.953217 B = 3512.709824 C = 3954.269895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.400 4.400 8 H 0.084 0.916 9 O -0.235 6.235 10 C 0.170 3.830 11 C -0.231 4.231 12 C -0.015 4.015 13 C -0.185 4.185 14 Cl -0.073 7.073 15 C 0.267 3.733 16 N -0.861 5.861 17 C -0.305 4.305 18 H 0.285 0.715 19 H 0.139 0.861 20 H 0.162 0.838 21 H 0.407 0.593 22 H 0.406 0.594 23 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.014 -8.793 -0.701 13.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.101 0.899 9 O -0.141 6.141 10 C 0.119 3.881 11 C -0.252 4.252 12 C -0.034 4.034 13 C -0.216 4.216 14 Cl -0.045 7.045 15 C 0.159 3.841 16 N -0.402 5.402 17 C -0.329 4.329 18 H 0.095 0.905 19 H 0.156 0.844 20 H 0.179 0.821 21 H 0.238 0.762 22 H 0.235 0.765 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.983 -8.577 -0.689 13.180 hybrid contribution -0.639 0.082 0.022 0.644 sum 9.344 -8.495 -0.667 12.646 Atomic orbital electron populations 1.69730 1.06919 1.29659 1.49727 1.25291 0.95882 1.02206 0.95361 0.85226 0.78921 0.77351 0.79324 1.19066 1.19344 1.18428 1.20724 0.77969 0.96200 1.52682 0.89862 1.83539 1.21400 1.27201 1.81949 1.19401 0.92827 0.84532 0.91380 1.20234 0.90509 0.99084 1.15406 1.20692 1.00399 0.88625 0.93654 1.20080 0.90309 0.87448 1.23777 1.98268 1.79604 1.29205 1.97408 1.17179 0.89346 0.86935 0.90660 1.42484 1.09632 1.04985 1.83092 1.20529 1.00380 0.90947 1.21067 0.90542 0.84353 0.82070 0.76218 0.76471 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.91 13.96 21.61 0.30 -53.61 14 2 C 0.01 0.65 5.49 84.83 0.47 1.12 14 3 Si 0.97 44.39 28.62 68.60 1.96 46.35 14 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 14 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 14 6 H -0.26 -11.83 7.11 99.48 0.71 -11.12 14 7 C -0.40 -22.97 9.94 67.92 0.68 -22.30 14 8 H 0.08 5.00 5.44 -2.91 -0.02 4.98 14 9 O -0.23 -12.39 8.58 -22.92 -0.20 -12.59 14 10 C 0.17 7.75 6.64 22.56 0.15 7.90 14 11 C -0.23 -8.60 9.99 22.42 0.22 -8.38 14 12 C -0.01 -0.46 9.81 22.25 0.22 -0.24 14 13 C -0.18 -5.88 6.34 22.47 0.14 -5.73 14 14 Cl -0.07 -1.86 27.58 -2.72 -0.08 -1.93 14 15 C 0.27 9.35 6.75 38.20 0.26 9.60 14 16 N -0.86 -23.60 9.04 -51.34 -0.46 -24.06 14 17 C -0.30 -13.10 9.01 22.51 0.20 -12.89 14 18 H 0.28 15.32 8.31 -92.71 -0.77 14.55 14 19 H 0.14 4.65 8.06 -2.91 -0.02 4.63 14 20 H 0.16 3.80 8.06 -2.91 -0.02 3.78 14 21 H 0.41 9.33 7.50 -92.71 -0.70 8.64 14 22 H 0.41 10.17 8.84 -92.71 -0.82 9.35 14 23 H 0.12 5.54 5.64 -2.91 -0.02 5.53 14 Total: -1.00 -61.91 224.93 3.62 -58.29 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.24 Total: 18.48 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 2.34 Total: -30.92 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -0.16 Total: -77.67 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.20 Total: -12.59 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.96 Total: 46.35 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.93 kcal Total: -61.91 3.62 -58.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306918599.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.275 kcal (2) G-P(sol) polarization free energy of solvation -61.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds