Wall clock time and date at job start Mon Mar 30 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86803 * 120.00449 * 2 1 4 4 H 1.48498 * 109.47258 * 240.00227 * 3 2 1 5 5 H 1.48505 * 109.46765 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47064 * 120.00026 * 3 2 1 7 7 C 1.40040 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99676 * 179.97438 * 7 2 1 9 9 C 1.41407 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.40607 * 119.82620 * 179.97438 * 9 7 2 11 11 C 1.38302 * 118.96824 * 180.02562 * 10 9 7 12 12 Cl 1.73596 * 120.71862 * 179.97438 * 11 10 9 13 13 C 1.39103 * 118.56029 * 359.97438 * 11 10 9 14 14 C 1.38703 * 119.53871 * 359.97438 * 13 11 10 15 15 C 1.50706 * 119.47997 * 179.97438 * 14 13 11 16 16 O 1.42894 * 109.47263 * 0.02562 * 15 14 13 17 17 N 1.31437 * 121.03267 * 0.25971 * 14 13 11 18 18 H 0.97000 * 119.99790 * 359.97438 * 1 2 3 19 19 H 1.08010 * 120.51258 * 359.97438 * 10 9 7 20 20 H 1.07994 * 120.23078 * 179.97438 * 13 11 10 21 21 H 1.09001 * 109.46564 * 120.00464 * 15 14 13 22 22 H 1.08998 * 109.47012 * 239.99518 * 15 14 13 23 23 H 0.96696 * 113.99826 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0074 -1.2128 0.0005 8 1 3.0875 -1.2129 0.0001 9 6 1.3004 -2.4374 0.0005 10 6 2.0070 -3.6530 0.0005 11 6 1.2976 -4.8402 0.0000 12 17 2.1238 -6.3670 -0.0007 13 6 -0.0923 -4.7844 0.0000 14 6 -0.7271 -3.5512 0.0011 15 6 -2.2330 -3.4922 0.0006 16 8 -2.7617 -4.8198 -0.0005 17 7 -0.0359 -2.4332 -0.0030 18 1 -0.4850 0.8401 0.0004 19 1 3.0871 -3.6594 0.0001 20 1 -0.6730 -5.6949 -0.0008 21 1 -2.5763 -2.9655 0.8910 22 1 -2.5756 -2.9635 -0.8889 23 1 -3.7279 -4.8583 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307190243.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:23 Heat of formation + Delta-G solvation = -31.800591 kcal Electronic energy + Delta-G solvation = -11705.288444 eV Core-core repulsion = 9351.087760 eV Total energy + Delta-G solvation = -2354.200684 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.52693 -36.21261 -35.63561 -33.64174 -30.85275 -30.15690 -26.46854 -25.18675 -21.55679 -20.50592 -17.68886 -16.79920 -15.48484 -14.87678 -14.38733 -14.31347 -14.02488 -13.11930 -12.81280 -12.48450 -11.42709 -11.31186 -11.17043 -11.03448 -10.96153 -10.62105 -10.43794 -9.80338 -9.78893 -9.29513 -8.02862 -7.78431 -7.69412 -6.54570 -4.66307 2.57179 2.70178 3.02651 3.03516 3.10172 3.11117 3.86820 4.58144 4.64865 5.60120 5.73311 6.03954 6.23192 6.39586 6.57696 6.75100 6.89329 7.07253 7.33644 7.45888 7.70769 8.03087 8.16280 8.48241 8.75027 9.89875 10.18248 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.010792 C = 0.007975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.491508 B = 2593.954538 C = 3510.301990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.069 3.931 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.087 0.913 9 C 0.266 3.734 10 C -0.266 4.266 11 C 0.038 3.962 12 Cl -0.115 7.115 13 C -0.285 4.285 14 C 0.156 3.844 15 C 0.139 3.861 16 O -0.571 6.571 17 N -0.479 5.479 18 H 0.275 0.725 19 H 0.111 0.889 20 H 0.117 0.883 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -2.045 0.006 3.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.157 4.157 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.105 0.895 9 C 0.141 3.859 10 C -0.290 4.290 11 C 0.006 3.994 12 Cl -0.087 7.087 13 C -0.309 4.309 14 C 0.010 3.990 15 C 0.061 3.939 16 O -0.375 6.375 17 N -0.193 5.193 18 H 0.086 0.914 19 H 0.129 0.871 20 H 0.135 0.865 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.096 -1.364 0.000 2.501 hybrid contribution 0.348 -0.105 0.002 0.364 sum -1.748 -1.469 0.003 2.284 Atomic orbital electron populations 1.70100 1.07269 1.28135 1.28054 1.26076 0.94964 1.01194 0.93456 0.86321 0.80062 0.80070 0.80029 1.18816 1.20133 1.18819 1.19584 0.94405 0.89034 1.42546 0.89456 1.18407 0.87412 0.91346 0.88708 1.21717 0.99380 0.91521 1.16358 1.20882 0.92433 0.84419 1.01694 1.98267 1.79715 1.33511 1.97203 1.20952 0.91598 0.99059 1.19293 1.20689 0.94228 0.89206 0.94897 1.20503 0.90723 0.82349 1.00349 1.86478 1.24781 1.28348 1.97860 1.68298 1.07452 1.25671 1.17928 0.91377 0.87139 0.86511 0.92328 0.92314 0.78175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.26 11.46 55.55 0.64 -17.63 14 2 C 0.07 1.69 5.50 -17.34 -0.10 1.60 14 3 Si 0.91 17.98 29.56 -169.99 -5.02 12.95 14 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 14 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 14 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 14 7 C -0.42 -11.07 9.14 -37.70 -0.34 -11.42 14 8 H 0.09 2.11 7.85 -52.49 -0.41 1.70 14 9 C 0.27 7.21 6.55 -84.99 -0.56 6.66 14 10 C -0.27 -6.64 9.66 -38.66 -0.37 -7.02 14 11 C 0.04 0.90 6.36 -39.24 -0.25 0.65 14 12 Cl -0.12 -2.31 29.01 -51.86 -1.50 -3.81 14 13 C -0.29 -6.82 9.25 -39.09 -0.36 -7.18 14 14 C 0.16 3.81 6.78 -82.59 -0.56 3.25 14 15 C 0.14 2.71 7.58 36.01 0.27 2.98 14 16 O -0.57 -9.76 12.10 -35.23 -0.43 -10.19 14 17 N -0.48 -12.93 7.77 -7.38 -0.06 -12.99 14 18 H 0.28 6.34 8.29 -40.82 -0.34 6.01 14 19 H 0.11 2.57 8.06 -52.48 -0.42 2.15 14 20 H 0.12 2.68 6.98 -52.49 -0.37 2.31 14 21 H 0.06 1.09 8.14 -51.93 -0.42 0.67 14 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 14 23 H 0.37 4.08 9.12 45.56 0.42 4.49 14 LS Contribution 228.64 15.07 3.45 3.45 Total: -1.00 -29.12 228.64 -5.96 -35.09 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -0.77 Total: 3.61 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.27 Total: -10.48 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.58 Total: -30.61 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.43 Total: -10.19 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.02 Total: 12.95 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -1.50 Total: -3.81 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.12 -5.96 -35.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307190243.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.285 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds